Strain Fitness in Shewanella amazonensis SB2B around Sama_2868

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
3,405,534	+		Sama_2866	0.88	+1.0
3,405,535	-		Sama_2866	0.88	-1.0
3,405,543	-				-0.2
3,405,558	-				+2.1
3,405,558	-				+0.3
3,405,582	+				+1.5
3,405,582	+				-1.5
3,405,582	+				-1.5
3,405,583	-				+0.4
3,405,583	-				-0.8
3,405,583	-				+1.0
3,405,583	-				-0.3
3,405,599	+				+0.5
3,405,600	-				-1.0
3,405,639	+				-0.6
3,405,746	+		Sama_2867	0.10	-1.7
3,405,781	+		Sama_2867	0.15	-0.1
3,405,781	+		Sama_2867	0.15	-2.4
3,405,782	-		Sama_2867	0.15	-0.5
3,405,782	-		Sama_2867	0.15	-0.3
3,405,828	+		Sama_2867	0.22	-0.7
3,405,836	+		Sama_2867	0.23	+0.5
3,405,836	+		Sama_2867	0.23	-0.8
3,405,862	+		Sama_2867	0.27	-0.1
3,405,862	+		Sama_2867	0.27	+1.2
3,405,862	+		Sama_2867	0.27	+0.8
3,405,863	-		Sama_2867	0.28	+0.7
3,405,863	-		Sama_2867	0.28	-2.1
3,405,872	+		Sama_2867	0.29	-0.7
3,405,872	+		Sama_2867	0.29	+0.4
3,405,872	+		Sama_2867	0.29	-1.9
3,405,872	+		Sama_2867	0.29	-0.8
3,405,872	+		Sama_2867	0.29	+0.4
3,405,872	+		Sama_2867	0.29	+0.1
3,405,873	-		Sama_2867	0.29	-0.3
3,405,894	+		Sama_2867	0.32	+0.7
3,405,916	-		Sama_2867	0.35	-0.9
3,405,992	+		Sama_2867	0.47	+1.1
3,405,999	+		Sama_2867	0.48	+3.5
3,405,999	+		Sama_2867	0.48	-0.0
3,406,000	-		Sama_2867	0.48	+1.2
3,406,000	-		Sama_2867	0.48	-0.1
3,406,046	+		Sama_2867	0.55	-0.8
3,406,046	+		Sama_2867	0.55	-0.5
3,406,046	+		Sama_2867	0.55	+0.9
3,406,046	+		Sama_2867	0.55	-2.4
3,406,046	+		Sama_2867	0.55	-0.2
3,406,046	+		Sama_2867	0.55	+0.0
3,406,047	-		Sama_2867	0.55	+1.5
3,406,047	-		Sama_2867	0.55	-1.4
3,406,047	-		Sama_2867	0.55	+0.9
3,406,047	-		Sama_2867	0.55	-0.3
3,406,047	-		Sama_2867	0.55	+1.3
3,406,047	-		Sama_2867	0.55	+2.4
3,406,047	-		Sama_2867	0.55	+0.5
3,406,047	-		Sama_2867	0.55	-2.4
3,406,047	-		Sama_2867	0.55	-0.7
3,406,114	-		Sama_2867	0.65	-0.0
3,406,172	-		Sama_2867	0.74	+0.5
3,406,228	+		Sama_2867	0.82	+0.8
3,406,229	-		Sama_2867	0.82	-1.5
3,406,229	-		Sama_2867	0.82	-0.1
3,406,229	-		Sama_2867	0.82	+0.4
3,406,233	+		Sama_2867	0.83	+0.3
3,406,233	+		Sama_2867	0.83	-0.1
3,406,233	+		Sama_2867	0.83	+0.3
3,406,234	-		Sama_2867	0.83	-1.3
3,406,341	-				+0.4
3,406,364	-				+1.1
3,406,437	+		Sama_2868	0.13	-0.7
3,406,438	-		Sama_2868	0.13	+2.5
3,406,459	+		Sama_2868	0.18	+1.3
3,406,460	-		Sama_2868	0.18	-0.6
3,406,460	-		Sama_2868	0.18	+0.7
3,406,559	+		Sama_2868	0.40	-1.7
3,406,559	+		Sama_2868	0.40	-0.9
3,406,560	-		Sama_2868	0.41	-0.3
3,406,569	+		Sama_2868	0.43	-2.5
3,406,576	-		Sama_2868	0.44	-0.1
3,406,576	-		Sama_2868	0.44	+0.0
3,406,577	+		Sama_2868	0.45	+0.2
3,406,577	+		Sama_2868	0.45	-3.0
3,406,577	+		Sama_2868	0.45	-2.2
3,406,600	-		Sama_2868	0.50	+0.5
3,406,600	-		Sama_2868	0.50	-1.5
3,406,610	-		Sama_2868	0.52	-1.2
3,406,678	-		Sama_2868	0.67	-1.0
3,406,694	+		Sama_2868	0.71	+1.2
3,406,695	-		Sama_2868	0.71	+0.6
3,406,695	-		Sama_2868	0.71	-1.0
3,406,699	+		Sama_2868	0.72	+1.9
3,406,700	-		Sama_2868	0.72	-0.2
3,406,708	-		Sama_2868	0.74	+1.5
3,406,739	+		Sama_2868	0.81	-0.4
3,406,740	-		Sama_2868	0.81	-1.0
3,406,740	-		Sama_2868	0.81	+3.6
3,406,793	-				-0.2
3,406,795	+				+0.3
3,406,795	+				-0.8
3,406,796	-				-0.3
3,406,808	+				-0.1
3,406,824	+				-2.0
3,406,824	+				+1.8
3,406,825	-				+1.2
3,406,825	-				+0.8
3,406,830	+				+0.5
3,406,830	+				+0.1
3,406,830	+				+0.2
3,406,830	+				+0.5
3,406,830	+				+0.7
3,406,830	+				+0.7
3,406,831	-				+0.0
3,406,831	-				+0.1
3,406,843	+				+0.5
3,406,855	-				-0.2
3,406,859	+				+2.0
3,406,859	+				-0.1
3,406,860	-				+1.1
3,406,860	-				-1.0
3,406,860	-				-1.2
3,406,912	+				-0.2
3,406,912	+				-1.3
3,406,927	-				-0.9
3,406,927	-				-0.3
3,406,927	-				-0.1
3,406,927	-				-0.4
3,406,927	-				-0.7
3,406,929	+				-0.4
3,406,930	-				+0.7
3,406,945	+				-1.5
3,406,945	+				+1.9
3,406,946	-				-1.3
3,406,963	+				-1.8
3,406,963	+				+0.8
3,406,963	+				-0.1
3,406,964	-				-2.0
3,406,964	-				+0.1
3,406,993	+				-1.0
3,406,993	+				-0.0
3,406,994	-				+0.4
3,406,994	-				-2.0
3,407,031	+				-2.0
3,407,032	-				-0.3
3,407,086	+		Sama_2869	0.11	-2.5
3,407,086	+		Sama_2869	0.11	-1.7
3,407,086	+		Sama_2869	0.11	-3.2
3,407,086	+		Sama_2869	0.11	-2.9
3,407,086	+		Sama_2869	0.11	-3.5
3,407,086	+		Sama_2869	0.11	-1.7
3,407,087	-		Sama_2869	0.11	-2.2
3,407,087	-		Sama_2869	0.11	-3.1
3,407,087	-		Sama_2869	0.11	-1.0
3,407,112	+		Sama_2869	0.14	-3.5
3,407,148	-		Sama_2869	0.19	-1.9
3,407,170	-		Sama_2869	0.21	-2.8
3,407,170	-		Sama_2869	0.21	-1.3
3,407,222	-		Sama_2869	0.28	-2.3
3,407,222	-		Sama_2869	0.28	-3.9
3,407,329	+		Sama_2869	0.41	-3.2
3,407,329	+		Sama_2869	0.41	-4.1
3,407,330	-		Sama_2869	0.41	-1.7
3,407,330	-		Sama_2869	0.41	-3.4
3,407,340	+		Sama_2869	0.42	-3.6
3,407,340	+		Sama_2869	0.42	-3.9
3,407,340	+		Sama_2869	0.42	-1.7
3,407,340	+		Sama_2869	0.42	-4.1
3,407,340	+		Sama_2869	0.42	-0.3
3,407,340	+		Sama_2869	0.42	-4.2
3,407,341	-		Sama_2869	0.42	-1.4
3,407,341	-		Sama_2869	0.42	-2.3
3,407,341	-		Sama_2869	0.42	-3.0
3,407,341	-		Sama_2869	0.42	-0.3
3,407,359	+		Sama_2869	0.44	-2.7
3,407,359	+		Sama_2869	0.44	-2.8
3,407,359	+		Sama_2869	0.44	-4.2
3,407,360	-		Sama_2869	0.44	-3.9
3,407,360	-		Sama_2869	0.44	-1.3
3,407,360	-		Sama_2869	0.44	-0.3
3,407,393	-		Sama_2869	0.48	-1.7
3,407,393	-		Sama_2869	0.48	-4.3
3,407,393	-		Sama_2869	0.48	-1.9
3,407,393	-		Sama_2869	0.48	-4.6
3,407,393	-		Sama_2869	0.48	-1.7
3,407,450	+		Sama_2869	0.55	-3.5
3,407,450	+		Sama_2869	0.55	-0.0
3,407,502	-		Sama_2869	0.62	-4.0
3,407,502	-		Sama_2869	0.62	-1.9
3,407,577	-		Sama_2869	0.71	-1.3
3,407,608	+		Sama_2869	0.74	-2.4
3,407,609	-		Sama_2869	0.75	-1.0
3,407,609	-		Sama_2869	0.75	-3.9
3,407,609	-		Sama_2869	0.75	-3.6
3,407,609	-		Sama_2869	0.75	-3.6
3,407,701	+		Sama_2869	0.86	-1.3
3,407,702	-		Sama_2869	0.86	-3.6
3,407,796	+				-3.2
3,407,797	-				-3.2
3,407,797	-				-1.0