Strain Fitness in Shewanella amazonensis SB2B around Sama_1285

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
1,572,661	+		Sama_1282	0.83	+3.0
1,572,661	+		Sama_1282	0.83	+0.2
1,572,661	+		Sama_1282	0.83	+3.9
1,572,661	+		Sama_1282	0.83	+2.2
1,572,661	+		Sama_1282	0.83	+4.3
1,572,661	+		Sama_1282	0.83	+4.1
1,572,661	+		Sama_1282	0.83	-1.9
1,572,661	+		Sama_1282	0.83	-0.8
1,572,662	-		Sama_1282	0.83	-2.1
1,572,662	-		Sama_1282	0.83	+1.9
1,572,662	-		Sama_1282	0.83	+2.1
1,572,662	-		Sama_1282	0.83	+1.7
1,572,662	-		Sama_1282	0.83	+1.7
1,572,663	+		Sama_1282	0.83	+3.7
1,572,663	+		Sama_1282	0.83	+4.4
1,572,663	+		Sama_1282	0.83	+3.9
1,572,663	+		Sama_1282	0.83	-1.7
1,572,663	+		Sama_1282	0.83	+3.3
1,572,664	-		Sama_1282	0.83	-3.1
1,572,664	-		Sama_1282	0.83	+1.3
1,572,664	-		Sama_1282	0.83	+2.5
1,572,664	-		Sama_1282	0.83	+2.9
1,572,664	-		Sama_1282	0.83	+0.0
1,572,732	-		Sama_1282	0.87	+1.5
1,572,786	+				+4.3
1,572,797	-				+0.9
1,572,817	+				+3.8
1,572,817	+				+3.9
1,572,822	+				-0.8
1,572,822	+				+3.7
1,572,822	+				+4.0
1,572,822	+				+0.9
1,572,822	+				-1.4
1,572,822	+				+2.3
1,572,822	+				+2.4
1,572,822	+				+2.9
1,572,822	+				+2.6
1,572,822	+				+1.9
1,572,822	+				+3.0
1,572,823	-				-0.4
1,572,823	-				+0.1
1,572,823	-				+0.9
1,572,823	-				-0.7
1,572,823	-				-1.9
1,572,823	-				+2.3
1,572,912	+				+2.4
1,572,912	+				+2.9
1,572,912	+				+2.9
1,572,913	-				+2.3
1,572,973	+				+2.8
1,572,976	+				-0.4
1,572,977	-				+0.1
1,573,024	+				+2.8
1,573,025	-				-0.7
1,573,025	-				-2.9
1,573,025	-				-1.9
1,573,058	+				-2.7
1,573,058	+				+0.5
1,573,058	+				+3.4
1,573,058	+				-0.5
1,573,058	+				-0.5
1,573,059	-				-1.3
1,573,059	-				-2.0
1,573,059	-				-1.3
1,573,059	-				+1.0
1,573,124	+		Sama_1283	0.18	+1.0
1,573,125	-		Sama_1283	0.18	+0.0
1,573,223	+		Sama_1283	0.58	+1.1
1,573,238	+		Sama_1283	0.65	+0.5
1,573,238	+		Sama_1283	0.65	-1.0
1,573,239	-		Sama_1283	0.65	+0.1
1,573,239	-		Sama_1283	0.65	+0.8
1,573,242	-		Sama_1283	0.66	-2.7
1,573,321	+				+2.0
1,573,321	+				+0.8
1,573,321	+				-2.4
1,573,321	+				-0.7
1,573,321	+				-1.9
1,573,322	-				+2.1
1,573,322	-				-1.1
1,573,322	-				+0.2
1,573,322	-				-0.1
1,573,322	-				+1.7
1,573,385	-		Sama_1284	0.19	+1.2
1,573,398	-		Sama_1284	0.22	-0.5
1,573,455	-		Sama_1284	0.39	-0.7
1,573,475	+		Sama_1284	0.45	-1.1
1,573,476	-		Sama_1284	0.45	+1.1
1,573,493	-		Sama_1284	0.50	+0.3
1,573,512	-		Sama_1284	0.55	+0.0
1,573,563	-		Sama_1284	0.70	+0.4
1,573,563	-		Sama_1284	0.70	-1.1
1,573,563	-		Sama_1284	0.70	-0.3
1,573,579	+		Sama_1284	0.74	-0.9
1,573,580	-		Sama_1284	0.75	-2.1
1,573,580	-		Sama_1284	0.75	+0.9
1,573,643	+				-0.3
1,573,643	+				+1.1
1,573,651	-				-1.4
1,573,651	-				+1.5
1,573,660	-				+0.2
1,573,784	+		Sama_1285	0.19	-0.1
1,573,784	+		Sama_1285	0.19	-1.1
1,573,784	+		Sama_1285	0.19	-1.1
1,573,785	-		Sama_1285	0.20	+1.0
1,573,785	-		Sama_1285	0.20	+0.9
1,573,836	+		Sama_1285	0.27	-1.9
1,573,836	+		Sama_1285	0.27	-0.9
1,573,836	+		Sama_1285	0.27	-1.1
1,573,836	+		Sama_1285	0.27	-1.1
1,573,837	-		Sama_1285	0.27	+3.1
1,573,837	-		Sama_1285	0.27	+0.7
1,573,837	-		Sama_1285	0.27	-2.9
1,573,935	+		Sama_1285	0.42	-0.4
1,573,935	+		Sama_1285	0.42	-0.1
1,573,935	+		Sama_1285	0.42	-0.8
1,573,936	-		Sama_1285	0.42	+2.8
1,573,942	-		Sama_1285	0.43	+0.3
1,573,942	-		Sama_1285	0.43	-0.1
1,574,012	+		Sama_1285	0.54	+1.1
1,574,012	+		Sama_1285	0.54	+0.9
1,574,012	+		Sama_1285	0.54	+0.5
1,574,013	-		Sama_1285	0.54	+1.5
1,574,013	-		Sama_1285	0.54	-0.8
1,574,127	-		Sama_1285	0.71	-1.5
1,574,127	-		Sama_1285	0.71	+1.1
1,574,250	+		Sama_1285	0.89	+0.8
1,574,251	-		Sama_1285	0.89	+0.3
1,574,251	-		Sama_1285	0.89	-0.2
1,574,262	+				-2.8
1,574,322	+				+0.3
1,574,363	-				+0.1
1,574,363	-				+0.9
1,574,363	-				+0.2
1,574,400	-				-0.2
1,574,413	-				-0.5
1,574,418	+				-0.9
1,574,419	-				-0.5
1,574,423	+				-1.7
1,574,424	-				+0.3
1,574,436	+		Sama_1286	0.13	-1.9
1,574,436	+		Sama_1286	0.13	-0.1
1,574,437	-		Sama_1286	0.13	-0.5
1,574,472	+		Sama_1286	0.24	+0.3
1,574,496	+		Sama_1286	0.32	-0.3
1,574,496	+		Sama_1286	0.32	+0.1
1,574,497	-		Sama_1286	0.33	+0.4
1,574,552	-		Sama_1286	0.51	-2.0
1,574,552	-		Sama_1286	0.51	+0.5
1,574,575	-		Sama_1286	0.58	-2.2
1,574,645	-		Sama_1286	0.82	+2.2
1,574,645	-		Sama_1286	0.82	-0.7
1,574,645	-		Sama_1286	0.82	+0.7
1,574,724	+				+0.0
1,574,724	+				+1.2
1,574,724	+				+0.7
1,574,725	-				-0.5
1,574,746	+				+1.5
1,574,747	-				-0.2
1,574,757	-				+0.1
1,574,761	-				-1.2
1,574,766	+				+0.8
1,574,893	+		Sama_1287	0.15	+1.4
1,574,893	+		Sama_1287	0.15	+0.7
1,574,894	-		Sama_1287	0.15	-2.5
1,574,894	-		Sama_1287	0.15	-1.5
1,574,929	+		Sama_1287	0.24	-2.2
1,574,929	+		Sama_1287	0.24	+1.9
1,574,929	+		Sama_1287	0.24	+0.4
1,574,930	-		Sama_1287	0.24	+0.4
1,574,930	-		Sama_1287	0.24	+1.7
1,574,930	-		Sama_1287	0.24	-0.5
1,574,940	+		Sama_1287	0.26	-0.3
1,574,965	-		Sama_1287	0.33	-0.7
1,574,965	-		Sama_1287	0.33	-0.1
1,574,979	-		Sama_1287	0.36	-0.0
1,575,005	+		Sama_1287	0.42	-1.7
1,575,005	+		Sama_1287	0.42	+0.2
1,575,005	+		Sama_1287	0.42	+0.9
1,575,005	+		Sama_1287	0.42	-1.5
1,575,005	+		Sama_1287	0.42	-2.4
1,575,006	-		Sama_1287	0.43	+0.5
1,575,006	-		Sama_1287	0.43	+0.6
1,575,006	-		Sama_1287	0.43	-0.2
1,575,030	+		Sama_1287	0.49	+0.2
1,575,045	-		Sama_1287	0.52	+0.9
1,575,074	+		Sama_1287	0.60	-0.4
1,575,074	+		Sama_1287	0.60	+0.6
1,575,075	-		Sama_1287	0.60	-0.6
1,575,075	-		Sama_1287	0.60	+0.5
1,575,075	-		Sama_1287	0.60	-0.2
1,575,107	-		Sama_1287	0.68	-1.7
1,575,218	+				-0.4
1,575,218	+				+0.6
1,575,219	-				-0.1
1,575,219	-				-0.6
1,575,222	+				-0.4
1,575,222	+				+1.1
1,575,222	+				+0.3
1,575,222	+				-2.2
1,575,223	-				+1.3
1,575,241	+				+0.3
1,575,242	-				+0.4
1,575,242	-				-0.1
1,575,242	-				-1.2
1,575,242	-				+0.5
1,575,249	+				-1.4
1,575,250	-				+0.7
1,575,259	+				-1.7
1,575,260	-				+1.4
1,575,260	-				-1.9
1,575,267	+				-0.7
1,575,267	+				+1.9
1,575,267	+				-0.3
1,575,268	-				+0.1
1,575,268	-				+0.6
1,575,270	+				-0.1
1,575,270	+				-1.3
1,575,271	-				-1.2
1,575,271	-				-1.0
1,575,271	-				+0.2