Strain Fitness in Shewanella amazonensis SB2B around Sama_1057

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
1,277,512	+		Sama_1055	0.83	-1.5
1,277,513	-		Sama_1055	0.83	+0.6
1,277,513	-		Sama_1055	0.83	+0.4
1,277,542	+		Sama_1055	0.85	-0.9
1,277,543	-		Sama_1055	0.85	+1.3
1,277,543	-		Sama_1055	0.85	+1.8
1,277,599	+		Sama_1055	0.90	-1.4
1,277,600	-		Sama_1055	0.90	-0.1
1,277,600	-		Sama_1055	0.90	-0.0
1,277,660	+				-1.2
1,277,770	+				-0.5
1,277,857	+				+0.5
1,277,857	+				-2.3
1,277,857	+				-0.0
1,277,857	+				-2.7
1,277,857	+				-1.5
1,277,857	+				+0.6
1,277,857	+				-1.0
1,277,857	+				+0.5
1,277,858	-				-0.1
1,277,858	-				-0.4
1,277,858	-				-1.5
1,277,858	-				-1.3
1,277,858	-				+0.3
1,277,858	-				-3.2
1,277,858	-				+0.9
1,277,858	-				+1.1
1,277,858	-				-0.2
1,277,858	-				-1.6
1,277,858	-				+1.0
1,277,858	-				+0.0
1,277,860	-				-1.9
1,277,860	-				-2.5
1,277,860	-				+0.1
1,277,895	-				+0.7
1,277,896	+				-2.1
1,277,902	-				-0.6
1,277,916	-				+2.8
1,277,939	+				+1.2
1,277,943	+				-0.2
1,277,944	-				-0.2
1,277,944	-				+0.0
1,277,949	+				-1.2
1,277,949	+				-0.3
1,278,048	-		Sama_1056	0.17	+0.7
1,278,121	-		Sama_1056	0.35	-0.9
1,278,121	-		Sama_1056	0.35	-0.2
1,278,121	-		Sama_1056	0.35	-0.1
1,278,229	+		Sama_1056	0.60	-0.9
1,278,229	+		Sama_1056	0.60	-0.6
1,278,230	-		Sama_1056	0.61	+0.9
1,278,230	-		Sama_1056	0.61	+2.6
1,278,230	-		Sama_1056	0.61	-1.3
1,278,324	+		Sama_1056	0.83	+0.2
1,278,324	+		Sama_1056	0.83	-3.2
1,278,325	-		Sama_1056	0.83	-0.6
1,278,325	-		Sama_1056	0.83	-1.8
1,278,358	+				+2.4
1,278,371	+				+0.4
1,278,371	+				-1.0
1,278,371	+				+0.4
1,278,371	+				+2.1
1,278,404	+				+0.4
1,278,404	+				-0.7
1,278,404	+				-0.9
1,278,405	-				-0.5
1,278,439	+				-1.0
1,278,440	-				+0.1
1,278,452	+				+0.9
1,278,452	+				+1.1
1,278,466	+				+0.6
1,278,473	+				+0.1
1,278,477	+				+0.2
1,278,477	+				-2.4
1,278,477	+				-0.8
1,278,478	-				-0.1
1,278,478	-				-3.0
1,278,481	+				+0.2
1,278,481	+				+1.2
1,278,482	-				+0.8
1,278,482	-				+0.1
1,278,482	-				-1.7
1,278,487	+				+1.1
1,278,487	+				+0.8
1,278,487	+				+0.6
1,278,488	-				-2.6
1,278,499	+				+1.0
1,278,499	+				+0.4
1,278,500	-				+1.6
1,278,504	-				-0.1
1,278,504	-				-2.7
1,278,639	+				-1.0
1,278,640	-				+3.2
1,278,646	+				-0.7
1,278,646	+				-1.5
1,278,646	+				-1.1
1,278,646	+				+0.1
1,278,646	+				-0.9
1,278,647	-				+0.7
1,278,647	-				+1.1
1,278,684	-				-1.4
1,278,684	-				+0.2
1,278,684	-				-1.7
1,278,731	-				+0.2
1,278,731	-				+1.6
1,278,731	-				-0.1
1,278,792	+		Sama_1057	0.10	+0.5
1,278,792	+		Sama_1057	0.10	+0.2
1,278,792	+		Sama_1057	0.10	-2.1
1,278,792	+		Sama_1057	0.10	+1.7
1,278,792	+		Sama_1057	0.10	+1.7
1,278,792	+		Sama_1057	0.10	+0.1
1,278,792	+		Sama_1057	0.10	+0.5
1,278,792	+		Sama_1057	0.10	-2.7
1,278,792	+		Sama_1057	0.10	-2.3
1,278,792	+		Sama_1057	0.10	+1.1
1,278,792	+		Sama_1057	0.10	-1.0
1,278,792	+		Sama_1057	0.10	-1.9
1,278,792	+		Sama_1057	0.10	+1.1
1,278,792	+		Sama_1057	0.10	-0.3
1,278,792	+		Sama_1057	0.10	+0.6
1,278,793	-		Sama_1057	0.10	+0.8
1,278,793	-		Sama_1057	0.10	-0.5
1,278,793	-		Sama_1057	0.10	-0.2
1,278,793	-		Sama_1057	0.10	+0.7
1,278,793	-		Sama_1057	0.10	-0.0
1,278,793	-		Sama_1057	0.10	-1.3
1,278,793	-		Sama_1057	0.10	-0.2
1,278,793	-		Sama_1057	0.10	+0.7
1,278,793	-		Sama_1057	0.10	-0.1
1,278,793	-		Sama_1057	0.10	+0.1
1,278,793	-		Sama_1057	0.10	+0.8
1,278,793	-		Sama_1057	0.10	+0.8
1,278,793	-		Sama_1057	0.10	+0.7
1,278,838	-		Sama_1057	0.12	+0.8
1,278,838	-		Sama_1057	0.12	-0.2
1,278,838	-		Sama_1057	0.12	+0.6
1,278,898	+		Sama_1057	0.14	-2.2
1,278,899	-		Sama_1057	0.14	+0.5
1,278,919	-		Sama_1057	0.15	+1.1
1,278,919	-		Sama_1057	0.15	-1.3
1,279,062	+		Sama_1057	0.20	+2.1
1,279,062	+		Sama_1057	0.20	-0.5
1,279,062	+		Sama_1057	0.20	-2.3
1,279,062	+		Sama_1057	0.20	-1.3
1,279,062	+		Sama_1057	0.20	+0.2
1,279,063	-		Sama_1057	0.20	+0.1
1,279,066	+		Sama_1057	0.20	+1.1
1,279,066	+		Sama_1057	0.20	-0.9
1,279,066	+		Sama_1057	0.20	+0.9
1,279,066	+		Sama_1057	0.20	+0.7
1,279,067	-		Sama_1057	0.20	+1.8
1,279,067	-		Sama_1057	0.20	-0.8
1,279,067	-		Sama_1057	0.20	-2.0
1,279,067	-		Sama_1057	0.20	+0.0
1,279,090	+		Sama_1057	0.21	+1.4
1,279,091	-		Sama_1057	0.21	-0.3
1,279,108	+		Sama_1057	0.21	-0.3
1,279,108	+		Sama_1057	0.21	+0.1
1,279,109	-		Sama_1057	0.21	+1.4
1,279,189	+		Sama_1057	0.24	-0.5
1,279,190	-		Sama_1057	0.24	-1.4
1,279,190	-		Sama_1057	0.24	+1.1
1,279,265	-		Sama_1057	0.27	-0.9
1,279,276	-		Sama_1057	0.27	+1.1
1,279,276	-		Sama_1057	0.27	+0.7
1,279,276	-		Sama_1057	0.27	+0.8
1,279,276	-		Sama_1057	0.27	+0.7
1,279,320	-		Sama_1057	0.29	+0.4
1,279,339	+		Sama_1057	0.29	+0.5
1,279,339	+		Sama_1057	0.29	-0.3
1,279,339	+		Sama_1057	0.29	+0.7
1,279,339	+		Sama_1057	0.29	-3.4
1,279,339	+		Sama_1057	0.29	+1.2
1,279,339	+		Sama_1057	0.29	+0.7
1,279,339	+		Sama_1057	0.29	+2.2
1,279,339	+		Sama_1057	0.29	+0.9
1,279,340	-		Sama_1057	0.29	+1.4
1,279,340	-		Sama_1057	0.29	+1.1
1,279,361	+		Sama_1057	0.30	+1.1
1,279,361	+		Sama_1057	0.30	-1.0
1,279,361	+		Sama_1057	0.30	-1.4
1,279,361	+		Sama_1057	0.30	+0.9
1,279,361	+		Sama_1057	0.30	-0.6
1,279,362	-		Sama_1057	0.30	-1.0
1,279,362	-		Sama_1057	0.30	-1.5
1,279,381	-		Sama_1057	0.31	-1.0
1,279,399	+		Sama_1057	0.32	+1.3
1,279,399	+		Sama_1057	0.32	+0.9
1,279,399	+		Sama_1057	0.32	+2.1
1,279,400	-		Sama_1057	0.32	+0.1
1,279,400	-		Sama_1057	0.32	+0.5
1,279,400	-		Sama_1057	0.32	+0.7
1,279,400	-		Sama_1057	0.32	-0.7
1,279,400	-		Sama_1057	0.32	+0.8
1,279,400	-		Sama_1057	0.32	-2.3
1,279,400	-		Sama_1057	0.32	+0.1
1,279,433	+		Sama_1057	0.33	+0.0
1,279,695	+		Sama_1057	0.42	+1.5
1,279,730	+		Sama_1057	0.43	+1.5
1,279,731	-		Sama_1057	0.43	+1.2
1,279,759	+		Sama_1057	0.44	+1.3
1,279,759	+		Sama_1057	0.44	+1.2
1,279,760	-		Sama_1057	0.44	+0.8
1,279,760	-		Sama_1057	0.44	-2.3
1,279,760	-		Sama_1057	0.44	-1.1
1,279,773	+		Sama_1057	0.45	+0.4
1,279,773	+		Sama_1057	0.45	-0.9
1,279,774	-		Sama_1057	0.45	-0.8
1,279,798	+		Sama_1057	0.46	+1.1
1,279,798	+		Sama_1057	0.46	+0.7
1,279,824	+		Sama_1057	0.46	+0.1
1,279,843	+		Sama_1057	0.47	+1.1
1,279,843	+		Sama_1057	0.47	-0.9
1,279,843	+		Sama_1057	0.47	-0.3
1,279,844	-		Sama_1057	0.47	-1.5
1,279,924	-		Sama_1057	0.50	-0.3
1,279,924	-		Sama_1057	0.50	+0.7
1,279,924	-		Sama_1057	0.50	+1.3
1,279,943	+		Sama_1057	0.51	+1.1
1,279,943	+		Sama_1057	0.51	-1.1
1,279,943	+		Sama_1057	0.51	+0.1
1,279,943	+		Sama_1057	0.51	+0.4
1,279,944	-		Sama_1057	0.51	-2.4
1,280,010	+		Sama_1057	0.53	+0.2
1,280,011	-		Sama_1057	0.53	+0.3
1,280,025	+		Sama_1057	0.54	-2.4
1,280,037	-		Sama_1057	0.54	-0.3
1,280,040	+		Sama_1057	0.54	-0.8
1,280,040	+		Sama_1057	0.54	+0.5
1,280,040	+		Sama_1057	0.54	+1.5
1,280,040	+		Sama_1057	0.54	+0.1
1,280,040	+		Sama_1057	0.54	+1.0
1,280,040	+		Sama_1057	0.54	-2.1
1,280,041	-		Sama_1057	0.54	-0.2
1,280,041	-		Sama_1057	0.54	-0.2
1,280,050	-		Sama_1057	0.54	+0.6
1,280,130	-		Sama_1057	0.57	+1.7
1,280,130	-		Sama_1057	0.57	-0.1
1,280,135	-		Sama_1057	0.57	-0.5
1,280,135	-		Sama_1057	0.57	-0.9
1,280,430	+		Sama_1057	0.68	-1.3
1,280,430	+		Sama_1057	0.68	-0.0
1,280,431	-		Sama_1057	0.68	+2.7
1,280,456	-		Sama_1057	0.69	-0.1
1,280,456	-		Sama_1057	0.69	+0.5
1,280,456	-		Sama_1057	0.69	-0.1
1,280,456	-		Sama_1057	0.69	-0.7
1,280,497	-		Sama_1057	0.70	-1.3
1,280,531	+		Sama_1057	0.71	-0.2
1,280,575	+		Sama_1057	0.73	+0.3
1,280,576	-		Sama_1057	0.73	-0.7
1,280,576	-		Sama_1057	0.73	+0.9
1,280,576	-		Sama_1057	0.73	+0.4
1,280,587	+		Sama_1057	0.73	-0.5
1,280,587	+		Sama_1057	0.73	-1.2
1,280,587	+		Sama_1057	0.73	+0.4
1,280,587	+		Sama_1057	0.73	+0.7
1,280,587	+		Sama_1057	0.73	+0.0
1,280,588	-		Sama_1057	0.73	+0.7
1,280,588	-		Sama_1057	0.73	-1.3
1,280,588	-		Sama_1057	0.73	+0.6
1,280,588	-		Sama_1057	0.73	+1.1
1,280,721	-		Sama_1057	0.78	+0.7
1,280,721	-		Sama_1057	0.78	-0.2
1,280,737	+		Sama_1057	0.79	+0.2
1,280,737	+		Sama_1057	0.79	-2.6
1,280,737	+		Sama_1057	0.79	-0.4
1,280,737	+		Sama_1057	0.79	+0.0
1,280,738	-		Sama_1057	0.79	+0.3
1,280,738	-		Sama_1057	0.79	+0.1
1,280,738	-		Sama_1057	0.79	+0.2
1,280,784	+		Sama_1057	0.80	-0.4
1,280,784	+		Sama_1057	0.80	+1.1
1,280,784	+		Sama_1057	0.80	+0.2
1,280,824	-		Sama_1057	0.82	+0.6
1,280,843	-		Sama_1057	0.82	-1.9
1,280,843	-		Sama_1057	0.82	+1.0
1,280,872	-		Sama_1057	0.83	-1.1
1,280,872	-		Sama_1057	0.83	+0.5
1,280,896	-		Sama_1057	0.84	+2.1
1,280,902	+		Sama_1057	0.84	-1.3
1,280,902	+		Sama_1057	0.84	-0.7
1,280,903	-		Sama_1057	0.84	+0.1
1,280,909	-		Sama_1057	0.85	+0.8
1,281,028	+		Sama_1057	0.89	-1.3
1,281,028	+		Sama_1057	0.89	+0.7
1,281,028	+		Sama_1057	0.89	-1.3
1,281,028	+		Sama_1057	0.89	-0.2
1,281,029	-		Sama_1057	0.89	+2.5
1,281,029	-		Sama_1057	0.89	-0.1
1,281,029	-		Sama_1057	0.89	+0.2
1,281,029	-		Sama_1057	0.89	-0.5
1,281,029	-		Sama_1057	0.89	+1.6
1,281,029	-		Sama_1057	0.89	-2.3
1,281,104	-				+0.2
1,281,151	+				-0.6
1,281,151	+				+0.2
1,281,153	+				+0.9
1,281,154	-				-0.7
1,281,154	-				-0.8
1,281,192	+				-1.5
1,281,246	+				+0.9
1,281,335	+				-1.1
1,281,335	+				-0.5
1,281,340	+				+3.2
1,281,340	+				+0.7
1,281,340	+				-0.3
1,281,340	+				-0.5
1,281,341	-				-0.2
1,281,343	+				+1.7
1,281,343	+				+0.3
1,281,343	+				-1.0
1,281,402	+				-2.4
1,281,437	+				-1.8
1,281,509	-				-2.7
1,281,872	+		Sama_1058	0.22	-0.9
1,281,940	+		Sama_1058	0.26	-1.3
1,282,072	+		Sama_1058	0.34	-1.6