Strain Fitness in Shewanella amazonensis SB2B around Sama_0889

Experiment: Minimal media, pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0888 and rpsP are separated by 157 nucleotidesrpsP and rimM are separated by 20 nucleotidesrimM and trmD are separated by 15 nucleotides Sama_0888: Sama_0888 - signal recognition particle protein (RefSeq), at 1,076,533 to 1,077,906 _0888 Sama_0889: rpsP - 30S ribosomal protein S16 (RefSeq), at 1,078,064 to 1,078,315 rpsP Sama_0890: rimM - 16S rRNA-processing protein RimM (RefSeq), at 1,078,336 to 1,078,866 rimM Sama_0891: trmD - tRNA (guanine-N(1)-)-methyltransferase (RefSeq), at 1,078,882 to 1,079,634 trmD Position (kb) 1078 1079Strain fitness (log2 ratio) -2 -1 0 1at 1077.870 kb on + strandat 1077.870 kb on + strandat 1077.870 kb on + strandat 1077.870 kb on + strandat 1077.870 kb on + strandat 1077.870 kb on + strandat 1077.870 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media, pH7
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1,077,870 + +1.1
1,077,870 + -2.4
1,077,870 + -0.6
1,077,870 + +1.0
1,077,870 + -0.8
1,077,870 + +1.2
1,077,870 + +1.5

Or see this region's nucleotide sequence