Strain Fitness in Shewanella amazonensis SB2B around Sama_2390

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
2,868,840	-				-1.1
2,868,844	+				-2.6
2,868,845	-				-0.0
2,868,845	-				-1.6
2,868,928	-		Sama_2389	0.18	-0.8
2,868,928	-		Sama_2389	0.18	-0.5
2,868,936	+		Sama_2389	0.19	-1.8
2,868,937	-		Sama_2389	0.19	-1.2
2,869,008	+		Sama_2389	0.27	+1.0
2,869,009	-		Sama_2389	0.27	+1.0
2,869,055	-		Sama_2389	0.32	-1.7
2,869,055	-		Sama_2389	0.32	-1.5
2,869,078	+		Sama_2389	0.35	-0.2
2,869,155	+		Sama_2389	0.44	-0.8
2,869,156	-		Sama_2389	0.44	-1.6
2,869,156	-		Sama_2389	0.44	-0.5
2,869,156	-		Sama_2389	0.44	-0.3
2,869,156	-		Sama_2389	0.44	-0.8
2,869,157	+		Sama_2389	0.44	-1.7
2,869,157	+		Sama_2389	0.44	-2.0
2,869,157	+		Sama_2389	0.44	+0.4
2,869,158	-		Sama_2389	0.44	+0.1
2,869,158	-		Sama_2389	0.44	-0.6
2,869,158	-		Sama_2389	0.44	-0.0
2,869,158	-		Sama_2389	0.44	-0.6
2,869,158	-		Sama_2389	0.44	-1.6
2,869,295	+		Sama_2389	0.60	+0.4
2,869,314	+		Sama_2389	0.62	+0.2
2,869,319	-		Sama_2389	0.62	+1.2
2,869,319	-		Sama_2389	0.62	-2.9
2,869,339	+		Sama_2389	0.65	+0.6
2,869,339	+		Sama_2389	0.65	-0.3
2,869,340	-		Sama_2389	0.65	-0.6
2,869,340	-		Sama_2389	0.65	+0.8
2,869,398	+		Sama_2389	0.71	+1.2
2,869,398	+		Sama_2389	0.71	+0.9
2,869,399	-		Sama_2389	0.71	-1.3
2,869,399	-		Sama_2389	0.71	+0.7
2,869,401	+		Sama_2389	0.72	+0.2
2,869,402	-		Sama_2389	0.72	-0.5
2,869,402	-		Sama_2389	0.72	-2.0
2,869,402	-		Sama_2389	0.72	-0.0
2,869,402	-		Sama_2389	0.72	-1.5
2,869,494	+		Sama_2389	0.82	+0.4
2,869,495	-		Sama_2389	0.82	+1.0
2,869,495	-		Sama_2389	0.82	+0.5
2,869,495	-		Sama_2389	0.82	+0.4
2,869,500	+		Sama_2389	0.83	-1.5
2,869,568	+				-1.9
2,869,645	-				-0.3
2,869,802	-				-2.4
2,869,822	+				-1.4
2,869,823	-				+0.8
2,869,828	+				+1.1
2,869,828	+				-0.4
2,869,828	+				+0.1
2,869,828	+				+0.3
2,869,828	+				-1.6
2,869,829	-				-1.5
2,869,829	-				-2.2
2,869,836	+				+1.2
2,869,836	+				-1.4
2,869,837	-				+0.5
2,869,837	-				+2.5
2,869,837	-				+0.7
2,869,837	-				+1.5
2,869,842	+				-0.8
2,869,842	+				+0.3
2,869,843	-				-1.6
2,869,843	-				+1.4
2,869,930	+				+0.3
2,869,930	+				+0.3
2,869,931	-				-1.1
2,869,931	-				+1.2
2,869,938	+				-0.3
2,869,938	+				-0.0
2,869,968	-		Sama_2390	0.12	+0.4
2,870,168	-		Sama_2390	0.28	+1.4
2,870,176	+		Sama_2390	0.29	+1.5
2,870,221	+		Sama_2390	0.33	+1.3
2,870,221	+		Sama_2390	0.33	-1.4
2,870,221	+		Sama_2390	0.33	+0.6
2,870,221	+		Sama_2390	0.33	+0.3
2,870,222	-		Sama_2390	0.33	-0.0
2,870,222	-		Sama_2390	0.33	+4.2
2,870,222	-		Sama_2390	0.33	+2.1
2,870,273	+		Sama_2390	0.37	+0.7
2,870,273	+		Sama_2390	0.37	-0.9
2,870,273	+		Sama_2390	0.37	+1.3
2,870,273	+		Sama_2390	0.37	-0.2
2,870,274	-		Sama_2390	0.37	-0.2
2,870,274	-		Sama_2390	0.37	-2.2
2,870,274	-		Sama_2390	0.37	+1.1
2,870,274	-		Sama_2390	0.37	+0.5
2,870,274	-		Sama_2390	0.37	+1.1
2,870,274	-		Sama_2390	0.37	+1.2
2,870,274	-		Sama_2390	0.37	-0.5
2,870,274	-		Sama_2390	0.37	+1.7
2,870,274	-		Sama_2390	0.37	-0.6
2,870,274	-		Sama_2390	0.37	+0.5
2,870,274	-		Sama_2390	0.37	+0.5
2,870,277	+		Sama_2390	0.38	-0.2
2,870,277	+		Sama_2390	0.38	+1.2
2,870,277	+		Sama_2390	0.38	-1.9
2,870,278	-		Sama_2390	0.38	+1.0
2,870,311	-		Sama_2390	0.40	-0.0
2,870,311	-		Sama_2390	0.40	+1.8
2,870,331	+		Sama_2390	0.42	-1.6
2,870,332	-		Sama_2390	0.42	+0.8
2,870,332	-		Sama_2390	0.42	+0.2
2,870,332	-		Sama_2390	0.42	-0.5
2,870,362	-		Sama_2390	0.45	+0.4
2,870,374	+		Sama_2390	0.46	+1.5
2,870,374	+		Sama_2390	0.46	-0.1
2,870,374	+		Sama_2390	0.46	-0.5
2,870,375	-		Sama_2390	0.46	-0.2
2,870,375	-		Sama_2390	0.46	+1.6
2,870,375	-		Sama_2390	0.46	+0.2
2,870,410	+		Sama_2390	0.49	-0.9
2,870,410	+		Sama_2390	0.49	-2.2
2,870,411	-		Sama_2390	0.49	+0.2
2,870,411	-		Sama_2390	0.49	+1.5
2,870,415	+		Sama_2390	0.49	+0.0
2,870,444	+		Sama_2390	0.52	+1.0
2,870,444	+		Sama_2390	0.52	+0.2
2,870,445	-		Sama_2390	0.52	-0.6
2,870,445	-		Sama_2390	0.52	+0.3
2,870,452	+		Sama_2390	0.52	+1.5
2,870,452	+		Sama_2390	0.52	-1.4
2,870,488	+		Sama_2390	0.55	+0.5
2,870,541	+		Sama_2390	0.60	-0.9
2,870,541	+		Sama_2390	0.60	+0.4
2,870,542	-		Sama_2390	0.60	-0.7
2,870,542	-		Sama_2390	0.60	-0.5
2,870,561	+		Sama_2390	0.61	-0.0
2,870,561	+		Sama_2390	0.61	-0.0
2,870,561	+		Sama_2390	0.61	+1.5
2,870,561	+		Sama_2390	0.61	-0.0
2,870,561	+		Sama_2390	0.61	+0.6
2,870,561	+		Sama_2390	0.61	-0.9
2,870,561	+		Sama_2390	0.61	+0.0
2,870,562	-		Sama_2390	0.61	-0.6
2,870,562	-		Sama_2390	0.61	+1.1
2,870,612	-		Sama_2390	0.66	+0.9
2,870,677	+		Sama_2390	0.71	-0.4
2,870,677	+		Sama_2390	0.71	+0.5
2,870,690	+		Sama_2390	0.72	-1.0
2,870,691	-		Sama_2390	0.72	-0.3
2,870,768	+		Sama_2390	0.79	-2.0
2,870,768	+		Sama_2390	0.79	-2.0
2,870,769	-		Sama_2390	0.79	-0.8
2,870,769	-		Sama_2390	0.79	+0.1
2,870,792	+		Sama_2390	0.81	-0.9
2,870,793	-		Sama_2390	0.81	+0.3
2,870,793	-		Sama_2390	0.81	-1.0
2,870,814	+		Sama_2390	0.82	+1.2
2,870,814	+		Sama_2390	0.82	+0.4
2,870,814	+		Sama_2390	0.82	-2.7
2,870,814	+		Sama_2390	0.82	+1.2
2,870,815	-		Sama_2390	0.83	-0.0
2,870,815	-		Sama_2390	0.83	+1.2
2,870,815	-		Sama_2390	0.83	-0.6
2,870,842	+		Sama_2390	0.85	-1.9
2,870,852	-		Sama_2390	0.86	-2.2
2,870,931	+				-1.6
2,870,931	+				-0.6
2,870,931	+				-0.5
2,870,934	+				+0.2
2,870,934	+				-2.2
2,870,934	+				-0.7
2,870,977	+				-1.5
2,871,015	+				-0.5
2,871,015	+				-0.3
2,871,016	-				-0.7
2,871,016	-				+0.7
2,871,023	+				-0.8
2,871,023	+				-2.0
2,871,024	-				+1.0
2,871,057	-				+1.0
2,871,057	-				+1.2
2,871,057	-				-1.5
2,871,068	+				+0.5
2,871,068	+				-0.4
2,871,068	+				+0.6
2,871,068	+				+2.8
2,871,068	+				+1.0
2,871,068	+				+1.0
2,871,068	+				-1.6
2,871,068	+				-0.4
2,871,068	+				+0.2
2,871,069	-				-1.8
2,871,069	-				-1.2
2,871,069	-				+0.6
2,871,069	-				+0.1
2,871,069	-				+0.2
2,871,069	-				+1.7
2,871,069	-				+1.6
2,871,069	-				-2.2
2,871,069	-				+0.4
2,871,069	-				-2.0
2,871,082	-				-0.3
2,871,082	-				+0.2
2,871,094	+				+0.5
2,871,113	-				+1.4
2,871,113	-				-1.2
2,871,250	-		Sama_2391	0.12	-0.3
2,871,250	-		Sama_2391	0.12	-1.9
2,871,312	+		Sama_2391	0.18	-2.5
2,871,312	+		Sama_2391	0.18	-1.9
2,871,312	+		Sama_2391	0.18	-1.0
2,871,313	-		Sama_2391	0.18	+0.7
2,871,324	+		Sama_2391	0.19	-1.0
2,871,324	+		Sama_2391	0.19	+0.8
2,871,324	+		Sama_2391	0.19	+1.1
2,871,325	-		Sama_2391	0.19	+1.1
2,871,400	+		Sama_2391	0.25	-0.5
2,871,400	+		Sama_2391	0.25	+0.1
2,871,430	+		Sama_2391	0.28	-0.8
2,871,430	+		Sama_2391	0.28	+0.6
2,871,431	-		Sama_2391	0.28	-0.7
2,871,431	-		Sama_2391	0.28	+2.2
2,871,431	-		Sama_2391	0.28	+0.0
2,871,485	-		Sama_2391	0.32	+0.6
2,871,485	-		Sama_2391	0.32	+0.7
2,871,601	-		Sama_2391	0.42	-0.4
2,871,609	+		Sama_2391	0.43	-1.9
2,871,614	+		Sama_2391	0.43	+0.1
2,871,634	-		Sama_2391	0.45	+0.1
2,871,678	+		Sama_2391	0.49	+2.5
2,871,679	-		Sama_2391	0.49	-2.2
2,871,694	+		Sama_2391	0.50	+1.1
2,871,695	-		Sama_2391	0.50	+1.1
2,871,695	-		Sama_2391	0.50	-0.0
2,871,695	-		Sama_2391	0.50	-1.2
2,871,695	-		Sama_2391	0.50	+0.9
2,871,695	-		Sama_2391	0.50	-2.1
2,871,695	-		Sama_2391	0.50	-0.3
2,871,704	-		Sama_2391	0.51	+2.8
2,871,704	-		Sama_2391	0.51	+0.7
2,871,704	-		Sama_2391	0.51	-0.3
2,871,814	+		Sama_2391	0.60	-0.0
2,871,823	+		Sama_2391	0.61	-0.3
2,871,823	+		Sama_2391	0.61	+1.4
2,871,823	+		Sama_2391	0.61	+0.8
2,871,824	-		Sama_2391	0.61	+2.1
2,871,824	-		Sama_2391	0.61	+1.7
2,871,824	-		Sama_2391	0.61	-0.4
2,871,881	+		Sama_2391	0.66	-0.0
2,871,888	-		Sama_2391	0.67	+0.3
2,871,888	-		Sama_2391	0.67	-0.1
2,871,899	+		Sama_2391	0.68	+0.4
2,871,900	-		Sama_2391	0.68	+0.3
2,871,903	+		Sama_2391	0.68	-0.5
2,871,903	+		Sama_2391	0.68	+0.2
2,871,904	-		Sama_2391	0.68	-1.3
2,871,905	+		Sama_2391	0.68	+1.5
2,871,905	+		Sama_2391	0.68	+1.4
2,871,905	+		Sama_2391	0.68	+1.8
2,871,905	+		Sama_2391	0.68	-2.0
2,871,906	-		Sama_2391	0.68	+0.7
2,871,906	-		Sama_2391	0.68	-0.3
2,871,906	-		Sama_2391	0.68	-0.1
2,871,906	-		Sama_2391	0.68	-0.5
2,871,906	-		Sama_2391	0.68	+1.1
2,871,906	-		Sama_2391	0.68	-0.7
2,871,914	-		Sama_2391	0.69	-0.4