Strain Fitness in Shewanella amazonensis SB2B around Sama_3156

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
3,742,456	+		Sama_3154	0.73	-0.9
3,742,456	+		Sama_3154	0.73	-1.4
3,742,457	-		Sama_3154	0.73	+0.6
3,742,457	-		Sama_3154	0.73	+1.4
3,742,457	-		Sama_3154	0.73	-1.4
3,742,457	-		Sama_3154	0.73	+1.1
3,742,496	+		Sama_3154	0.81	+0.6
3,742,575	-				-0.0
3,742,597	+				-1.4
3,742,598	-				-0.4
3,742,609	+				+0.1
3,742,610	-				-0.3
3,742,619	-				+0.6
3,742,627	-				-0.7
3,742,664	+				+0.6
3,742,664	+				+0.3
3,742,665	-				+0.5
3,742,669	-				+0.6
3,742,705	+				-0.5
3,742,705	+				+0.9
3,742,706	-				+1.9
3,742,706	-				-0.6
3,742,725	-				-0.4
3,742,738	+				-0.1
3,742,738	+				-0.9
3,742,739	-				+1.3
3,742,767	+				+2.0
3,742,803	+				+0.2
3,742,803	+				+0.2
3,742,804	-				+0.2
3,742,804	-				-0.3
3,742,805	+				+0.9
3,742,805	+				+0.4
3,742,805	+				-2.7
3,742,805	+				-2.2
3,742,805	+				+0.8
3,742,806	-				+0.3
3,742,806	-				+1.6
3,742,806	-				+0.0
3,742,874	+				+0.1
3,742,875	-				+0.7
3,742,878	+				+0.7
3,742,878	+				+1.5
3,742,879	-				-0.1
3,742,879	-				+1.6
3,742,879	-				-0.3
3,742,879	-				-0.4
3,742,879	-				+0.2
3,742,879	-				-0.7
3,742,933	-		Sama_3155	0.18	+1.5
3,742,943	-		Sama_3155	0.20	-0.5
3,742,977	-		Sama_3155	0.26	-1.6
3,742,977	-		Sama_3155	0.26	-0.6
3,743,000	+		Sama_3155	0.31	+1.2
3,743,000	+		Sama_3155	0.31	+0.8
3,743,000	+		Sama_3155	0.31	-1.0
3,743,001	-		Sama_3155	0.31	-0.5
3,743,001	-		Sama_3155	0.31	-1.1
3,743,024	+		Sama_3155	0.35	-0.1
3,743,025	-		Sama_3155	0.36	-0.1
3,743,077	+		Sama_3155	0.46	-1.0
3,743,078	-		Sama_3155	0.46	+0.1
3,743,078	-		Sama_3155	0.46	-2.4
3,743,168	+		Sama_3155	0.64	+1.0
3,743,168	+		Sama_3155	0.64	-0.8
3,743,168	+		Sama_3155	0.64	+1.1
3,743,168	+		Sama_3155	0.64	-1.3
3,743,168	+		Sama_3155	0.64	+0.6
3,743,169	-		Sama_3155	0.64	-1.1
3,743,169	-		Sama_3155	0.64	+0.8
3,743,195	+		Sama_3155	0.69	-0.0
3,743,195	+		Sama_3155	0.69	-1.3
3,743,196	-		Sama_3155	0.69	-1.1
3,743,226	+		Sama_3155	0.75	+1.3
3,743,227	-		Sama_3155	0.75	+1.1
3,743,352	+				+0.3
3,743,352	+				+1.5
3,743,352	+				-1.7
3,743,353	-				+0.2
3,743,353	-				+0.1
3,743,353	-				-0.2
3,743,353	-				-0.5
3,743,353	-				+0.7
3,743,384	-				-0.9
3,743,416	+				-1.2
3,743,416	+				+0.9
3,743,417	-				+1.0
3,743,491	+		Sama_3156	0.10	+0.2
3,743,491	+		Sama_3156	0.10	+0.4
3,743,491	+		Sama_3156	0.10	+1.2
3,743,492	-		Sama_3156	0.10	+0.2
3,743,492	-		Sama_3156	0.10	+2.5
3,743,492	-		Sama_3156	0.10	+0.2
3,743,492	-		Sama_3156	0.10	+1.1
3,743,498	+		Sama_3156	0.12	+0.1
3,743,498	+		Sama_3156	0.12	-1.1
3,743,498	+		Sama_3156	0.12	-0.5
3,743,498	+		Sama_3156	0.12	+0.2
3,743,498	+		Sama_3156	0.12	-1.5
3,743,499	-		Sama_3156	0.12	-1.2
3,743,499	-		Sama_3156	0.12	+0.1
3,743,499	-		Sama_3156	0.12	+0.3
3,743,499	-		Sama_3156	0.12	-1.1
3,743,499	-		Sama_3156	0.12	+2.2
3,743,510	+		Sama_3156	0.15	+0.5
3,743,511	-		Sama_3156	0.15	-0.5
3,743,511	-		Sama_3156	0.15	+0.2
3,743,511	-		Sama_3156	0.15	-1.4
3,743,511	-		Sama_3156	0.15	-0.4
3,743,511	-		Sama_3156	0.15	+0.9
3,743,511	-		Sama_3156	0.15	+0.0
3,743,547	+		Sama_3156	0.24	-0.0
3,743,547	+		Sama_3156	0.24	-2.0
3,743,548	-		Sama_3156	0.24	+0.5
3,743,548	-		Sama_3156	0.24	-2.4
3,743,553	+		Sama_3156	0.25	+0.2
3,743,553	+		Sama_3156	0.25	+1.6
3,743,554	-		Sama_3156	0.26	+0.3
3,743,554	-		Sama_3156	0.26	+0.2
3,743,554	-		Sama_3156	0.26	+0.6
3,743,554	-		Sama_3156	0.26	+0.7
3,743,564	+		Sama_3156	0.28	+0.7
3,743,565	-		Sama_3156	0.28	-0.0
3,743,565	-		Sama_3156	0.28	-0.0
3,743,573	+		Sama_3156	0.30	-2.0
3,743,593	-		Sama_3156	0.35	+0.7
3,743,593	-		Sama_3156	0.35	+0.4
3,743,593	-		Sama_3156	0.35	+0.3
3,743,626	+		Sama_3156	0.43	+0.6
3,743,626	+		Sama_3156	0.43	+0.6
3,743,626	+		Sama_3156	0.43	+1.5
3,743,626	+		Sama_3156	0.43	-1.2
3,743,626	+		Sama_3156	0.43	+0.6
3,743,626	+		Sama_3156	0.43	-1.9
3,743,626	+		Sama_3156	0.43	-0.6
3,743,626	+		Sama_3156	0.43	+1.0
3,743,626	+		Sama_3156	0.43	+0.0
3,743,626	+		Sama_3156	0.43	+0.7
3,743,626	+		Sama_3156	0.43	-2.0
3,743,626	+		Sama_3156	0.43	+0.8
3,743,627	-		Sama_3156	0.43	+0.9
3,743,628	+		Sama_3156	0.44	+0.8
3,743,628	+		Sama_3156	0.44	-0.7
3,743,628	+		Sama_3156	0.44	-2.3
3,743,628	+		Sama_3156	0.44	-2.0
3,743,673	+		Sama_3156	0.55	+0.6
3,743,673	+		Sama_3156	0.55	+1.7
3,743,673	+		Sama_3156	0.55	-0.0
3,743,815	+		Sama_3156	0.89	-0.0
3,743,815	+		Sama_3156	0.89	+1.0
3,743,815	+		Sama_3156	0.89	+1.8
3,743,815	+		Sama_3156	0.89	-2.1
3,743,815	+		Sama_3156	0.89	-0.1
3,743,815	+		Sama_3156	0.89	-2.5
3,743,815	+		Sama_3156	0.89	-1.6
3,743,815	+		Sama_3156	0.89	-0.7
3,743,815	+		Sama_3156	0.89	-0.9
3,743,815	+		Sama_3156	0.89	+0.6
3,743,816	-		Sama_3156	0.89	+0.5
3,743,816	-		Sama_3156	0.89	+1.5
3,743,816	-		Sama_3156	0.89	+0.2
3,743,816	-		Sama_3156	0.89	-0.1
3,743,816	-		Sama_3156	0.89	-0.8
3,743,816	-		Sama_3156	0.89	+1.0
3,743,864	-				-1.6
3,743,890	-				-1.5
3,743,890	-				+0.7
3,743,902	+				+1.3
3,743,902	+				+0.7
3,743,903	-				-2.1
3,743,963	+				+1.0
3,743,963	+				+1.0
3,744,005	+				-0.5
3,744,033	+				+1.0
3,744,033	+				+0.6
3,744,033	+				+1.5
3,744,034	-				-2.0
3,744,113	+		Sama_3157	0.18	+1.1
3,744,113	+		Sama_3157	0.18	-0.4
3,744,113	+		Sama_3157	0.18	+1.2
3,744,114	-		Sama_3157	0.18	+1.5
3,744,114	-		Sama_3157	0.18	-0.3
3,744,157	+		Sama_3157	0.23	-0.1
3,744,157	+		Sama_3157	0.23	+1.5
3,744,157	+		Sama_3157	0.23	+0.0
3,744,157	+		Sama_3157	0.23	+1.5
3,744,157	+		Sama_3157	0.23	+0.8
3,744,157	+		Sama_3157	0.23	+2.1
3,744,158	-		Sama_3157	0.23	+0.4
3,744,158	-		Sama_3157	0.23	+0.6
3,744,158	-		Sama_3157	0.23	+0.0
3,744,158	-		Sama_3157	0.23	+0.7
3,744,158	-		Sama_3157	0.23	+0.5
3,744,159	+		Sama_3157	0.23	+1.2
3,744,159	+		Sama_3157	0.23	-0.8
3,744,159	+		Sama_3157	0.23	-0.1
3,744,160	-		Sama_3157	0.24	+0.4
3,744,160	-		Sama_3157	0.24	-0.4
3,744,190	+		Sama_3157	0.27	+0.9
3,744,190	+		Sama_3157	0.27	-1.5
3,744,190	+		Sama_3157	0.27	+1.0
3,744,191	-		Sama_3157	0.27	+1.2
3,744,191	-		Sama_3157	0.27	-0.2
3,744,191	-		Sama_3157	0.27	-1.1
3,744,191	-		Sama_3157	0.27	-0.8
3,744,191	-		Sama_3157	0.27	+0.3
3,744,191	-		Sama_3157	0.27	-1.2
3,744,191	-		Sama_3157	0.27	+0.2
3,744,191	-		Sama_3157	0.27	+0.5
3,744,228	+		Sama_3157	0.32	+1.0
3,744,228	+		Sama_3157	0.32	+0.1
3,744,228	+		Sama_3157	0.32	-1.1
3,744,228	+		Sama_3157	0.32	+1.4
3,744,228	+		Sama_3157	0.32	-1.4
3,744,229	-		Sama_3157	0.32	-2.4
3,744,229	-		Sama_3157	0.32	-2.1
3,744,229	-		Sama_3157	0.32	-0.6
3,744,229	-		Sama_3157	0.32	-2.9
3,744,303	+		Sama_3157	0.41	-1.3
3,744,304	-		Sama_3157	0.42	+0.9
3,744,304	-		Sama_3157	0.42	+1.5
3,744,304	-		Sama_3157	0.42	+1.6
3,744,345	+		Sama_3157	0.47	+0.2
3,744,442	-		Sama_3157	0.59	+1.5
3,744,465	+		Sama_3157	0.62	+0.7
3,744,465	+		Sama_3157	0.62	-0.5
3,744,465	+		Sama_3157	0.62	-1.7
3,744,466	-		Sama_3157	0.62	+0.1
3,744,466	-		Sama_3157	0.62	+0.1
3,744,522	+		Sama_3157	0.69	+0.4
3,744,522	+		Sama_3157	0.69	-1.3
3,744,523	-		Sama_3157	0.69	-0.1
3,744,523	-		Sama_3157	0.69	+0.3
3,744,559	+		Sama_3157	0.73	-2.4
3,744,627	+		Sama_3157	0.82	-0.5
3,744,627	+		Sama_3157	0.82	+0.3
3,744,628	-		Sama_3157	0.82	-2.2
3,744,671	+		Sama_3157	0.87	-1.6
3,744,672	-		Sama_3157	0.88	+0.4
3,744,712	-				+1.5
3,744,748	+				-0.5
3,744,749	-				-1.3
3,744,769	+				+0.0
3,744,769	+				-0.7
3,744,839	+				-0.1
3,744,856	+				-0.9
3,744,857	-				-0.3
3,744,857	-				+0.9