Strain Fitness in Shewanella amazonensis SB2B around Sama_R0035

Experiment: Minimal media, pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0957 and secG are separated by 1 nucleotidessecG and Sama_R0035 are separated by 12 nucleotidesSama_R0035 and Sama_R0036 are separated by 79 nucleotidesSama_R0036 and Sama_0959 are separated by 170 nucleotidesSama_0959 and nusA are separated by 27 nucleotides Sama_0957: Sama_0957 - Triose-phosphate isomerase (RefSeq), at 1,157,568 to 1,158,350 _0957 Sama_0958: secG - preprotein translocase subunit SecG (RefSeq), at 1,158,352 to 1,158,678 secG Sama_R0035: Sama_R0035 - tRNA-Leu (RefSeq), at 1,158,691 to 1,158,777 _R0035 Sama_R0036: Sama_R0036 - tRNA-Met (RefSeq), at 1,158,857 to 1,158,933 _R0036 Sama_0959: Sama_0959 - hypothetical protein (RefSeq), at 1,159,104 to 1,159,559 _0959 Sama_0960: nusA - transcription elongation factor NusA (RefSeq), at 1,159,587 to 1,161,086 nusA Position (kb) 1158 1159Strain fitness (log2 ratio) -2 -1 0 1at 1158.334 kb on + strandat 1158.624 kb on + strand, within secGat 1158.780 kb on + strandat 1158.791 kb on + strandat 1158.799 kb on + strandat 1158.823 kb on + strandat 1158.831 kb on + strandat 1158.831 kb on + strandat 1158.839 kb on + strandat 1158.841 kb on + strandat 1158.841 kb on + strandat 1158.841 kb on + strandat 1158.841 kb on + strandat 1158.971 kb on + strandat 1158.983 kb on + strandat 1158.983 kb on + strandat 1158.983 kb on + strandat 1158.983 kb on + strandat 1158.983 kb on + strandat 1158.983 kb on + strandat 1159.019 kb on + strandat 1159.021 kb on + strandat 1159.021 kb on + strandat 1159.072 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media, pH7
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1,158,334 + -2.0
1,158,624 + secG Sama_0958 0.83 +0.8
1,158,780 + -1.4
1,158,791 + -0.1
1,158,799 + -1.1
1,158,823 + -0.8
1,158,831 + -2.6
1,158,831 + -1.7
1,158,839 + -0.7
1,158,841 + -1.1
1,158,841 + -2.3
1,158,841 + -0.5
1,158,841 + -0.9
1,158,971 + +0.7
1,158,983 + -1.7
1,158,983 + +0.3
1,158,983 + -0.7
1,158,983 + -0.7
1,158,983 + -0.2
1,158,983 + +0.2
1,159,019 + +1.3
1,159,021 + +0.9
1,159,021 + -2.2
1,159,072 + -2.0

Or see this region's nucleotide sequence