Strain Fitness in Shewanella amazonensis SB2B around Sama_3091

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
3,664,808	+		Sama_3088	0.88	-2.8
3,664,808	+		Sama_3088	0.88	-2.4
3,664,808	+		Sama_3088	0.88	-2.3
3,664,808	+		Sama_3088	0.88	-1.8
3,664,809	-		Sama_3088	0.88	-2.8
3,664,809	-		Sama_3088	0.88	-0.4
3,664,827	-		Sama_3088	0.89	-2.9
3,664,827	-		Sama_3088	0.89	-2.0
3,664,919	+				-1.4
3,664,920	-				-1.8
3,664,938	+				-2.4
3,664,938	+				-1.8
3,664,939	-				-2.2
3,664,939	-				-1.4
3,664,976	+				-2.0
3,664,976	+				-1.2
3,664,976	+				+1.3
3,664,976	+				+1.4
3,664,977	-				-1.9
3,664,977	-				+0.1
3,664,977	-				-2.3
3,664,977	-				-1.2
3,664,984	+				-0.6
3,664,985	-				-1.3
3,664,985	-				+0.7
3,664,986	+				+0.6
3,664,987	-				+2.0
3,664,987	-				-0.4
3,665,019	-				-0.2
3,665,045	+				-0.4
3,665,069	+		Sama_3089	0.17	-0.1
3,665,070	-		Sama_3089	0.18	+2.0
3,665,070	-		Sama_3089	0.18	+0.6
3,665,070	-		Sama_3089	0.18	-1.9
3,665,073	+		Sama_3089	0.19	-2.4
3,665,073	+		Sama_3089	0.19	+0.4
3,665,073	+		Sama_3089	0.19	+0.7
3,665,073	+		Sama_3089	0.19	-3.7
3,665,073	+		Sama_3089	0.19	+0.0
3,665,073	+		Sama_3089	0.19	+0.0
3,665,073	+		Sama_3089	0.19	+0.0
3,665,073	+		Sama_3089	0.19	+0.5
3,665,074	-		Sama_3089	0.19	+0.0
3,665,074	-		Sama_3089	0.19	+0.3
3,665,074	-		Sama_3089	0.19	-1.4
3,665,074	-		Sama_3089	0.19	-0.6
3,665,074	-		Sama_3089	0.19	+0.4
3,665,077	+		Sama_3089	0.20	-0.4
3,665,077	+		Sama_3089	0.20	+0.3
3,665,077	+		Sama_3089	0.20	+1.6
3,665,077	+		Sama_3089	0.20	-1.6
3,665,077	+		Sama_3089	0.20	-0.7
3,665,078	-		Sama_3089	0.20	-1.2
3,665,078	-		Sama_3089	0.20	-2.2
3,665,123	+		Sama_3089	0.36	-2.0
3,665,123	+		Sama_3089	0.36	+1.2
3,665,123	+		Sama_3089	0.36	-0.9
3,665,124	-		Sama_3089	0.36	+1.4
3,665,200	+		Sama_3089	0.63	-1.9
3,665,201	-		Sama_3089	0.63	-0.2
3,665,229	+		Sama_3089	0.73	-2.3
3,665,229	+		Sama_3089	0.73	-1.2
3,665,229	+		Sama_3089	0.73	-0.6
3,665,229	+		Sama_3089	0.73	-0.2
3,665,229	+		Sama_3089	0.73	-1.6
3,665,229	+		Sama_3089	0.73	+0.9
3,665,229	+		Sama_3089	0.73	-1.2
3,665,229	+		Sama_3089	0.73	+0.1
3,665,229	+		Sama_3089	0.73	-2.3
3,665,230	-		Sama_3089	0.73	-1.4
3,665,230	-		Sama_3089	0.73	-1.4
3,665,230	-		Sama_3089	0.73	-0.9
3,665,256	-		Sama_3089	0.82	-1.4
3,665,273	+		Sama_3089	0.88	-0.6
3,665,316	+				-0.2
3,665,316	+				-0.3
3,665,317	-				-0.9
3,665,317	-				-1.8
3,665,320	+				-2.3
3,665,320	+				-1.6
3,665,320	+				-0.9
3,665,344	+				+0.4
3,665,345	-				-1.2
3,665,390	-		Sama_3090	0.18	-0.6
3,665,479	+		Sama_3090	0.38	-0.6
3,665,480	-		Sama_3090	0.39	-2.3
3,665,485	+		Sama_3090	0.40	-0.0
3,665,485	+		Sama_3090	0.40	-1.2
3,665,485	+		Sama_3090	0.40	-1.2
3,665,491	+		Sama_3090	0.41	-2.9
3,665,523	+		Sama_3090	0.48	-1.8
3,665,523	+		Sama_3090	0.48	-0.2
3,665,523	+		Sama_3090	0.48	-1.2
3,665,523	+		Sama_3090	0.48	-2.2
3,665,523	+		Sama_3090	0.48	-3.0
3,665,523	+		Sama_3090	0.48	-1.9
3,665,523	+		Sama_3090	0.48	-2.0
3,665,523	+		Sama_3090	0.48	-1.6
3,665,523	+		Sama_3090	0.48	+1.0
3,665,524	-		Sama_3090	0.48	-1.6
3,665,524	-		Sama_3090	0.48	-1.2
3,665,524	-		Sama_3090	0.48	-0.9
3,665,524	-		Sama_3090	0.48	-2.5
3,665,524	-		Sama_3090	0.48	-0.2
3,665,524	-		Sama_3090	0.48	-2.2
3,665,527	+		Sama_3090	0.49	-0.9
3,665,527	+		Sama_3090	0.49	-0.0
3,665,527	+		Sama_3090	0.49	-0.9
3,665,528	-		Sama_3090	0.49	-2.0
3,665,535	+		Sama_3090	0.51	-0.9
3,665,536	-		Sama_3090	0.51	+0.1
3,665,571	-		Sama_3090	0.59	-0.2
3,665,733	-				-0.2
3,665,739	+				-0.9
3,665,739	+				-2.5
3,665,760	+				-2.0
3,665,763	-				-1.2
3,665,807	+				-2.9
3,665,824	+				-2.7
3,665,827	+				-0.3
3,665,827	+				-0.8
3,665,827	+				-2.7
3,665,828	-				-0.9
3,665,828	-				-4.0
3,665,828	-				-3.3
3,665,880	+		Sama_3091	0.15	-2.8
3,665,881	-		Sama_3091	0.15	-3.1
3,665,886	+		Sama_3091	0.16	-1.2
3,665,887	-		Sama_3091	0.16	-1.8
3,665,890	-		Sama_3091	0.17	-3.0
3,666,035	-		Sama_3091	0.34	-2.3
3,666,093	+		Sama_3091	0.40	-1.9
3,666,093	+		Sama_3091	0.40	-1.4
3,666,094	-		Sama_3091	0.40	-0.9
3,666,094	-		Sama_3091	0.40	-1.9
3,666,132	+		Sama_3091	0.45	-2.7
3,666,133	-		Sama_3091	0.45	-2.3
3,666,133	-		Sama_3091	0.45	-1.2
3,666,133	-		Sama_3091	0.45	-1.2
3,666,154	-		Sama_3091	0.48	-0.9
3,666,154	-		Sama_3091	0.48	-0.8
3,666,172	+		Sama_3091	0.50	-3.0
3,666,172	+		Sama_3091	0.50	-2.5
3,666,172	+		Sama_3091	0.50	-2.4
3,666,172	+		Sama_3091	0.50	-2.5
3,666,173	-		Sama_3091	0.50	-2.6
3,666,200	+		Sama_3091	0.53	-1.6
3,666,200	+		Sama_3091	0.53	-3.4
3,666,200	+		Sama_3091	0.53	-1.4
3,666,200	+		Sama_3091	0.53	-2.8
3,666,200	+		Sama_3091	0.53	-1.6
3,666,200	+		Sama_3091	0.53	-2.2
3,666,201	-		Sama_3091	0.53	-2.0
3,666,201	-		Sama_3091	0.53	-1.9
3,666,203	+		Sama_3091	0.53	-1.4
3,666,203	+		Sama_3091	0.53	-3.6
3,666,203	+		Sama_3091	0.53	-1.8
3,666,203	+		Sama_3091	0.53	-2.2
3,666,203	+		Sama_3091	0.53	-3.5
3,666,204	-		Sama_3091	0.53	-1.4
3,666,204	-		Sama_3091	0.53	-0.6
3,666,204	-		Sama_3091	0.53	-2.9
3,666,204	-		Sama_3091	0.53	-0.9
3,666,204	-		Sama_3091	0.53	-3.3
3,666,204	-		Sama_3091	0.53	-0.7
3,666,204	-		Sama_3091	0.53	-1.2
3,666,204	-		Sama_3091	0.53	-1.9
3,666,204	-		Sama_3091	0.53	-2.6
3,666,363	+		Sama_3091	0.72	-1.8
3,666,400	+		Sama_3091	0.76	-0.9
3,666,400	+		Sama_3091	0.76	-0.6
3,666,400	+		Sama_3091	0.76	-0.0
3,666,400	+		Sama_3091	0.76	-1.6
3,666,400	+		Sama_3091	0.76	-1.4
3,666,400	+		Sama_3091	0.76	-1.8
3,666,400	+		Sama_3091	0.76	-0.3
3,666,401	-		Sama_3091	0.77	-1.2
3,666,401	-		Sama_3091	0.77	-0.5
3,666,401	-		Sama_3091	0.77	+0.4
3,666,401	-		Sama_3091	0.77	-0.6
3,666,401	-		Sama_3091	0.77	-1.0
3,666,453	+		Sama_3091	0.83	-2.3
3,666,453	+		Sama_3091	0.83	-0.6
3,666,453	+		Sama_3091	0.83	-2.0
3,666,454	-		Sama_3091	0.83	-0.6
3,666,454	-		Sama_3091	0.83	-0.2
3,666,466	+		Sama_3091	0.84	-1.2
3,666,466	+		Sama_3091	0.84	-2.3
3,666,466	+		Sama_3091	0.84	-1.8
3,666,466	+		Sama_3091	0.84	-0.9
3,666,467	-		Sama_3091	0.84	-3.2
3,666,467	-		Sama_3091	0.84	-2.6
3,666,467	-		Sama_3091	0.84	-1.6
3,666,514	+		Sama_3091	0.90	-1.2
3,666,514	+		Sama_3091	0.90	-1.4
3,666,515	-				+0.4
3,666,515	-				-1.8
3,666,515	-				-0.6
3,666,515	-				-2.1
3,666,615	+		Sama_3092	0.10	+0.2
3,666,615	+		Sama_3092	0.10	+0.2
3,666,616	-		Sama_3092	0.11	+0.5
3,666,622	+		Sama_3092	0.13	-1.0
3,666,623	-		Sama_3092	0.13	-0.6
3,666,778	+		Sama_3092	0.69	-2.3
3,666,778	+		Sama_3092	0.69	+0.6
3,666,778	+		Sama_3092	0.69	-1.7
3,666,778	+		Sama_3092	0.69	-0.5
3,666,778	+		Sama_3092	0.69	-3.5
3,666,779	-		Sama_3092	0.70	+1.3
3,666,779	-		Sama_3092	0.70	-2.7
3,666,781	+		Sama_3092	0.70	+0.6
3,666,826	+		Sama_3092	0.87	+0.3
3,666,827	-		Sama_3092	0.87	+0.1
3,666,827	-		Sama_3092	0.87	-0.2
3,666,827	-		Sama_3092	0.87	-1.9
3,666,827	-		Sama_3092	0.87	+1.1
3,666,827	-		Sama_3092	0.87	+0.3
3,666,832	+		Sama_3092	0.89	+0.1
3,666,832	+		Sama_3092	0.89	-1.7
3,666,833	-		Sama_3092	0.89	+0.2
3,666,833	-		Sama_3092	0.89	+0.8
3,666,833	-		Sama_3092	0.89	-1.1
3,666,897	+				-1.9
3,666,900	+				+0.3
3,666,900	+				-1.2
3,666,900	+				-0.5
3,666,900	+				+1.4
3,666,900	+				+2.6
3,666,900	+				+1.2
3,666,900	+				-0.5
3,666,900	+				+0.0
3,666,901	-				-0.5
3,666,901	-				+0.4
3,666,901	-				+0.4
3,666,901	-				+0.6
3,666,901	-				-0.5
3,666,901	-				-0.4
3,666,902	+				+1.2
3,666,902	+				-2.1
3,666,902	+				+0.9
3,666,903	-				+0.3
3,666,903	-				+0.2
3,666,903	-				-0.2
3,667,008	-				-1.2
3,667,008	-				-3.0
3,667,008	-				+1.2
3,667,099	+		Sama_3093	0.12	+2.0
3,667,099	+		Sama_3093	0.12	-0.9
3,667,099	+		Sama_3093	0.12	+0.6
3,667,099	+		Sama_3093	0.12	-0.8
3,667,099	+		Sama_3093	0.12	-0.1
3,667,100	-		Sama_3093	0.12	-0.0
3,667,100	-		Sama_3093	0.12	-0.8
3,667,100	-		Sama_3093	0.12	-0.2
3,667,100	-		Sama_3093	0.12	-1.9
3,667,112	+		Sama_3093	0.13	+0.5
3,667,112	+		Sama_3093	0.13	+0.8
3,667,112	+		Sama_3093	0.13	-0.4
3,667,112	+		Sama_3093	0.13	-0.1
3,667,113	-		Sama_3093	0.13	+0.6
3,667,242	+		Sama_3093	0.23	-2.3
3,667,242	+		Sama_3093	0.23	-1.2
3,667,242	+		Sama_3093	0.23	-0.9
3,667,243	-		Sama_3093	0.23	+0.7
3,667,243	-		Sama_3093	0.23	+0.4
3,667,243	-		Sama_3093	0.23	-1.6
3,667,243	-		Sama_3093	0.23	-2.2
3,667,243	-		Sama_3093	0.23	+0.2
3,667,246	+		Sama_3093	0.23	-1.2
3,667,246	+		Sama_3093	0.23	-0.4
3,667,246	+		Sama_3093	0.23	-2.4
3,667,246	+		Sama_3093	0.23	-0.3
3,667,246	+		Sama_3093	0.23	+1.1
3,667,247	-		Sama_3093	0.23	-0.6
3,667,247	-		Sama_3093	0.23	-1.2
3,667,247	-		Sama_3093	0.23	+0.4
3,667,247	-		Sama_3093	0.23	-0.6
3,667,247	-		Sama_3093	0.23	-1.4
3,667,272	+		Sama_3093	0.25	-0.2
3,667,273	-		Sama_3093	0.25	-1.4
3,667,368	-		Sama_3093	0.32	-1.8
3,667,368	-		Sama_3093	0.32	-0.1
3,667,384	+		Sama_3093	0.33	+0.2
3,667,384	+		Sama_3093	0.33	-0.7
3,667,384	+		Sama_3093	0.33	+0.0
3,667,385	-		Sama_3093	0.33	-1.5
3,667,385	-		Sama_3093	0.33	+0.7
3,667,412	-		Sama_3093	0.35	-1.4
3,667,412	-		Sama_3093	0.35	-0.2
3,667,419	+		Sama_3093	0.36	+0.8
3,667,457	+		Sama_3093	0.38	+2.8
3,667,458	-		Sama_3093	0.38	-0.1
3,667,458	-		Sama_3093	0.38	-0.5
3,667,464	+		Sama_3093	0.39	+0.3
3,667,464	+		Sama_3093	0.39	-0.1
3,667,464	+		Sama_3093	0.39	-0.1
3,667,464	+		Sama_3093	0.39	+0.4
3,667,464	+		Sama_3093	0.39	+0.7
3,667,465	-		Sama_3093	0.39	+0.8
3,667,465	-		Sama_3093	0.39	-1.6
3,667,465	-		Sama_3093	0.39	-0.6
3,667,465	-		Sama_3093	0.39	+0.4
3,667,465	-		Sama_3093	0.39	+0.5
3,667,465	-		Sama_3093	0.39	-0.0
3,667,465	-		Sama_3093	0.39	+0.4
3,667,465	-		Sama_3093	0.39	+1.0
3,667,465	-		Sama_3093	0.39	-1.2
3,667,465	-		Sama_3093	0.39	-0.2
3,667,471	+		Sama_3093	0.39	-0.4
3,667,472	-		Sama_3093	0.39	+0.6
3,667,553	+		Sama_3093	0.45	-1.5