Strain Fitness in Shewanella amazonensis SB2B around Sama_3136

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
3,723,399	+		Sama_3135	0.12	+0.4
3,723,399	+		Sama_3135	0.12	-0.1
3,723,399	+		Sama_3135	0.12	+1.4
3,723,399	+		Sama_3135	0.12	+0.9
3,723,400	-		Sama_3135	0.13	-0.4
3,723,430	+		Sama_3135	0.16	+0.4
3,723,430	+		Sama_3135	0.16	+0.9
3,723,431	-		Sama_3135	0.16	-1.1
3,723,431	-		Sama_3135	0.16	-0.3
3,723,445	+		Sama_3135	0.18	+1.4
3,723,445	+		Sama_3135	0.18	+0.2
3,723,445	+		Sama_3135	0.18	-2.9
3,723,497	+		Sama_3135	0.25	+2.1
3,723,497	+		Sama_3135	0.25	-2.1
3,723,498	-		Sama_3135	0.25	-0.4
3,723,498	-		Sama_3135	0.25	-0.4
3,723,498	-		Sama_3135	0.25	+0.5
3,723,529	+		Sama_3135	0.29	+1.0
3,723,529	+		Sama_3135	0.29	-0.3
3,723,530	-		Sama_3135	0.29	+3.2
3,723,632	+		Sama_3135	0.41	+0.3
3,723,633	-		Sama_3135	0.41	-1.0
3,723,691	+		Sama_3135	0.49	+0.6
3,723,692	-		Sama_3135	0.49	+0.2
3,723,768	+		Sama_3135	0.58	-1.4
3,723,768	+		Sama_3135	0.58	+0.4
3,723,769	-		Sama_3135	0.58	-1.8
3,723,787	+		Sama_3135	0.60	+1.3
3,723,788	-		Sama_3135	0.61	-1.1
3,723,788	-		Sama_3135	0.61	-0.1
3,723,907	+		Sama_3135	0.75	+0.7
3,723,907	+		Sama_3135	0.75	+0.8
3,723,908	-		Sama_3135	0.75	+0.3
3,723,947	+		Sama_3135	0.80	+0.6
3,723,947	+		Sama_3135	0.80	-1.6
3,723,948	-		Sama_3135	0.80	+0.9
3,723,948	-		Sama_3135	0.80	-0.5
3,724,049	+				+1.0
3,724,049	+				+0.5
3,724,049	+				+1.9
3,724,050	-				+0.8
3,724,064	+				-0.1
3,724,077	-				+0.6
3,724,077	-				-1.1
3,724,115	+				-0.1
3,724,116	-				-0.0
3,724,116	-				+0.7
3,724,116	-				-1.1
3,724,146	-				+0.3
3,724,146	-				-2.7
3,724,146	-				-0.2
3,724,146	-				+0.4
3,724,221	+				+0.2
3,724,253	-				-0.0
3,724,253	-				-1.9
3,724,352	+				+0.2
3,724,352	+				+0.4
3,724,353	-				-0.6
3,724,353	-				-1.4
3,724,361	+				+1.5
3,724,361	+				-0.0
3,724,361	+				-1.8
3,724,362	-				-1.4
3,724,383	+				-1.1
3,724,383	+				+0.9
3,724,383	+				-0.9
3,724,384	-				+0.7
3,724,405	+				+0.1
3,724,406	-				-0.1
3,724,411	+				-0.4
3,724,411	+				+0.0
3,724,411	+				+0.8
3,724,411	+				-2.1
3,724,411	+				+0.1
3,724,411	+				+0.7
3,724,411	+				-0.9
3,724,411	+				+0.7
3,724,411	+				+0.0
3,724,411	+				+0.0
3,724,412	-				-1.7
3,724,412	-				-1.8
3,724,412	-				-0.5
3,724,412	-				-1.3
3,724,412	-				+0.5
3,724,412	-				+0.0
3,724,481	+				+1.3
3,724,481	+				+0.0
3,724,481	+				-1.3
3,724,481	+				-0.9
3,724,481	+				-0.1
3,724,481	+				+0.2
3,724,482	-				+0.0
3,724,482	-				+1.0
3,724,482	-				+0.3
3,724,559	+		Sama_3136	0.17	-1.7
3,724,559	+		Sama_3136	0.17	+0.4
3,724,559	+		Sama_3136	0.17	-0.9
3,724,559	+		Sama_3136	0.17	+0.7
3,724,559	+		Sama_3136	0.17	+0.9
3,724,560	-		Sama_3136	0.17	-1.2
3,724,578	+		Sama_3136	0.18	-0.2
3,724,579	-		Sama_3136	0.19	-2.1
3,724,585	+		Sama_3136	0.19	-0.4
3,724,585	+		Sama_3136	0.19	+0.8
3,724,613	-		Sama_3136	0.22	+1.4
3,724,628	-		Sama_3136	0.23	-0.8
3,724,628	-		Sama_3136	0.23	-0.1
3,724,628	-		Sama_3136	0.23	-0.4
3,724,628	-		Sama_3136	0.23	+1.0
3,724,652	+		Sama_3136	0.26	-0.3
3,724,724	-		Sama_3136	0.33	-0.2
3,724,748	+		Sama_3136	0.35	-1.9
3,724,801	+		Sama_3136	0.41	-1.6
3,724,868	-		Sama_3136	0.47	-0.1
3,724,939	+		Sama_3136	0.54	-2.1
3,724,939	+		Sama_3136	0.54	-0.5
3,724,939	+		Sama_3136	0.54	-2.9
3,724,940	-		Sama_3136	0.54	+0.8
3,724,940	-		Sama_3136	0.54	-1.7
3,724,940	-		Sama_3136	0.54	-1.6
3,725,001	-		Sama_3136	0.60	-0.7
3,725,122	+		Sama_3136	0.72	+0.4
3,725,122	+		Sama_3136	0.72	-0.3
3,725,122	+		Sama_3136	0.72	-2.5
3,725,123	-		Sama_3136	0.73	-0.1
3,725,123	-		Sama_3136	0.73	+0.3
3,725,123	-		Sama_3136	0.73	+1.0
3,725,239	+		Sama_3136	0.84	-0.3
3,725,239	+		Sama_3136	0.84	+0.1
3,725,240	-		Sama_3136	0.84	+0.4
3,725,240	-		Sama_3136	0.84	+0.6
3,725,292	+		Sama_3136	0.89	-0.4
3,725,292	+		Sama_3136	0.89	+0.9
3,725,292	+		Sama_3136	0.89	-0.1
3,725,292	+		Sama_3136	0.89	-1.5
3,725,293	-		Sama_3136	0.89	-1.6
3,725,293	-		Sama_3136	0.89	-1.1
3,725,293	-		Sama_3136	0.89	+1.0
3,725,293	-		Sama_3136	0.89	-1.4
3,725,367	+				-0.1
3,725,368	-				-0.4
3,725,368	-				-1.0
3,725,379	+				-1.6
3,725,379	+				-1.3
3,725,379	+				+1.0
3,725,379	+				+0.8
3,725,379	+				+0.2
3,725,380	-				-1.9
3,725,380	-				-0.6
3,725,380	-				+0.0
3,725,380	-				+0.9
3,725,380	-				-0.1
3,725,381	+				+0.2
3,725,381	+				-1.1
3,725,381	+				+0.6
3,725,381	+				+0.1
3,725,381	+				-0.6
3,725,381	+				+0.8
3,725,381	+				-0.8
3,725,381	+				-0.7
3,725,381	+				+0.2
3,725,382	-				-1.7
3,725,382	-				+6.5
3,725,382	-				-0.9
3,725,382	-				+0.9
3,725,382	-				-0.6
3,725,382	-				-1.1
3,725,382	-				-0.5
3,725,382	-				-2.1
3,725,382	-				-0.2
3,725,382	-				-1.1
3,725,382	-				+0.4
3,725,382	-				+0.0
3,725,454	+				+0.4
3,725,455	-				+0.1
3,725,455	-				-0.4
3,725,455	-				-1.1
3,725,460	+				+0.7
3,725,460	+				+0.2
3,725,461	-				+0.4
3,725,474	+				-2.0
3,725,475	-				-1.6
3,725,475	-				-1.4
3,725,475	-				-1.2
3,725,475	-				+1.9
3,725,511	+		Sama_3137	0.10	-0.4
3,725,512	-		Sama_3137	0.10	+0.2
3,725,532	+		Sama_3137	0.12	-0.5
3,725,533	-		Sama_3137	0.12	-1.1
3,725,641	+		Sama_3137	0.24	-0.6
3,725,642	-		Sama_3137	0.24	+0.4
3,725,665	-		Sama_3137	0.26	+0.3
3,725,690	+		Sama_3137	0.29	+0.2
3,725,691	-		Sama_3137	0.29	+0.1
3,725,691	-		Sama_3137	0.29	+0.2
3,725,691	-		Sama_3137	0.29	-0.3
3,725,708	-		Sama_3137	0.31	-0.5
3,725,736	+		Sama_3137	0.34	+0.2
3,725,736	+		Sama_3137	0.34	+0.4
3,725,736	+		Sama_3137	0.34	+0.3
3,725,737	-		Sama_3137	0.34	-0.6
3,725,737	-		Sama_3137	0.34	+0.1
3,725,737	-		Sama_3137	0.34	-1.0
3,725,737	-		Sama_3137	0.34	-0.4
3,725,737	-		Sama_3137	0.34	-0.8
3,725,737	-		Sama_3137	0.34	-0.4
3,725,737	-		Sama_3137	0.34	-0.0
3,725,737	-		Sama_3137	0.34	+0.4
3,725,740	+		Sama_3137	0.34	-1.5
3,725,740	+		Sama_3137	0.34	-2.7
3,725,740	+		Sama_3137	0.34	+0.6
3,725,741	-		Sama_3137	0.34	-0.1
3,725,788	-		Sama_3137	0.39	-1.2
3,725,788	-		Sama_3137	0.39	-0.9
3,725,793	+		Sama_3137	0.40	+0.3
3,725,809	+		Sama_3137	0.41	-2.3
3,725,809	+		Sama_3137	0.41	+1.1
3,725,809	+		Sama_3137	0.41	+0.5
3,725,810	-		Sama_3137	0.41	+2.1
3,725,810	-		Sama_3137	0.41	-0.9
3,725,810	-		Sama_3137	0.41	+0.6
3,725,810	-		Sama_3137	0.41	+0.2
3,725,810	-		Sama_3137	0.41	+0.7
3,725,835	+		Sama_3137	0.44	+3.0
3,725,835	+		Sama_3137	0.44	-0.6
3,725,895	+		Sama_3137	0.50	+1.2
3,725,895	+		Sama_3137	0.50	-3.6
3,725,896	-		Sama_3137	0.50	-1.5
3,725,944	+		Sama_3137	0.55	+0.8
3,725,944	+		Sama_3137	0.55	-0.4
3,725,945	-		Sama_3137	0.55	+0.7
3,725,955	+		Sama_3137	0.56	-1.4
3,725,955	+		Sama_3137	0.56	-1.1
3,725,994	+		Sama_3137	0.61	+1.1
3,725,994	+		Sama_3137	0.61	-1.1
3,725,994	+		Sama_3137	0.61	+1.6
3,726,035	+		Sama_3137	0.65	-0.4
3,726,035	+		Sama_3137	0.65	-0.6
3,726,036	-		Sama_3137	0.65	-1.9
3,726,062	+		Sama_3137	0.68	+0.3
3,726,062	+		Sama_3137	0.68	-1.1
3,726,062	+		Sama_3137	0.68	-1.2
3,726,062	+		Sama_3137	0.68	+1.3
3,726,063	-		Sama_3137	0.68	+0.4
3,726,063	-		Sama_3137	0.68	-1.0
3,726,063	-		Sama_3137	0.68	+1.2
3,726,063	-		Sama_3137	0.68	+0.1
3,726,175	-		Sama_3137	0.79	-0.1
3,726,322	+				-0.1
3,726,361	+				+1.3
3,726,362	-				+1.6
3,726,370	+				-1.2
3,726,370	+				-0.6
3,726,370	+				-0.7
3,726,370	+				-1.0
3,726,370	+				+0.9
3,726,371	-				-0.7
3,726,380	+				+0.8
3,726,380	+				-1.5