Strain Fitness in Shewanella amazonensis SB2B around Sama_2029

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
2,466,837	+				-1.1
2,466,837	+				+0.5
2,466,838	-				-0.6
2,466,838	-				+0.3
2,466,885	-				+0.9
2,466,885	-				-1.4
2,466,887	+				+1.5
2,466,887	+				+0.4
2,466,888	-				-2.4
2,466,999	-		Sama_2028	0.16	-0.8
2,467,037	+		Sama_2028	0.20	-1.7
2,467,038	-		Sama_2028	0.20	-1.9
2,467,038	-		Sama_2028	0.20	+0.5
2,467,081	-		Sama_2028	0.25	-0.9
2,467,084	+		Sama_2028	0.25	-0.3
2,467,084	+		Sama_2028	0.25	+1.1
2,467,084	+		Sama_2028	0.25	+1.3
2,467,084	+		Sama_2028	0.25	+0.0
2,467,084	+		Sama_2028	0.25	-1.1
2,467,085	-		Sama_2028	0.25	-0.4
2,467,103	-		Sama_2028	0.27	+0.8
2,467,103	-		Sama_2028	0.27	-0.1
2,467,240	-		Sama_2028	0.43	+0.9
2,467,319	-		Sama_2028	0.52	+0.5
2,467,319	-		Sama_2028	0.52	+1.7
2,467,326	+		Sama_2028	0.53	+1.2
2,467,326	+		Sama_2028	0.53	-0.3
2,467,326	+		Sama_2028	0.53	-0.3
2,467,327	-		Sama_2028	0.53	-1.3
2,467,327	-		Sama_2028	0.53	-0.4
2,467,327	-		Sama_2028	0.53	+0.7
2,467,327	-		Sama_2028	0.53	+1.1
2,467,327	-		Sama_2028	0.53	-1.7
2,467,327	-		Sama_2028	0.53	-0.1
2,467,327	-		Sama_2028	0.53	-0.6
2,467,327	-		Sama_2028	0.53	+0.7
2,467,357	+		Sama_2028	0.57	-2.9
2,467,358	-		Sama_2028	0.57	+0.5
2,467,400	-		Sama_2028	0.62	+0.5
2,467,517	-		Sama_2028	0.75	+1.7
2,467,517	-		Sama_2028	0.75	+1.9
2,467,517	-		Sama_2028	0.75	-1.7
2,467,536	+		Sama_2028	0.77	-0.4
2,467,565	-		Sama_2028	0.80	+0.7
2,467,568	-		Sama_2028	0.81	-2.1
2,467,588	-		Sama_2028	0.83	+0.2
2,467,607	-		Sama_2028	0.85	+0.9
2,467,640	-		Sama_2028	0.89	+0.7
2,467,640	-		Sama_2028	0.89	+0.5
2,467,685	+				-0.5
2,467,747	+				+0.7
2,467,747	+				-0.5
2,467,750	+				+0.3
2,467,750	+				-0.2
2,467,751	-				-0.1
2,467,751	-				-0.8
2,467,751	-				-0.1
2,467,770	-				+1.1
2,467,784	+				-1.1
2,467,785	-				+0.2
2,467,808	+				+1.2
2,467,808	+				+0.0
2,467,809	-				-0.5
2,468,080	+		Sama_2029	0.24	+1.9
2,468,080	+		Sama_2029	0.24	+0.3
2,468,081	-		Sama_2029	0.24	+1.0
2,468,125	+		Sama_2029	0.27	+0.9
2,468,147	+		Sama_2029	0.29	+1.5
2,468,148	-		Sama_2029	0.29	-2.5
2,468,148	-		Sama_2029	0.29	+1.1
2,468,164	+		Sama_2029	0.31	+0.5
2,468,208	+		Sama_2029	0.34	+0.3
2,468,209	-		Sama_2029	0.34	-0.1
2,468,209	-		Sama_2029	0.34	-1.7
2,468,223	+		Sama_2029	0.36	+1.3
2,468,249	+		Sama_2029	0.38	+0.7
2,468,275	+		Sama_2029	0.40	+0.3
2,468,281	+		Sama_2029	0.40	+1.3
2,468,281	+		Sama_2029	0.40	+1.7
2,468,281	+		Sama_2029	0.40	-2.1
2,468,282	-		Sama_2029	0.40	+1.9
2,468,343	+		Sama_2029	0.46	-0.1
2,468,344	-		Sama_2029	0.46	+1.5
2,468,364	+		Sama_2029	0.47	+0.9
2,468,364	+		Sama_2029	0.47	+0.4
2,468,364	+		Sama_2029	0.47	+0.9
2,468,379	-		Sama_2029	0.49	+1.4
2,468,425	+		Sama_2029	0.52	-0.5
2,468,426	-		Sama_2029	0.52	+0.8
2,468,426	-		Sama_2029	0.52	+0.9
2,468,434	+		Sama_2029	0.53	+1.0
2,468,434	+		Sama_2029	0.53	+2.5
2,468,434	+		Sama_2029	0.53	+0.8
2,468,435	-		Sama_2029	0.53	+0.9
2,468,435	-		Sama_2029	0.53	-0.7
2,468,447	+		Sama_2029	0.54	+2.0
2,468,613	-		Sama_2029	0.68	+0.8
2,468,613	-		Sama_2029	0.68	+0.2
2,468,613	-		Sama_2029	0.68	+0.6
2,468,620	+		Sama_2029	0.68	-0.5
2,468,662	+		Sama_2029	0.72	+1.1
2,468,662	+		Sama_2029	0.72	-1.2
2,468,663	-		Sama_2029	0.72	+0.6
2,468,673	+		Sama_2029	0.73	-2.1
2,468,673	+		Sama_2029	0.73	+1.8
2,468,674	-		Sama_2029	0.73	+2.9
2,468,674	-		Sama_2029	0.73	-0.1
2,468,680	+		Sama_2029	0.73	+0.3
2,468,680	+		Sama_2029	0.73	+1.6
2,468,700	-		Sama_2029	0.75	-0.9
2,468,766	-		Sama_2029	0.81	+0.6
2,468,773	+		Sama_2029	0.81	+0.9
2,468,773	+		Sama_2029	0.81	+1.5
2,468,773	+		Sama_2029	0.81	-0.8
2,468,774	-		Sama_2029	0.81	+0.8
2,468,774	-		Sama_2029	0.81	+0.9
2,468,820	+		Sama_2029	0.85	+1.5
2,468,832	+		Sama_2029	0.86	-1.1
2,468,992	+				+0.5
2,468,992	+				+0.7
2,469,014	+				-0.6
2,469,028	+				+0.8
2,469,107	-				+0.3
2,469,178	+				+0.3
2,469,179	-				+1.4
2,469,180	+				-0.9
2,469,180	+				+0.2
2,469,180	+				-0.2
2,469,180	+				-0.7
2,469,181	-				-0.1
2,469,181	-				+1.8
2,469,196	+				+1.4
2,469,196	+				+0.3
2,469,196	+				+1.9
2,469,196	+				-1.1
2,469,196	+				-1.4
2,469,197	-				-1.7
2,469,197	-				-1.7
2,469,197	-				+0.3
2,469,197	-				-1.2
2,469,213	+				+1.1
2,469,214	-				+0.7
2,469,214	-				+0.2
2,469,214	-				+1.2
2,469,331	+		Sama_2030	0.33	+0.8
2,469,332	-		Sama_2030	0.33	+1.2
2,469,410	-		Sama_2030	0.54	-0.4
2,469,448	+		Sama_2030	0.65	+1.8
2,469,479	+		Sama_2030	0.74	+1.7
2,469,479	+		Sama_2030	0.74	+0.2
2,469,516	+		Sama_2030	0.84	+0.4
2,469,516	+		Sama_2030	0.84	+3.0
2,469,516	+		Sama_2030	0.84	-0.6
2,469,517	-		Sama_2030	0.84	+0.2
2,469,517	-		Sama_2030	0.84	+0.6
2,469,517	-		Sama_2030	0.84	+0.3
2,469,517	-		Sama_2030	0.84	+0.2
2,469,608	+				+0.5
2,469,657	-		Sama_2031	0.14	+1.5
2,469,747	+		Sama_2031	0.28	+1.4
2,469,748	-		Sama_2031	0.28	-0.1
2,469,753	+		Sama_2031	0.29	+2.0
2,469,762	+		Sama_2031	0.30	-1.1
2,469,762	+		Sama_2031	0.30	-1.5
2,469,762	+		Sama_2031	0.30	+0.2
2,469,763	-		Sama_2031	0.30	-1.2
2,469,766	+		Sama_2031	0.31	+1.0
2,469,767	-		Sama_2031	0.31	+0.0
2,469,767	-		Sama_2031	0.31	-0.6
2,469,767	-		Sama_2031	0.31	+1.2
2,469,782	+		Sama_2031	0.33	-0.8
2,469,783	-		Sama_2031	0.33	-1.1
2,469,815	+		Sama_2031	0.38	+1.9
2,469,816	-		Sama_2031	0.38	-0.2
2,469,897	+		Sama_2031	0.51	+0.8
2,469,897	+		Sama_2031	0.51	+1.6
2,469,898	-		Sama_2031	0.51	+0.2
2,469,918	-		Sama_2031	0.54	-1.7
2,469,921	-		Sama_2031	0.55	-0.5
2,469,921	-		Sama_2031	0.55	+1.2