Strain Fitness in Shewanella amazonensis SB2B around Sama_1365

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
1,655,607	+		Sama_1364	0.73	+0.4
1,655,607	+		Sama_1364	0.73	+1.0
1,655,608	-		Sama_1364	0.73	+1.4
1,655,608	-		Sama_1364	0.73	+1.2
1,655,619	+		Sama_1364	0.74	+0.0
1,655,619	+		Sama_1364	0.74	+1.1
1,655,619	+		Sama_1364	0.74	+3.7
1,655,619	+		Sama_1364	0.74	+0.9
1,655,620	-		Sama_1364	0.74	+1.0
1,655,620	-		Sama_1364	0.74	+1.4
1,655,620	-		Sama_1364	0.74	+0.9
1,655,631	+		Sama_1364	0.75	+0.1
1,655,631	+		Sama_1364	0.75	-0.9
1,655,643	+		Sama_1364	0.75	-0.4
1,655,643	+		Sama_1364	0.75	+0.4
1,655,644	-		Sama_1364	0.75	-0.6
1,655,664	+		Sama_1364	0.76	+0.4
1,655,664	+		Sama_1364	0.76	-1.1
1,655,664	+		Sama_1364	0.76	-1.8
1,655,664	+		Sama_1364	0.76	+0.4
1,655,665	-		Sama_1364	0.76	-0.3
1,655,665	-		Sama_1364	0.76	+2.1
1,655,683	-		Sama_1364	0.77	+0.1
1,655,688	+		Sama_1364	0.78	+0.3
1,655,688	+		Sama_1364	0.78	+0.7
1,655,688	+		Sama_1364	0.78	-1.0
1,655,688	+		Sama_1364	0.78	-0.5
1,655,689	-		Sama_1364	0.78	-1.7
1,655,689	-		Sama_1364	0.78	+1.2
1,655,717	+		Sama_1364	0.79	-0.3
1,655,722	+		Sama_1364	0.79	+0.8
1,655,722	+		Sama_1364	0.79	-0.1
1,655,722	+		Sama_1364	0.79	+1.2
1,655,722	+		Sama_1364	0.79	-0.1
1,655,863	+		Sama_1364	0.87	+0.7
1,655,984	+				+0.6
1,655,985	-				-1.5
1,656,030	+				+1.0
1,656,030	+				-0.7
1,656,031	-				-0.2
1,656,031	-				-1.1
1,656,031	-				+1.2
1,656,031	-				+2.0
1,656,031	-				-1.7
1,656,037	+				+2.3
1,656,037	+				+0.3
1,656,037	+				-1.1
1,656,037	+				-2.1
1,656,038	-				+0.5
1,656,130	+				-1.1
1,656,130	+				-2.1
1,656,131	-				+0.2
1,656,174	+				-0.9
1,656,174	+				-1.2
1,656,175	-				+0.3
1,656,187	+				+1.3
1,656,188	-				+1.1
1,656,200	-				+0.9
1,656,220	-				-2.1
1,656,220	-				+2.4
1,656,229	+				+1.0
1,656,229	+				+0.9
1,656,230	-				+0.0
1,656,235	-				+0.8
1,656,258	-				+0.6
1,656,324	+				-0.1
1,656,325	-				+0.0
1,656,325	-				-1.1
1,656,395	+				+0.2
1,656,589	-		Sama_1365	0.18	+1.4
1,656,610	+		Sama_1365	0.20	+0.6
1,656,611	-		Sama_1365	0.20	-2.0
1,656,623	-		Sama_1365	0.21	+2.4
1,656,673	+		Sama_1365	0.24	+1.8
1,656,678	+		Sama_1365	0.24	+0.0
1,656,744	+		Sama_1365	0.29	-1.5
1,656,914	+		Sama_1365	0.40	+1.1
1,656,914	+		Sama_1365	0.40	+1.7
1,656,914	+		Sama_1365	0.40	-1.5
1,656,914	+		Sama_1365	0.40	+1.4
1,656,914	+		Sama_1365	0.40	+0.9
1,656,914	+		Sama_1365	0.40	-0.3
1,656,914	+		Sama_1365	0.40	+1.8
1,656,914	+		Sama_1365	0.40	+1.4
1,656,914	+		Sama_1365	0.40	-0.7
1,656,915	-		Sama_1365	0.40	-1.2
1,656,915	-		Sama_1365	0.40	-0.1
1,656,915	-		Sama_1365	0.40	+1.5
1,656,915	-		Sama_1365	0.40	+1.3
1,656,915	-		Sama_1365	0.40	+0.9
1,656,915	-		Sama_1365	0.40	-2.1
1,656,915	-		Sama_1365	0.40	+2.0
1,656,918	+		Sama_1365	0.40	-1.1
1,656,918	+		Sama_1365	0.40	+0.7
1,656,918	+		Sama_1365	0.40	+0.1
1,656,918	+		Sama_1365	0.40	+0.8
1,656,918	+		Sama_1365	0.40	-1.5
1,656,918	+		Sama_1365	0.40	-1.3
1,656,919	-		Sama_1365	0.40	+1.5
1,656,919	-		Sama_1365	0.40	+0.8
1,656,941	+		Sama_1365	0.41	+1.4
1,656,941	+		Sama_1365	0.41	+0.2
1,656,942	-		Sama_1365	0.41	+1.4
1,656,942	-		Sama_1365	0.41	-0.6
1,656,942	-		Sama_1365	0.41	+0.0
1,657,001	+		Sama_1365	0.45	+0.3
1,657,088	+		Sama_1365	0.51	+1.0
1,657,088	+		Sama_1365	0.51	-2.3
1,657,088	+		Sama_1365	0.51	-2.5
1,657,099	+		Sama_1365	0.52	-2.1
1,657,099	+		Sama_1365	0.52	-0.7
1,657,099	+		Sama_1365	0.52	-0.5
1,657,099	+		Sama_1365	0.52	-2.7
1,657,099	+		Sama_1365	0.52	+0.4
1,657,099	+		Sama_1365	0.52	+1.2
1,657,099	+		Sama_1365	0.52	-1.2
1,657,100	-		Sama_1365	0.52	+0.3
1,657,102	-		Sama_1365	0.52	+1.9
1,657,291	+		Sama_1365	0.64	-0.6
1,657,322	-		Sama_1365	0.66	-0.7
1,657,338	+		Sama_1365	0.67	+1.0
1,657,338	+		Sama_1365	0.67	-0.3
1,657,339	-		Sama_1365	0.67	-1.1
1,657,339	-		Sama_1365	0.67	-0.0
1,657,339	-		Sama_1365	0.67	+0.2
1,657,400	+		Sama_1365	0.71	-3.1
1,657,401	-		Sama_1365	0.71	-0.7
1,657,495	+		Sama_1365	0.77	+0.9
1,657,495	+		Sama_1365	0.77	-1.0
1,657,525	+		Sama_1365	0.79	+1.1
1,657,525	+		Sama_1365	0.79	-1.2
1,657,663	+		Sama_1365	0.88	-1.6
1,657,663	+		Sama_1365	0.88	-0.7
1,657,663	+		Sama_1365	0.88	+1.0
1,657,663	+		Sama_1365	0.88	-1.0
1,657,663	+		Sama_1365	0.88	+0.4
1,657,664	-		Sama_1365	0.88	+1.1
1,657,664	-		Sama_1365	0.88	+0.5
1,657,664	-		Sama_1365	0.88	+0.9
1,657,664	-		Sama_1365	0.88	-2.1
1,657,667	-		Sama_1365	0.89	+0.5
1,657,682	+		Sama_1365	0.90	-0.1
1,657,682	+		Sama_1365	0.90	+0.1
1,657,682	+		Sama_1365	0.90	+0.9
1,657,685	+		Sama_1365	0.90	+0.3
1,657,685	+		Sama_1365	0.90	-2.3
1,657,685	+		Sama_1365	0.90	+3.2
1,657,686	-		Sama_1365	0.90	-0.3
1,657,742	+				+0.6
1,657,742	+				-0.7
1,657,768	+				-0.7
1,657,793	+				-1.6
1,657,794	-				+0.9
1,657,845	+				-0.4
1,657,845	+				-0.6
1,657,845	+				-0.6
1,657,845	+				-1.3
1,657,845	+				-1.1
1,657,845	+				-0.1
1,657,845	+				+0.7
1,657,846	-				+0.3
1,657,848	+				-1.3
1,657,864	+				-1.5
1,657,864	+				+0.2
1,657,864	+				+0.6
1,657,864	+				+1.5
1,657,877	+				-0.1
1,657,877	+				+0.4
1,657,934	-				+0.2
1,657,934	-				+0.6
1,657,938	-				+1.1
1,657,965	+				-0.1
1,657,966	-				+0.9
1,657,969	+				-1.1
1,657,970	-				+0.3
1,657,977	+				-1.1
1,657,977	+				+1.0
1,657,977	+				-0.4
1,658,007	+				-0.5
1,658,008	-				-2.5
1,658,030	-				+3.3
1,658,030	-				+1.0
1,658,170	+		Sama_1366	0.19	+2.6
1,658,171	-		Sama_1366	0.19	+0.4
1,658,171	-		Sama_1366	0.19	-0.3
1,658,213	+		Sama_1366	0.23	+0.7
1,658,213	+		Sama_1366	0.23	+1.9
1,658,213	+		Sama_1366	0.23	-1.1
1,658,213	+		Sama_1366	0.23	+2.6
1,658,214	-		Sama_1366	0.23	+2.2
1,658,214	-		Sama_1366	0.23	-0.0
1,658,229	-		Sama_1366	0.25	+0.4
1,658,400	-		Sama_1366	0.42	+0.9
1,658,400	-		Sama_1366	0.42	+0.3
1,658,493	-		Sama_1366	0.52	+1.2
1,658,561	+		Sama_1366	0.59	-2.8
1,658,562	-		Sama_1366	0.59	-1.3
1,658,562	-		Sama_1366	0.59	+0.5
1,658,596	+		Sama_1366	0.63	-0.4
1,658,596	+		Sama_1366	0.63	+0.3
1,658,597	-		Sama_1366	0.63	-0.7
1,658,597	-		Sama_1366	0.63	+0.9
1,658,674	-		Sama_1366	0.71	+0.6
1,658,699	+		Sama_1366	0.73	+0.9
1,658,699	+		Sama_1366	0.73	+1.3
1,658,700	-		Sama_1366	0.73	+1.4
1,658,763	+		Sama_1366	0.80	+1.7
1,658,763	+		Sama_1366	0.80	+0.1
1,658,763	+		Sama_1366	0.80	-0.3
1,658,763	+		Sama_1366	0.80	-0.1
1,658,763	+		Sama_1366	0.80	-0.5
1,658,764	-		Sama_1366	0.80	+2.3
1,658,766	+		Sama_1366	0.80	+2.2
1,658,767	-		Sama_1366	0.80	-2.0
1,658,767	-		Sama_1366	0.80	-0.7
1,658,767	-		Sama_1366	0.80	-0.4
1,658,767	-		Sama_1366	0.80	+0.3
1,658,767	-		Sama_1366	0.80	+0.2
1,658,767	-		Sama_1366	0.80	+0.0