Strain Fitness in Shewanella amazonensis SB2B around Sama_2072

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
2,508,206	-		Sama_2071	0.74	-1.9
2,508,234	-		Sama_2071	0.75	+2.5
2,508,370	+		Sama_2071	0.79	-1.9
2,508,460	+		Sama_2071	0.82	-2.7
2,508,682	+		Sama_2071	0.90	-3.9
2,508,761	+				-0.9
2,508,832	-				-1.3
2,508,859	-				-0.2
2,508,868	+				-2.4
2,508,868	+				-1.8
2,508,869	-				-1.4
2,508,869	-				-1.7
2,508,884	+				-0.4
2,508,885	-				-0.2
2,508,898	-				-1.1
2,508,905	-				-0.4
2,508,905	-				-1.6
2,508,908	+				-0.7
2,508,909	-				-0.1
2,508,909	-				-1.1
2,508,909	-				-0.7
2,508,954	+				-1.9
2,508,954	+				-0.8
2,508,954	+				-0.7
2,508,955	-				-1.1
2,508,955	-				-1.5
2,508,955	-				+0.2
2,508,956	+				-0.5
2,508,956	+				-2.2
2,508,957	-				-1.0
2,509,032	+				-2.1
2,509,032	+				-1.5
2,509,033	-				-0.8
2,509,034	+				-0.8
2,509,035	-				-1.4
2,509,121	+				-1.4
2,509,122	-				-3.0
2,509,122	-				-1.7
2,509,122	-				-1.7
2,509,125	+				+0.3
2,509,125	+				-2.5
2,509,125	+				-1.7
2,509,126	-				-3.2
2,509,126	-				-2.1
2,509,126	-				-0.3
2,509,126	-				-3.5
2,509,126	-				-1.9
2,509,126	-				-1.6
2,509,126	-				-2.7
2,509,126	-				-1.0
2,509,136	+				-3.5
2,509,147	-				-0.9
2,509,147	-				-1.7
2,509,201	+				-1.4
2,509,211	+				-2.5
2,509,212	-				-1.7
2,509,311	-				+0.9
2,509,319	-				-2.1
2,509,550	+		Sama_2072	0.16	-0.7
2,509,551	-		Sama_2072	0.16	-3.3
2,509,551	-		Sama_2072	0.16	-2.9
2,509,719	-		Sama_2072	0.23	-1.1
2,509,799	-		Sama_2072	0.26	-2.5
2,509,823	+		Sama_2072	0.27	-1.9
2,509,824	-		Sama_2072	0.27	-0.1
2,509,890	+		Sama_2072	0.30	-2.1
2,509,895	-		Sama_2072	0.30	-1.1
2,509,895	-		Sama_2072	0.30	-0.7
2,509,895	-		Sama_2072	0.30	-2.2
2,509,895	-		Sama_2072	0.30	-1.1
2,509,898	-		Sama_2072	0.30	-1.9
2,509,916	-		Sama_2072	0.31	-1.9
2,509,995	-		Sama_2072	0.34	-1.9
2,510,100	+		Sama_2072	0.39	-0.1
2,510,100	+		Sama_2072	0.39	-0.1
2,510,101	-		Sama_2072	0.39	-3.1
2,510,113	-		Sama_2072	0.39	-2.9
2,510,171	-		Sama_2072	0.42	-1.7
2,510,171	-		Sama_2072	0.42	-0.6
2,510,175	-		Sama_2072	0.42	-1.4
2,510,175	-		Sama_2072	0.42	-1.4
2,510,176	+		Sama_2072	0.42	-3.6
2,510,203	-		Sama_2072	0.43	-1.7
2,510,482	-		Sama_2072	0.55	-1.1
2,510,482	-		Sama_2072	0.55	-2.8
2,510,568	+		Sama_2072	0.59	-2.1
2,510,568	+		Sama_2072	0.59	-2.1
2,510,571	-		Sama_2072	0.59	-2.5
2,510,571	-		Sama_2072	0.59	-2.7
2,510,571	-		Sama_2072	0.59	-1.7
2,510,571	-		Sama_2072	0.59	-1.4
2,510,572	+		Sama_2072	0.59	-1.9
2,510,573	-		Sama_2072	0.59	-3.1
2,510,573	-		Sama_2072	0.59	-1.1
2,510,627	-		Sama_2072	0.61	-1.1
2,510,682	-		Sama_2072	0.63	-1.1
2,510,759	-		Sama_2072	0.67	-0.1
2,510,799	+		Sama_2072	0.68	-0.7
2,510,800	-		Sama_2072	0.68	-1.4
2,510,869	-		Sama_2072	0.71	-0.1
2,510,869	-		Sama_2072	0.71	-0.7
2,510,869	-		Sama_2072	0.71	-0.7
2,510,891	-		Sama_2072	0.72	-2.2
2,510,938	-		Sama_2072	0.74	-0.1
2,510,938	-		Sama_2072	0.74	+0.9
2,510,938	-		Sama_2072	0.74	-1.7
2,511,075	+		Sama_2072	0.80	-2.4
2,511,076	-		Sama_2072	0.80	-1.7
2,511,186	+		Sama_2072	0.85	-2.2
2,511,186	+		Sama_2072	0.85	-2.4
2,511,230	-		Sama_2072	0.87	-2.8
2,511,320	+				-1.5
2,511,534	+				-1.4
2,511,534	+				-1.7
2,511,535	-				-1.7
2,511,538	+				-1.2
2,511,539	-				-0.7
2,511,539	-				-2.2
2,511,539	-				-1.4
2,511,554	+				-2.4
2,511,573	-				-1.7
2,511,660	-				-2.8
2,511,682	-				-2.9
2,511,740	+				-2.4
2,511,775	-		Sama_2073	0.13	-1.5
2,511,827	+		Sama_2073	0.19	-2.5
2,511,840	+		Sama_2073	0.21	-2.9
2,511,867	-		Sama_2073	0.24	-0.9
2,511,867	-		Sama_2073	0.24	-1.4
2,511,867	-		Sama_2073	0.24	-2.0
2,511,903	+		Sama_2073	0.28	-2.4
2,511,903	+		Sama_2073	0.28	-1.1
2,511,903	+		Sama_2073	0.28	-1.9
2,511,903	+		Sama_2073	0.28	-3.2
2,511,903	+		Sama_2073	0.28	-0.7
2,511,907	+		Sama_2073	0.29	-1.7
2,511,907	+		Sama_2073	0.29	-1.7
2,511,907	+		Sama_2073	0.29	-0.2
2,511,928	+		Sama_2073	0.31	-0.3
2,511,929	-		Sama_2073	0.31	-0.4
2,512,002	+		Sama_2073	0.40	-1.1
2,512,050	+		Sama_2073	0.46	-2.4
2,512,085	+		Sama_2073	0.51	-1.4
2,512,111	-		Sama_2073	0.54	-1.6
2,512,125	-		Sama_2073	0.56	-1.3
2,512,156	+		Sama_2073	0.59	-1.2
2,512,156	+		Sama_2073	0.59	+0.5
2,512,192	+		Sama_2073	0.64	-0.9
2,512,193	-		Sama_2073	0.64	-1.2
2,512,200	+		Sama_2073	0.65	-1.4
2,512,223	+		Sama_2073	0.68	-1.1
2,512,223	+		Sama_2073	0.68	-0.5
2,512,223	+		Sama_2073	0.68	-1.1
2,512,224	-		Sama_2073	0.68	+0.2
2,512,224	-		Sama_2073	0.68	-0.1
2,512,224	-		Sama_2073	0.68	+0.1
2,512,287	-		Sama_2073	0.76	-0.9
2,512,330	+		Sama_2073	0.81	-0.1
2,512,362	-		Sama_2073	0.85	-0.1
2,512,362	-		Sama_2073	0.85	-1.5
2,512,402	+		Sama_2073	0.90	+0.0
2,512,402	+		Sama_2073	0.90	-1.1
2,512,402	+		Sama_2073	0.90	-1.5
2,512,402	+		Sama_2073	0.90	+0.2
2,512,402	+		Sama_2073	0.90	-0.0
2,512,402	+		Sama_2073	0.90	-1.5
2,512,402	+		Sama_2073	0.90	-1.4
2,512,402	+		Sama_2073	0.90	-0.3
2,512,402	+		Sama_2073	0.90	-0.8
2,512,402	+		Sama_2073	0.90	-0.9
2,512,402	+		Sama_2073	0.90	-1.9
2,512,403	-		Sama_2073	0.90	+1.3
2,512,403	-		Sama_2073	0.90	+0.5
2,512,404	+				-0.7
2,512,404	+				+0.3
2,512,404	+				-0.2
2,512,404	+				-1.2
2,512,404	+				+0.2
2,512,405	-				-1.7
2,512,405	-				-2.1
2,512,405	-				-1.0
2,512,406	+				-2.2
2,512,406	+				-1.7
2,512,406	+				-1.7
2,512,406	+				+1.9
2,512,407	-				-0.1
2,512,464	+				+1.3
2,512,464	+				-2.2
2,512,465	-				-0.7
2,512,483	+				+0.4
2,512,512	+				+2.2
2,512,517	+				+0.3
2,512,518	-				+0.4
2,512,546	+				+0.9