Strain Fitness in Shewanella amazonensis SB2B around Sama_2874

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
3,410,852	+				-2.4
3,410,852	+				+0.4
3,410,852	+				+1.0
3,410,852	+				-0.9
3,410,852	+				-4.0
3,410,853	-				-2.3
3,410,853	-				-0.1
3,410,853	-				-1.3
3,410,853	-				+0.6
3,410,853	-				+1.6
3,410,871	+				+0.3
3,410,872	-				-0.7
3,410,899	+				+2.1
3,410,899	+				+0.6
3,410,899	+				-0.6
3,410,900	-				-0.3
3,410,901	+				+0.3
3,410,902	-				-0.7
3,410,918	+				+0.0
3,411,071	+				+0.8
3,411,152	+				-0.6
3,411,152	+				-1.7
3,411,179	+		Sama_2872	0.10	+0.7
3,411,180	-		Sama_2872	0.10	-0.7
3,411,189	+		Sama_2872	0.13	+0.7
3,411,189	+		Sama_2872	0.13	-0.4
3,411,195	+		Sama_2872	0.14	-0.4
3,411,279	+		Sama_2872	0.35	+0.2
3,411,279	+		Sama_2872	0.35	+0.4
3,411,279	+		Sama_2872	0.35	-1.7
3,411,280	-		Sama_2872	0.35	-0.3
3,411,350	+		Sama_2872	0.53	+0.3
3,411,403	+		Sama_2872	0.66	-1.0
3,411,403	+		Sama_2872	0.66	-0.4
3,411,403	+		Sama_2872	0.66	-1.0
3,411,403	+		Sama_2872	0.66	+2.3
3,411,415	+		Sama_2872	0.69	-0.2
3,411,415	+		Sama_2872	0.69	-0.3
3,411,416	-		Sama_2872	0.69	-0.2
3,411,453	+		Sama_2872	0.79	+0.2
3,411,454	-		Sama_2872	0.79	+0.1
3,411,466	+		Sama_2872	0.82	-1.3
3,411,467	-		Sama_2872	0.82	+0.5
3,411,467	-		Sama_2872	0.82	-1.0
3,411,467	-		Sama_2872	0.82	+0.1
3,411,548	+				+0.6
3,411,575	+				+0.1
3,411,576	-				+0.4
3,411,623	-				-0.1
3,411,623	-				-1.0
3,411,685	-		Sama_2873	0.30	-0.8
3,411,685	-		Sama_2873	0.30	-1.1
3,411,730	+		Sama_2873	0.51	-1.3
3,411,730	+		Sama_2873	0.51	+1.9
3,411,730	+		Sama_2873	0.51	-1.7
3,411,731	-		Sama_2873	0.52	-0.3
3,411,817	+				-0.3
3,411,818	-				+0.7
3,411,833	+				-0.0
3,411,834	-				-1.2
3,411,845	+				-0.7
3,411,877	-				-0.2
3,411,877	-				-0.1
3,411,882	+				+1.3
3,411,882	+				-0.8
3,411,883	-				+0.5
3,411,883	-				-0.5
3,411,883	-				-0.4
3,411,910	-				-0.3
3,411,964	+		Sama_2874	0.15	+1.1
3,412,111	+		Sama_2874	0.32	-0.3
3,412,112	-		Sama_2874	0.32	-1.0
3,412,220	+		Sama_2874	0.45	-1.9
3,412,220	+		Sama_2874	0.45	+1.6
3,412,220	+		Sama_2874	0.45	-0.0
3,412,220	+		Sama_2874	0.45	-0.1
3,412,220	+		Sama_2874	0.45	-0.5
3,412,220	+		Sama_2874	0.45	-0.2
3,412,220	+		Sama_2874	0.45	+0.6
3,412,221	-		Sama_2874	0.45	+0.9
3,412,221	-		Sama_2874	0.45	-1.3
3,412,221	-		Sama_2874	0.45	-0.3
3,412,221	-		Sama_2874	0.45	+1.2
3,412,221	-		Sama_2874	0.45	-0.3
3,412,221	-		Sama_2874	0.45	-0.3
3,412,221	-		Sama_2874	0.45	+1.6
3,412,221	-		Sama_2874	0.45	-0.2
3,412,221	-		Sama_2874	0.45	+1.8
3,412,221	-		Sama_2874	0.45	+1.0
3,412,221	-		Sama_2874	0.45	-1.7
3,412,226	+		Sama_2874	0.46	-2.0
3,412,226	+		Sama_2874	0.46	+0.9
3,412,226	+		Sama_2874	0.46	-1.3
3,412,226	+		Sama_2874	0.46	+0.9
3,412,227	-		Sama_2874	0.46	+0.5
3,412,227	-		Sama_2874	0.46	-0.9
3,412,227	-		Sama_2874	0.46	+1.9
3,412,274	+		Sama_2874	0.51	+0.3
3,412,274	+		Sama_2874	0.51	+0.3
3,412,274	+		Sama_2874	0.51	-1.3
3,412,275	-		Sama_2874	0.51	+2.3
3,412,275	-		Sama_2874	0.51	-0.3
3,412,275	-		Sama_2874	0.51	-0.7
3,412,275	-		Sama_2874	0.51	+1.5
3,412,275	-		Sama_2874	0.51	+0.9
3,412,275	-		Sama_2874	0.51	-0.8
3,412,284	-		Sama_2874	0.52	+1.0
3,412,284	-		Sama_2874	0.52	+1.7
3,412,333	+		Sama_2874	0.58	+0.7
3,412,333	+		Sama_2874	0.58	-0.9
3,412,333	+		Sama_2874	0.58	+0.8
3,412,333	+		Sama_2874	0.58	-1.2
3,412,333	+		Sama_2874	0.58	+0.7
3,412,333	+		Sama_2874	0.58	-0.5
3,412,333	+		Sama_2874	0.58	-0.6
3,412,333	+		Sama_2874	0.58	-0.4
3,412,334	-		Sama_2874	0.58	-3.0
3,412,334	-		Sama_2874	0.58	+0.8
3,412,334	-		Sama_2874	0.58	-0.3
3,412,334	-		Sama_2874	0.58	-0.5
3,412,334	-		Sama_2874	0.58	-0.3
3,412,334	-		Sama_2874	0.58	-1.0
3,412,336	+		Sama_2874	0.59	+1.0
3,412,336	+		Sama_2874	0.59	+1.1
3,412,336	+		Sama_2874	0.59	+0.7
3,412,336	+		Sama_2874	0.59	+0.8
3,412,336	+		Sama_2874	0.59	-0.1
3,412,336	+		Sama_2874	0.59	+0.7
3,412,336	+		Sama_2874	0.59	-0.1
3,412,336	+		Sama_2874	0.59	+0.7
3,412,336	+		Sama_2874	0.59	+0.5
3,412,336	+		Sama_2874	0.59	-1.5
3,412,336	+		Sama_2874	0.59	+0.9
3,412,337	-		Sama_2874	0.59	+0.2
3,412,337	-		Sama_2874	0.59	-1.7
3,412,337	-		Sama_2874	0.59	+0.4
3,412,337	-		Sama_2874	0.59	-1.3
3,412,337	-		Sama_2874	0.59	+1.5
3,412,337	-		Sama_2874	0.59	+0.0
3,412,337	-		Sama_2874	0.59	-1.1
3,412,337	-		Sama_2874	0.59	+1.4
3,412,337	-		Sama_2874	0.59	+0.7
3,412,337	-		Sama_2874	0.59	-2.3
3,412,337	-		Sama_2874	0.59	-0.8
3,412,337	-		Sama_2874	0.59	+0.2
3,412,337	-		Sama_2874	0.59	+1.0
3,412,337	-		Sama_2874	0.59	+0.4
3,412,408	-		Sama_2874	0.67	+1.7
3,412,481	+		Sama_2874	0.76	-1.8
3,412,481	+		Sama_2874	0.76	+0.6
3,412,528	-		Sama_2874	0.81	-0.0
3,412,546	+		Sama_2874	0.83	-1.4
3,412,558	+		Sama_2874	0.85	+0.6
3,412,558	+		Sama_2874	0.85	-1.0
3,412,558	+		Sama_2874	0.85	-1.0
3,412,558	+		Sama_2874	0.85	-0.3
3,412,559	-		Sama_2874	0.85	+1.0
3,412,559	-		Sama_2874	0.85	+0.7
3,412,559	-		Sama_2874	0.85	+2.9
3,412,559	-		Sama_2874	0.85	-2.2
3,412,559	-		Sama_2874	0.85	-1.4
3,412,563	+		Sama_2874	0.85	-1.3
3,412,563	+		Sama_2874	0.85	-1.0
3,412,563	+		Sama_2874	0.85	-0.6
3,412,563	+		Sama_2874	0.85	-0.7
3,412,563	+		Sama_2874	0.85	-1.9
3,412,563	+		Sama_2874	0.85	-0.3
3,412,563	+		Sama_2874	0.85	-0.3
3,412,563	+		Sama_2874	0.85	-1.6
3,412,563	+		Sama_2874	0.85	+0.1
3,412,563	+		Sama_2874	0.85	-0.3
3,412,564	-		Sama_2874	0.85	-1.6
3,412,564	-		Sama_2874	0.85	-0.2
3,412,564	-		Sama_2874	0.85	-1.4
3,412,564	-		Sama_2874	0.85	+0.3
3,412,564	-		Sama_2874	0.85	+1.6
3,412,564	-		Sama_2874	0.85	+0.7
3,412,564	-		Sama_2874	0.85	+1.7
3,412,564	-		Sama_2874	0.85	+0.9
3,412,564	-		Sama_2874	0.85	+1.1
3,412,564	-		Sama_2874	0.85	-2.0
3,412,564	-		Sama_2874	0.85	+0.6
3,412,564	-		Sama_2874	0.85	-0.4
3,412,564	-		Sama_2874	0.85	-1.0
3,412,564	-		Sama_2874	0.85	-0.1
3,412,564	-		Sama_2874	0.85	-0.6
3,412,568	-		Sama_2874	0.86	+3.2
3,412,581	-		Sama_2874	0.87	+1.0
3,412,581	-		Sama_2874	0.87	+0.3
3,412,581	-		Sama_2874	0.87	-2.3
3,412,581	-		Sama_2874	0.87	-1.0
3,412,650	-				+1.5
3,412,650	-				+0.6
3,412,681	+				+0.4
3,412,682	-				-1.2
3,412,759	-				-0.2
3,412,774	+				+0.1
3,412,823	+				+0.9
3,412,823	+				-0.1
3,412,823	+				+0.3
3,412,823	+				-0.1
3,412,823	+				-1.0
3,412,824	-				+0.7
3,412,824	-				-1.3
3,412,824	-				-0.4
3,412,824	-				+0.4
3,412,824	-				-0.5
3,412,843	-				+1.1
3,412,858	-				+0.4
3,412,858	-				-0.5
3,412,936	+				+1.3
3,412,936	+				+2.0
3,412,936	+				-1.7
3,412,936	+				-1.3
3,412,937	-				-1.0
3,412,937	-				+1.0
3,412,937	-				-0.4
3,412,937	-				+0.4
3,412,937	-				-1.5
3,412,937	-				-0.8
3,412,967	+				+1.6
3,412,992	-				+0.3
3,413,000	+				+0.3
3,413,001	-				-1.3
3,413,001	-				-0.1
3,413,001	-				+0.9
3,413,001	-				+0.2
3,413,001	-				-0.2
3,413,001	-				+0.3
3,413,001	-				+0.6
3,413,042	+				-0.4
3,413,042	+				+0.6
3,413,042	+				+1.0
3,413,042	+				+0.7
3,413,043	-				-1.3
3,413,056	+				-1.6
3,413,056	+				-0.2
3,413,056	+				+0.1
3,413,056	+				-0.4
3,413,056	+				-0.3
3,413,056	+				+0.2
3,413,056	+				+1.1
3,413,057	-				-0.3
3,413,057	-				-0.4
3,413,057	-				+1.4
3,413,057	-				+0.3
3,413,057	-				+1.0
3,413,057	-				+0.5
3,413,086	+				-0.5
3,413,086	+				+0.2
3,413,087	-				+0.6
3,413,087	-				+0.7
3,413,087	-				+2.3
3,413,140	+		Sama_2875	0.11	+1.1
3,413,141	-		Sama_2875	0.11	+0.8
3,413,141	-		Sama_2875	0.11	-0.9
3,413,141	-		Sama_2875	0.11	-1.8
3,413,191	+		Sama_2875	0.14	-0.4
3,413,191	+		Sama_2875	0.14	-0.9
3,413,191	+		Sama_2875	0.14	-0.1
3,413,213	+		Sama_2875	0.15	+0.6
3,413,213	+		Sama_2875	0.15	-1.9
3,413,213	+		Sama_2875	0.15	-0.8
3,413,213	+		Sama_2875	0.15	+0.5
3,413,213	+		Sama_2875	0.15	-1.2
3,413,213	+		Sama_2875	0.15	-1.0
3,413,213	+		Sama_2875	0.15	+0.1
3,413,213	+		Sama_2875	0.15	+0.5
3,413,213	+		Sama_2875	0.15	+0.6
3,413,213	+		Sama_2875	0.15	-1.5
3,413,214	-		Sama_2875	0.15	+0.1
3,413,214	-		Sama_2875	0.15	+1.0
3,413,214	-		Sama_2875	0.15	+1.3
3,413,214	-		Sama_2875	0.15	+0.3
3,413,214	-		Sama_2875	0.15	+0.5
3,413,214	-		Sama_2875	0.15	-2.2
3,413,214	-		Sama_2875	0.15	+0.6
3,413,214	-		Sama_2875	0.15	-0.4
3,413,214	-		Sama_2875	0.15	+0.1
3,413,214	-		Sama_2875	0.15	-1.6
3,413,214	-		Sama_2875	0.15	+1.1
3,413,214	-		Sama_2875	0.15	-0.5
3,413,214	-		Sama_2875	0.15	-0.1
3,413,251	+		Sama_2875	0.16	-1.5
3,413,251	+		Sama_2875	0.16	+0.8
3,413,251	+		Sama_2875	0.16	+1.7
3,413,251	+		Sama_2875	0.16	+0.3
3,413,252	-		Sama_2875	0.16	-1.0
3,413,287	+		Sama_2875	0.18	+0.9
3,413,287	+		Sama_2875	0.18	+2.1
3,413,287	+		Sama_2875	0.18	-1.0
3,413,287	+		Sama_2875	0.18	+0.8
3,413,288	-		Sama_2875	0.18	-2.0
3,413,288	-		Sama_2875	0.18	+0.3
3,413,293	+		Sama_2875	0.18	+0.9
3,413,293	+		Sama_2875	0.18	-0.8
3,413,293	+		Sama_2875	0.18	-0.8
3,413,293	+		Sama_2875	0.18	-1.0
3,413,294	-		Sama_2875	0.18	-1.3
3,413,294	-		Sama_2875	0.18	+1.6
3,413,294	-		Sama_2875	0.18	+0.6
3,413,294	-		Sama_2875	0.18	+0.0
3,413,294	-		Sama_2875	0.18	-0.0
3,413,441	+		Sama_2875	0.25	-1.6
3,413,441	+		Sama_2875	0.25	-1.0
3,413,441	+		Sama_2875	0.25	-0.8
3,413,442	-		Sama_2875	0.25	+0.8
3,413,442	-		Sama_2875	0.25	+0.2
3,413,442	-		Sama_2875	0.25	-1.3
3,413,442	-		Sama_2875	0.25	+0.6
3,413,472	+		Sama_2875	0.26	-0.5
3,413,507	+		Sama_2875	0.28	-1.0
3,413,507	+		Sama_2875	0.28	+0.7
3,413,507	+		Sama_2875	0.28	+0.5
3,413,507	+		Sama_2875	0.28	-1.4
3,413,507	+		Sama_2875	0.28	-1.7
3,413,508	-		Sama_2875	0.28	-0.1
3,413,508	-		Sama_2875	0.28	-1.5
3,413,508	-		Sama_2875	0.28	-0.2
3,413,509	+		Sama_2875	0.28	+0.5
3,413,509	+		Sama_2875	0.28	+1.5
3,413,509	+		Sama_2875	0.28	+0.6
3,413,509	+		Sama_2875	0.28	-0.4
3,413,509	+		Sama_2875	0.28	-0.4
3,413,509	+		Sama_2875	0.28	+2.3
3,413,509	+		Sama_2875	0.28	-2.4
3,413,509	+		Sama_2875	0.28	-0.3
3,413,509	+		Sama_2875	0.28	-0.8
3,413,509	+		Sama_2875	0.28	-0.4
3,413,509	+		Sama_2875	0.28	+1.2
3,413,509	+		Sama_2875	0.28	+0.1
3,413,510	-		Sama_2875	0.28	-0.6
3,413,510	-		Sama_2875	0.28	+0.5
3,413,510	-		Sama_2875	0.28	+0.8
3,413,510	-		Sama_2875	0.28	-0.1
3,413,510	-		Sama_2875	0.28	-0.1
3,413,510	-		Sama_2875	0.28	+0.1
3,413,510	-		Sama_2875	0.28	-0.6
3,413,510	-		Sama_2875	0.28	-2.9
3,413,510	-		Sama_2875	0.28	-0.1
3,413,510	-		Sama_2875	0.28	-0.7
3,413,510	-		Sama_2875	0.28	+1.0
3,413,510	-		Sama_2875	0.28	-0.4
3,413,510	-		Sama_2875	0.28	+1.9
3,413,510	-		Sama_2875	0.28	+1.3
3,413,560	+		Sama_2875	0.30	+0.5
3,413,561	-		Sama_2875	0.30	-0.1
3,413,567	+		Sama_2875	0.31	+0.1
3,413,567	+		Sama_2875	0.31	-0.2
3,413,567	+		Sama_2875	0.31	-0.3
3,413,567	+		Sama_2875	0.31	+0.8
3,413,567	+		Sama_2875	0.31	+0.5
3,413,568	-		Sama_2875	0.31	+0.1
3,413,568	-		Sama_2875	0.31	-0.7
3,413,568	-		Sama_2875	0.31	-0.5
3,413,568	-		Sama_2875	0.31	-0.8
3,413,568	-		Sama_2875	0.31	+1.6
3,413,568	-		Sama_2875	0.31	-1.5
3,413,568	-		Sama_2875	0.31	-1.5
3,413,569	+		Sama_2875	0.31	+1.6
3,413,570	-		Sama_2875	0.31	-1.3
3,413,570	-		Sama_2875	0.31	+0.4
3,413,570	-		Sama_2875	0.31	+0.3
3,413,570	-		Sama_2875	0.31	-1.5
3,413,596	+		Sama_2875	0.32	+0.8
3,413,596	+		Sama_2875	0.32	+0.7
3,413,596	+		Sama_2875	0.32	+0.4
3,413,596	+		Sama_2875	0.32	+0.6
3,413,596	+		Sama_2875	0.32	-0.4
3,413,596	+		Sama_2875	0.32	+0.0
3,413,596	+		Sama_2875	0.32	+0.0
3,413,596	+		Sama_2875	0.32	+0.0
3,413,596	+		Sama_2875	0.32	+0.9
3,413,596	+		Sama_2875	0.32	+0.4
3,413,597	-		Sama_2875	0.32	-0.0
3,413,597	-		Sama_2875	0.32	+0.5
3,413,597	-		Sama_2875	0.32	+0.5
3,413,597	-		Sama_2875	0.32	-0.3
3,413,597	-		Sama_2875	0.32	-0.4
3,413,597	-		Sama_2875	0.32	+2.2
3,413,597	-		Sama_2875	0.32	+1.9
3,413,597	-		Sama_2875	0.32	-1.9
3,413,597	-		Sama_2875	0.32	+3.0
3,413,597	-		Sama_2875	0.32	-1.0
3,413,597	-		Sama_2875	0.32	+0.0
3,413,600	+		Sama_2875	0.32	+0.6
3,413,600	+		Sama_2875	0.32	+0.1
3,413,600	+		Sama_2875	0.32	-1.4
3,413,600	+		Sama_2875	0.32	+0.0
3,413,600	+		Sama_2875	0.32	-0.5
3,413,600	+		Sama_2875	0.32	-2.3
3,413,600	+		Sama_2875	0.32	+0.9
3,413,600	+		Sama_2875	0.32	+0.1
3,413,600	+		Sama_2875	0.32	+0.4
3,413,600	+		Sama_2875	0.32	+3.5
3,413,601	-		Sama_2875	0.32	-0.6
3,413,601	-		Sama_2875	0.32	+0.8
3,413,601	-		Sama_2875	0.32	+0.4
3,413,601	-		Sama_2875	0.32	+1.1
3,413,601	-		Sama_2875	0.32	-0.8
3,413,601	-		Sama_2875	0.32	-1.1
3,413,601	-		Sama_2875	0.32	-2.0
3,413,601	-		Sama_2875	0.32	+1.3
3,413,601	-		Sama_2875	0.32	-0.7
3,413,601	-		Sama_2875	0.32	-0.8
3,413,601	-		Sama_2875	0.32	-2.0
3,413,601	-		Sama_2875	0.32	-0.0
3,413,601	-		Sama_2875	0.32	+1.1
3,413,639	+		Sama_2875	0.34	-0.3
3,413,640	-		Sama_2875	0.34	-0.0