Strain Fitness in Shewanella amazonensis SB2B around Sama_1001

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
1,212,042	+				-1.7
1,212,043	-				-0.6
1,212,099	+		Sama_1000	0.12	+0.7
1,212,099	+		Sama_1000	0.12	-1.3
1,212,099	+		Sama_1000	0.12	-0.3
1,212,100	-		Sama_1000	0.12	+1.3
1,212,100	-		Sama_1000	0.12	+0.2
1,212,110	+		Sama_1000	0.13	+0.1
1,212,110	+		Sama_1000	0.13	-0.4
1,212,110	+		Sama_1000	0.13	-0.2
1,212,111	-		Sama_1000	0.13	-2.5
1,212,111	-		Sama_1000	0.13	+0.5
1,212,111	-		Sama_1000	0.13	+0.5
1,212,111	-		Sama_1000	0.13	+0.3
1,212,111	-		Sama_1000	0.13	+0.6
1,212,111	-		Sama_1000	0.13	+0.9
1,212,113	+		Sama_1000	0.13	+0.1
1,212,113	+		Sama_1000	0.13	+0.8
1,212,114	-		Sama_1000	0.14	-0.3
1,212,114	-		Sama_1000	0.14	-0.1
1,212,136	+		Sama_1000	0.16	-0.9
1,212,137	-		Sama_1000	0.16	-0.0
1,212,137	-		Sama_1000	0.16	-0.3
1,212,196	+		Sama_1000	0.21	+0.9
1,212,197	-		Sama_1000	0.21	+1.8
1,212,211	-		Sama_1000	0.23	+1.2
1,212,463	+		Sama_1000	0.46	+1.0
1,212,463	+		Sama_1000	0.46	+0.6
1,212,463	+		Sama_1000	0.46	+1.5
1,212,464	-		Sama_1000	0.46	-0.5
1,212,464	-		Sama_1000	0.46	+0.1
1,212,466	+		Sama_1000	0.47	-0.5
1,212,503	+		Sama_1000	0.50	-0.7
1,212,557	+		Sama_1000	0.55	-0.2
1,212,558	-		Sama_1000	0.55	+0.3
1,212,624	+		Sama_1000	0.61	+0.3
1,212,624	+		Sama_1000	0.61	-0.9
1,212,624	+		Sama_1000	0.61	+0.1
1,212,624	+		Sama_1000	0.61	-0.4
1,212,624	+		Sama_1000	0.61	-1.2
1,212,624	+		Sama_1000	0.61	+0.9
1,212,624	+		Sama_1000	0.61	+0.5
1,212,624	+		Sama_1000	0.61	+0.3
1,212,624	+		Sama_1000	0.61	-0.5
1,212,624	+		Sama_1000	0.61	+0.2
1,212,624	+		Sama_1000	0.61	+0.7
1,212,625	-		Sama_1000	0.62	+0.5
1,212,625	-		Sama_1000	0.62	-1.9
1,212,625	-		Sama_1000	0.62	+0.8
1,212,625	-		Sama_1000	0.62	-2.4
1,212,625	-		Sama_1000	0.62	+0.5
1,212,625	-		Sama_1000	0.62	+0.6
1,212,625	-		Sama_1000	0.62	+0.5
1,212,625	-		Sama_1000	0.62	+0.4
1,212,625	-		Sama_1000	0.62	+0.1
1,212,625	-		Sama_1000	0.62	-1.1
1,212,625	-		Sama_1000	0.62	+0.5
1,212,625	-		Sama_1000	0.62	-0.7
1,212,656	+		Sama_1000	0.64	-0.3
1,212,657	-		Sama_1000	0.65	+0.6
1,212,767	-		Sama_1000	0.75	-0.4
1,212,830	+		Sama_1000	0.81	+0.7
1,212,883	+		Sama_1000	0.86	-0.2
1,212,883	+		Sama_1000	0.86	+1.6
1,212,883	+		Sama_1000	0.86	+0.5
1,212,883	+		Sama_1000	0.86	+0.6
1,212,883	+		Sama_1000	0.86	-0.4
1,212,883	+		Sama_1000	0.86	-1.6
1,212,883	+		Sama_1000	0.86	+0.9
1,212,884	-		Sama_1000	0.86	-0.9
1,212,884	-		Sama_1000	0.86	+0.4
1,212,884	-		Sama_1000	0.86	+0.5
1,212,884	-		Sama_1000	0.86	-0.4
1,212,884	-		Sama_1000	0.86	-1.5
1,212,884	-		Sama_1000	0.86	-0.2
1,212,884	-		Sama_1000	0.86	+0.1
1,212,887	+		Sama_1000	0.86	+0.2
1,212,887	+		Sama_1000	0.86	+1.1
1,212,888	-		Sama_1000	0.86	+0.5
1,212,955	-				+0.1
1,213,013	+				-0.5
1,213,023	+				-0.2
1,213,023	+				+1.3
1,213,023	+				+0.5
1,213,023	+				-0.9
1,213,023	+				+0.8
1,213,024	-				+1.1
1,213,024	-				+0.8
1,213,024	-				+1.4
1,213,024	-				-2.2
1,213,024	-				+0.2
1,213,024	-				-1.9
1,213,060	+				-1.3
1,213,060	+				+0.9
1,213,086	+				-1.8
1,213,109	+				+1.4
1,213,109	+				+1.0
1,213,110	-				+0.1
1,213,110	-				+0.6
1,213,142	-		Sama_1001	0.11	-2.8
1,213,175	+		Sama_1001	0.14	+3.4
1,213,247	+		Sama_1001	0.21	-1.9
1,213,247	+		Sama_1001	0.21	-0.3
1,213,325	+		Sama_1001	0.28	+1.2
1,213,342	+		Sama_1001	0.30	+0.8
1,213,342	+		Sama_1001	0.30	-3.3
1,213,342	+		Sama_1001	0.30	+1.1
1,213,342	+		Sama_1001	0.30	+1.0
1,213,343	-		Sama_1001	0.30	+1.3
1,213,343	-		Sama_1001	0.30	+0.0
1,213,378	-		Sama_1001	0.33	-0.0
1,213,378	-		Sama_1001	0.33	+1.7
1,213,389	+		Sama_1001	0.34	+0.2
1,213,389	+		Sama_1001	0.34	+0.1
1,213,390	-		Sama_1001	0.34	-1.1
1,213,390	-		Sama_1001	0.34	+0.3
1,213,390	-		Sama_1001	0.34	+1.5
1,213,390	-		Sama_1001	0.34	+1.1
1,213,390	-		Sama_1001	0.34	+1.4
1,213,419	+		Sama_1001	0.37	+1.3
1,213,419	+		Sama_1001	0.37	-0.5
1,213,419	+		Sama_1001	0.37	+0.2
1,213,419	+		Sama_1001	0.37	+3.3
1,213,419	+		Sama_1001	0.37	+0.4
1,213,419	+		Sama_1001	0.37	+0.7
1,213,419	+		Sama_1001	0.37	+0.3
1,213,419	+		Sama_1001	0.37	+1.1
1,213,420	-		Sama_1001	0.37	-0.4
1,213,420	-		Sama_1001	0.37	-1.2
1,213,421	+		Sama_1001	0.37	+0.1
1,213,421	+		Sama_1001	0.37	+1.1
1,213,421	+		Sama_1001	0.37	+1.1
1,213,422	-		Sama_1001	0.37	-2.7
1,213,422	-		Sama_1001	0.37	-0.5
1,213,422	-		Sama_1001	0.37	+1.0
1,213,449	-		Sama_1001	0.39	-0.9
1,213,458	-		Sama_1001	0.40	-1.2
1,213,466	+		Sama_1001	0.41	+0.4
1,213,504	+		Sama_1001	0.45	+1.0
1,213,505	-		Sama_1001	0.45	-0.2
1,213,505	-		Sama_1001	0.45	+0.4
1,213,511	+		Sama_1001	0.45	+0.3
1,213,511	+		Sama_1001	0.45	-3.1
1,213,568	+		Sama_1001	0.51	-2.2
1,213,568	+		Sama_1001	0.51	+0.5
1,213,568	+		Sama_1001	0.51	+0.5
1,213,569	-		Sama_1001	0.51	-0.9
1,213,666	-		Sama_1001	0.60	-0.0
1,213,674	+		Sama_1001	0.60	-0.9
1,213,772	+		Sama_1001	0.69	+0.2
1,213,778	+		Sama_1001	0.70	+0.0
1,213,778	+		Sama_1001	0.70	+1.1
1,213,779	-		Sama_1001	0.70	+0.7
1,213,779	-		Sama_1001	0.70	-1.0
1,213,779	-		Sama_1001	0.70	+0.5
1,213,800	+		Sama_1001	0.72	+0.1
1,213,801	-		Sama_1001	0.72	-0.4
1,213,891	+		Sama_1001	0.81	-0.8
1,213,891	+		Sama_1001	0.81	+1.6
1,213,891	+		Sama_1001	0.81	-1.6
1,213,928	-		Sama_1001	0.84	+0.7
1,213,928	-		Sama_1001	0.84	+0.2
1,213,928	-		Sama_1001	0.84	-1.7
1,213,995	-				+2.5
1,214,125	-				+0.7
1,214,131	-				+2.4
1,214,131	-				+0.7
1,214,169	+				+0.3
1,214,170	-		Sama_1002	0.10	+0.8
1,214,304	+		Sama_1002	0.63	+3.4
1,214,357	-		Sama_1002	0.85	+1.3
1,214,366	-		Sama_1002	0.88	+1.6
1,214,366	-		Sama_1002	0.88	+2.8
1,214,368	+		Sama_1002	0.89	+2.3
1,214,387	+				+1.1
1,214,499	-				+0.7
1,214,499	-				-0.5
1,214,534	+				+0.8
1,214,535	-				+1.8
1,214,535	-				-1.1
1,214,592	-				-3.4
1,214,615	-				+0.6
1,214,615	-				+0.6
1,214,615	-				+0.8
1,214,615	-				+3.0
1,214,630	-				-1.1
1,214,630	-				+0.3
1,214,672	+				-1.4
1,214,672	+				-0.5
1,214,673	-				+0.5
1,214,673	-				-0.6
1,214,673	-				-0.3
1,214,673	-				+1.5
1,214,724	+				+2.1
1,214,724	+				+0.4
1,214,786	+				-1.1
1,214,787	-				+1.8
1,214,832	-				-0.4
1,214,858	-		Sama_1003	0.11	+1.0
1,214,858	-		Sama_1003	0.11	-0.4
1,214,858	-		Sama_1003	0.11	-0.1
1,214,904	+		Sama_1003	0.30	-1.1
1,214,915	+		Sama_1003	0.35	+1.2
1,214,915	+		Sama_1003	0.35	+0.6
1,214,957	+		Sama_1003	0.52	+0.2
1,214,957	+		Sama_1003	0.52	+0.4
1,214,958	-		Sama_1003	0.52	-0.2
1,214,958	-		Sama_1003	0.52	+0.4
1,214,967	+		Sama_1003	0.56	-1.5
1,214,968	-		Sama_1003	0.56	+1.1
1,214,968	+		Sama_1003	0.56	-1.0
1,214,968	-		Sama_1003	0.56	-0.3
1,214,968	-		Sama_1003	0.56	+2.8
1,214,980	+		Sama_1003	0.61	-0.1
1,214,981	-		Sama_1003	0.62	-0.8
1,215,071	+				+1.4
1,215,072	-				+0.3
1,215,072	-				+0.4
1,215,072	-				-1.2
1,215,072	-				+0.2
1,215,072	-				-1.4