Strain Fitness in Shewanella amazonensis SB2B around Sama_0738

Experiment: Minimal media, pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0737 and Sama_0738 are separated by 154 nucleotidesSama_0738 and Sama_0739 are separated by 76 nucleotides Sama_0737: Sama_0737 - putative esterase (RefSeq), at 904,781 to 906,094 _0737 Sama_0738: Sama_0738 - thioredoxin 2 (RefSeq), at 906,249 to 906,671 _0738 Sama_0739: Sama_0739 - hypothetical protein (RefSeq), at 906,748 to 907,623 _0739 Position (kb) 906 907Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 905.254 kb on - strand, within Sama_0737at 905.292 kb on + strand, within Sama_0737at 905.293 kb on - strand, within Sama_0737at 905.293 kb on - strand, within Sama_0737at 905.317 kb on + strand, within Sama_0737at 905.317 kb on + strand, within Sama_0737at 905.318 kb on - strand, within Sama_0737at 905.318 kb on - strand, within Sama_0737at 905.318 kb on - strand, within Sama_0737at 905.318 kb on - strand, within Sama_0737at 905.318 kb on - strand, within Sama_0737at 905.318 kb on - strand, within Sama_0737at 905.318 kb on - strand, within Sama_0737at 905.318 kb on - strand, within Sama_0737at 905.321 kb on + strand, within Sama_0737at 905.321 kb on + strand, within Sama_0737at 905.321 kb on + strand, within Sama_0737at 905.403 kb on - strand, within Sama_0737at 905.439 kb on + strand, within Sama_0737at 905.439 kb on + strand, within Sama_0737at 905.439 kb on + strand, within Sama_0737at 905.461 kb on + strand, within Sama_0737at 905.466 kb on + strand, within Sama_0737at 905.466 kb on + strand, within Sama_0737at 905.466 kb on + strand, within Sama_0737at 905.466 kb on + strand, within Sama_0737at 905.467 kb on - strand, within Sama_0737at 905.475 kb on + strand, within Sama_0737at 905.545 kb on + strand, within Sama_0737at 905.546 kb on - strand, within Sama_0737at 905.565 kb on + strand, within Sama_0737at 905.565 kb on + strand, within Sama_0737at 905.638 kb on - strand, within Sama_0737at 905.707 kb on + strand, within Sama_0737at 905.707 kb on + strand, within Sama_0737at 905.708 kb on - strand, within Sama_0737at 905.709 kb on + strand, within Sama_0737at 905.709 kb on + strand, within Sama_0737at 905.709 kb on + strand, within Sama_0737at 905.709 kb on + strand, within Sama_0737at 905.710 kb on - strand, within Sama_0737at 905.710 kb on - strand, within Sama_0737at 905.710 kb on - strand, within Sama_0737at 905.744 kb on + strand, within Sama_0737at 905.779 kb on + strand, within Sama_0737at 905.780 kb on - strand, within Sama_0737at 905.829 kb on + strand, within Sama_0737at 905.829 kb on + strand, within Sama_0737at 905.829 kb on + strand, within Sama_0737at 905.829 kb on + strand, within Sama_0737at 905.829 kb on + strand, within Sama_0737at 905.829 kb on + strand, within Sama_0737at 905.829 kb on + strand, within Sama_0737at 905.829 kb on + strand, within Sama_0737at 905.829 kb on + strand, within Sama_0737at 905.829 kb on + strand, within Sama_0737at 905.829 kb on + strand, within Sama_0737at 905.830 kb on - strand, within Sama_0737at 905.830 kb on - strand, within Sama_0737at 905.830 kb on - strand, within Sama_0737at 905.830 kb on - strand, within Sama_0737at 905.863 kb on - strand, within Sama_0737at 905.880 kb on - strand, within Sama_0737at 905.925 kb on + strand, within Sama_0737at 905.926 kb on - strand, within Sama_0737at 906.008 kb on + strandat 906.008 kb on + strandat 906.009 kb on - strandat 906.114 kb on + strandat 906.136 kb on - strandat 906.188 kb on + strandat 906.188 kb on + strandat 906.188 kb on + strandat 906.188 kb on + strandat 906.188 kb on + strandat 906.188 kb on + strandat 906.188 kb on + strandat 906.189 kb on - strandat 906.189 kb on - strandat 906.189 kb on - strandat 906.189 kb on - strandat 906.192 kb on - strandat 906.192 kb on - strandat 906.192 kb on - strandat 906.192 kb on - strandat 906.231 kb on + strandat 906.244 kb on + strandat 906.248 kb on + strandat 906.248 kb on + strandat 906.249 kb on - strandat 906.249 kb on - strandat 906.249 kb on - strandat 906.249 kb on - strandat 906.249 kb on - strandat 906.333 kb on - strand, within Sama_0738at 906.348 kb on - strand, within Sama_0738at 906.470 kb on - strand, within Sama_0738at 906.604 kb on + strand, within Sama_0738at 906.604 kb on + strand, within Sama_0738at 906.604 kb on + strand, within Sama_0738at 906.627 kb on - strand, within Sama_0738at 906.673 kb on - strandat 906.698 kb on - strandat 906.718 kb on + strandat 906.719 kb on - strandat 906.747 kb on + strandat 906.747 kb on + strandat 906.747 kb on + strandat 906.747 kb on + strandat 906.748 kb on - strandat 906.748 kb on - strandat 906.758 kb on + strandat 906.758 kb on + strandat 906.758 kb on + strandat 906.758 kb on + strandat 906.759 kb on - strandat 906.934 kb on + strand, within Sama_0739at 906.935 kb on - strand, within Sama_0739at 906.996 kb on + strand, within Sama_0739at 907.020 kb on + strand, within Sama_0739at 907.020 kb on + strand, within Sama_0739at 907.041 kb on + strand, within Sama_0739at 907.116 kb on + strand, within Sama_0739at 907.116 kb on + strand, within Sama_0739at 907.126 kb on + strand, within Sama_0739at 907.126 kb on + strand, within Sama_0739at 907.126 kb on + strand, within Sama_0739at 907.127 kb on - strand, within Sama_0739at 907.127 kb on - strand, within Sama_0739at 907.164 kb on + strand, within Sama_0739at 907.164 kb on + strand, within Sama_0739at 907.164 kb on + strand, within Sama_0739at 907.164 kb on + strand, within Sama_0739at 907.165 kb on - strand, within Sama_0739at 907.165 kb on - strand, within Sama_0739at 907.236 kb on - strand, within Sama_0739at 907.236 kb on - strand, within Sama_0739at 907.276 kb on + strand, within Sama_0739at 907.277 kb on - strand, within Sama_0739at 907.289 kb on + strand, within Sama_0739at 907.289 kb on + strand, within Sama_0739at 907.289 kb on + strand, within Sama_0739at 907.289 kb on + strand, within Sama_0739at 907.290 kb on - strand, within Sama_0739at 907.290 kb on - strand, within Sama_0739at 907.290 kb on - strand, within Sama_0739at 907.366 kb on + strand, within Sama_0739at 907.367 kb on - strand, within Sama_0739at 907.367 kb on - strand, within Sama_0739at 907.379 kb on + strand, within Sama_0739at 907.379 kb on + strand, within Sama_0739at 907.380 kb on - strand, within Sama_0739at 907.485 kb on + strand, within Sama_0739at 907.518 kb on + strand, within Sama_0739at 907.540 kb on + strandat 907.540 kb on + strandat 907.540 kb on + strandat 907.541 kb on - strandat 907.600 kb on + strandat 907.601 kb on - strandat 907.601 kb on - strandat 907.601 kb on - strandat 907.607 kb on + strandat 907.608 kb on - strandat 907.608 kb on - strandat 907.608 kb on - strandat 907.608 kb on - strandat 907.622 kb on - strandat 907.636 kb on + strandat 907.649 kb on - strandat 907.659 kb on + strandat 907.659 kb on + strandat 907.659 kb on + strandat 907.660 kb on - strandat 907.660 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media, pH7
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905,254 - Sama_0737 0.36 -1.0
905,292 + Sama_0737 0.39 +0.7
905,293 - Sama_0737 0.39 -0.3
905,293 - Sama_0737 0.39 +1.7
905,317 + Sama_0737 0.41 -2.8
905,317 + Sama_0737 0.41 +0.0
905,318 - Sama_0737 0.41 +0.4
905,318 - Sama_0737 0.41 +0.1
905,318 - Sama_0737 0.41 -3.0
905,318 - Sama_0737 0.41 +0.3
905,318 - Sama_0737 0.41 -0.7
905,318 - Sama_0737 0.41 +0.6
905,318 - Sama_0737 0.41 -1.0
905,318 - Sama_0737 0.41 +0.4
905,321 + Sama_0737 0.41 -1.1
905,321 + Sama_0737 0.41 +0.3
905,321 + Sama_0737 0.41 -0.4
905,403 - Sama_0737 0.47 -0.0
905,439 + Sama_0737 0.50 -0.6
905,439 + Sama_0737 0.50 -0.8
905,439 + Sama_0737 0.50 +0.9
905,461 + Sama_0737 0.52 -1.0
905,466 + Sama_0737 0.52 -0.2
905,466 + Sama_0737 0.52 +0.9
905,466 + Sama_0737 0.52 -1.2
905,466 + Sama_0737 0.52 +0.0
905,467 - Sama_0737 0.52 -2.6
905,475 + Sama_0737 0.53 +0.9
905,545 + Sama_0737 0.58 -0.2
905,546 - Sama_0737 0.58 -1.0
905,565 + Sama_0737 0.60 -0.3
905,565 + Sama_0737 0.60 +0.4
905,638 - Sama_0737 0.65 -0.3
905,707 + Sama_0737 0.70 +0.3
905,707 + Sama_0737 0.70 -1.5
905,708 - Sama_0737 0.71 +0.3
905,709 + Sama_0737 0.71 -1.0
905,709 + Sama_0737 0.71 +0.7
905,709 + Sama_0737 0.71 -0.2
905,709 + Sama_0737 0.71 +0.8
905,710 - Sama_0737 0.71 -0.2
905,710 - Sama_0737 0.71 -1.3
905,710 - Sama_0737 0.71 +1.1
905,744 + Sama_0737 0.73 -0.8
905,779 + Sama_0737 0.76 +1.3
905,780 - Sama_0737 0.76 +0.4
905,829 + Sama_0737 0.80 -0.2
905,829 + Sama_0737 0.80 -2.0
905,829 + Sama_0737 0.80 +0.0
905,829 + Sama_0737 0.80 +0.1
905,829 + Sama_0737 0.80 +0.1
905,829 + Sama_0737 0.80 +1.2
905,829 + Sama_0737 0.80 -0.5
905,829 + Sama_0737 0.80 -2.0
905,829 + Sama_0737 0.80 +0.3
905,829 + Sama_0737 0.80 +1.4
905,829 + Sama_0737 0.80 -1.2
905,830 - Sama_0737 0.80 -0.3
905,830 - Sama_0737 0.80 -1.9
905,830 - Sama_0737 0.80 -0.2
905,830 - Sama_0737 0.80 -0.5
905,863 - Sama_0737 0.82 +0.4
905,880 - Sama_0737 0.84 -1.9
905,925 + Sama_0737 0.87 +2.3
905,926 - Sama_0737 0.87 -0.5
906,008 + -1.0
906,008 + +1.3
906,009 - +1.1
906,114 + +1.1
906,136 - +1.5
906,188 + -0.0
906,188 + -0.1
906,188 + +0.7
906,188 + -0.2
906,188 + -0.5
906,188 + -0.9
906,188 + -0.4
906,189 - -2.0
906,189 - +1.4
906,189 - +0.3
906,189 - -0.3
906,192 - +1.3
906,192 - +0.9
906,192 - +1.0
906,192 - -1.6
906,231 + +0.7
906,244 + -0.3
906,248 + +0.6
906,248 + +0.6
906,249 - +1.4
906,249 - +0.3
906,249 - -1.4
906,249 - +1.2
906,249 - +0.9
906,333 - Sama_0738 0.20 -2.0
906,348 - Sama_0738 0.23 +0.0
906,470 - Sama_0738 0.52 -0.5
906,604 + Sama_0738 0.84 +0.6
906,604 + Sama_0738 0.84 +0.9
906,604 + Sama_0738 0.84 +0.1
906,627 - Sama_0738 0.89 -0.7
906,673 - +1.0
906,698 - +0.0
906,718 + -0.3
906,719 - -0.2
906,747 + +0.4
906,747 + +0.7
906,747 + -0.3
906,747 + +0.5
906,748 - -2.7
906,748 - +1.1
906,758 + +1.3
906,758 + -0.7
906,758 + -0.9
906,758 + -0.3
906,759 - +0.8
906,934 + Sama_0739 0.21 +1.2
906,935 - Sama_0739 0.21 +0.4
906,996 + Sama_0739 0.28 +1.2
907,020 + Sama_0739 0.31 -1.5
907,020 + Sama_0739 0.31 +0.1
907,041 + Sama_0739 0.33 +0.8
907,116 + Sama_0739 0.42 +1.5
907,116 + Sama_0739 0.42 -1.5
907,126 + Sama_0739 0.43 +0.0
907,126 + Sama_0739 0.43 +0.6
907,126 + Sama_0739 0.43 -0.3
907,127 - Sama_0739 0.43 +1.5
907,127 - Sama_0739 0.43 +0.5
907,164 + Sama_0739 0.47 -1.5
907,164 + Sama_0739 0.47 +0.5
907,164 + Sama_0739 0.47 -1.5
907,164 + Sama_0739 0.47 +1.2
907,165 - Sama_0739 0.48 +0.2
907,165 - Sama_0739 0.48 +0.2
907,236 - Sama_0739 0.56 -2.5
907,236 - Sama_0739 0.56 -0.6
907,276 + Sama_0739 0.60 -2.0
907,277 - Sama_0739 0.60 -1.3
907,289 + Sama_0739 0.62 -0.9
907,289 + Sama_0739 0.62 -0.7
907,289 + Sama_0739 0.62 +0.2
907,289 + Sama_0739 0.62 +0.9
907,290 - Sama_0739 0.62 +1.5
907,290 - Sama_0739 0.62 -0.3
907,290 - Sama_0739 0.62 +0.1
907,366 + Sama_0739 0.71 -1.2
907,367 - Sama_0739 0.71 -1.3
907,367 - Sama_0739 0.71 +0.1
907,379 + Sama_0739 0.72 +2.5
907,379 + Sama_0739 0.72 +0.6
907,380 - Sama_0739 0.72 +0.6
907,485 + Sama_0739 0.84 +0.2
907,518 + Sama_0739 0.88 +1.3
907,540 + -0.3
907,540 + +0.2
907,540 + -1.0
907,541 - -1.8
907,600 + -1.4
907,601 - +0.3
907,601 - +0.4
907,601 - -2.0
907,607 + +1.0
907,608 - -1.7
907,608 - -1.2
907,608 - -1.3
907,608 - +0.3
907,622 - -1.5
907,636 + +0.4
907,649 - -0.1
907,659 + -1.0
907,659 + -0.0
907,659 + +0.6
907,660 - +1.5
907,660 - -1.7

Or see this region's nucleotide sequence