Strain Fitness in Shewanella oneidensis MR-1 around SO4045

Experiment: L-Leucine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Leucine (N)
4,198,045	-		SO4044	0.30	-0.7
4,198,079	+		SO4044	0.38	-0.2
4,198,087	-		SO4044	0.40	+2.4
4,198,101	+		SO4044	0.43	+1.9
4,198,101	+		SO4044	0.43	-1.3
4,198,154	+		SO4044	0.56	-0.8
4,198,175	-		SO4044	0.61	-0.5
4,198,175	-		SO4044	0.61	+0.8
4,198,230	+		SO4044	0.74	-0.2
4,198,266	-		SO4044	0.82	-1.4
4,198,279	+		SO4044	0.85	-0.6
4,198,279	+		SO4044	0.85	-0.9
4,198,287	-		SO4044	0.87	+0.7
4,198,351	-				-0.8
4,198,351	-				-0.8
4,198,367	+				-1.2
4,198,367	+				+0.3
4,198,367	+				-0.4
4,198,419	-				-0.1
4,198,431	+				-0.3
4,198,658	-				-0.6
4,198,754	+				+0.3
4,198,799	+				+0.3
4,198,805	+				+0.0
4,199,080	+		SO4045	0.16	+1.4
4,199,080	+		SO4045	0.16	+0.4
4,199,080	+		SO4045	0.16	+0.3
4,199,080	+		SO4045	0.16	-0.4
4,199,080	+		SO4045	0.16	-0.7
4,199,088	-		SO4045	0.18	-0.5
4,199,122	+		SO4045	0.27	-0.7
4,199,122	+		SO4045	0.27	+0.2
4,199,128	-		SO4045	0.29	-0.1
4,199,130	-		SO4045	0.30	+0.6
4,199,134	-		SO4045	0.31	-0.4
4,199,145	+		SO4045	0.34	+0.1
4,199,145	+		SO4045	0.34	+0.3
4,199,145	+		SO4045	0.34	+0.3
4,199,145	+		SO4045	0.34	-0.7
4,199,145	+		SO4045	0.34	-1.0
4,199,145	+		SO4045	0.34	-0.8
4,199,153	-		SO4045	0.36	+1.1
4,199,153	-		SO4045	0.36	-0.3
4,199,157	+		SO4045	0.37	+0.3
4,199,157	+		SO4045	0.37	+0.3
4,199,202	+		SO4045	0.49	-1.0
4,199,213	+		SO4045	0.52	+0.2
4,199,213	+		SO4045	0.52	-0.9
4,199,213	+		SO4045	0.52	+0.6
4,199,216	+		SO4045	0.53	-0.8
4,199,221	+		SO4045	0.54	+0.1
4,199,226	+		SO4045	0.55	-0.5
4,199,226	+		SO4045	0.55	-0.0
4,199,226	+		SO4045	0.55	-1.7
4,199,226	+		SO4045	0.55	+0.1
4,199,226	+		SO4045	0.55	-0.6
4,199,226	+		SO4045	0.55	+0.8
4,199,234	-		SO4045	0.58	-0.5
4,199,234	-		SO4045	0.58	+0.1
4,199,234	-		SO4045	0.58	+0.3
4,199,234	-		SO4045	0.58	+0.5
4,199,234	-		SO4045	0.58	-0.6
4,199,234	-		SO4045	0.58	-0.2
4,199,237	+		SO4045	0.58	+1.0
4,199,237	+		SO4045	0.58	-1.4
4,199,238	+		SO4045	0.59	-0.3
4,199,238	+		SO4045	0.59	-0.7
4,199,238	+		SO4045	0.59	-0.6
4,199,238	+		SO4045	0.59	-0.9
4,199,238	+		SO4045	0.59	-0.5
4,199,246	-		SO4045	0.61	-1.3
4,199,246	-		SO4045	0.61	-0.7
4,199,246	-		SO4045	0.61	-1.2
4,199,246	-		SO4045	0.61	-1.3
4,199,246	-		SO4045	0.61	-0.5
4,199,246	-		SO4045	0.61	-0.6
4,199,246	-		SO4045	0.61	+0.0
4,199,246	-		SO4045	0.61	-0.8
4,199,246	-		SO4045	0.61	+0.3
4,199,246	-		SO4045	0.61	+4.4
4,199,246	-		SO4045	0.61	-0.7
4,199,272	+		SO4045	0.68	-1.2
4,199,272	+		SO4045	0.68	-1.0
4,199,272	+		SO4045	0.68	-1.2
4,199,272	+		SO4045	0.68	-0.3
4,199,272	-		SO4045	0.68	-1.1
4,199,280	-		SO4045	0.70	-0.1
4,199,280	-		SO4045	0.70	-0.6
4,199,280	-		SO4045	0.70	+0.1
4,199,280	-		SO4045	0.70	+0.1
4,199,280	-		SO4045	0.70	+0.6
4,199,280	-		SO4045	0.70	-0.5
4,199,283	+		SO4045	0.71	+0.5
4,199,303	+		SO4045	0.76	-0.8
4,199,303	+		SO4045	0.76	+0.3
4,199,314	-		SO4045	0.79	-0.6
4,199,319	+		SO4045	0.80	-0.0
4,199,319	+		SO4045	0.80	-0.7
4,199,321	-		SO4045	0.81	+0.2
4,199,321	-		SO4045	0.81	+0.2
4,199,329	+		SO4045	0.83	+0.6
4,199,346	+		SO4045	0.88	+0.5
4,199,346	+		SO4045	0.88	-0.6
4,199,346	+		SO4045	0.88	-1.0
4,199,346	-		SO4045	0.88	+0.1
4,199,354	-				+0.3
4,199,354	-				+0.1
4,199,354	-				-0.8
4,199,369	-				+0.5
4,199,369	-				-0.2
4,199,398	+				-0.9
4,199,406	-				-1.0
4,199,406	-				+1.5
4,199,417	+				-1.4
4,199,418	+				+0.3
4,199,428	+				-0.0
4,199,430	+				-0.4
4,199,430	+				-0.9
4,199,438	-				+0.5
4,199,438	-				-2.0
4,199,439	+				+0.0
4,199,448	-				-1.1
4,199,451	+				+0.1
4,199,459	-				-0.4
4,199,465	+				-1.0
4,199,465	+				+0.1
4,199,465	+				-0.2
4,199,465	+				-0.3
4,199,473	-				-0.5
4,199,473	-				+2.4
4,199,473	-				-1.5
4,199,473	-				-0.8
4,199,477	+				+0.3
4,199,477	+				+0.4
4,199,481	-				+0.2
4,199,521	+				+0.3
4,199,521	+				+0.6
4,199,521	+				+1.1
4,199,521	+				+0.0
4,199,521	+				-0.5
4,199,521	+				+0.2
4,199,521	+				+0.2
4,199,521	+				+0.1
4,199,521	+				-1.5
4,199,521	+				+0.1
4,199,521	+				-0.6
4,199,529	-				-0.2
4,199,529	-				-1.3
4,199,529	-				-0.8
4,199,529	-				-0.2
4,199,529	-				+1.3
4,199,552	-				+0.6
4,199,559	+				-0.3
4,199,561	+				-0.3
4,199,561	+				-0.3
4,199,576	-				+1.8
4,199,576	-				+0.4
4,199,578	+				-0.7
4,199,578	+				-0.2
4,199,586	-				-0.4
4,199,586	-				-0.3
4,199,586	-				-0.7
4,199,590	-		SO4046	0.10	-0.3
4,199,590	-		SO4046	0.10	-0.9
4,199,590	-		SO4046	0.10	+0.8
4,199,593	+		SO4046	0.11	+0.4
4,199,593	+		SO4046	0.11	-1.1
4,199,599	-		SO4046	0.12	-0.4
4,199,626	-		SO4046	0.18	-0.6
4,199,628	+		SO4046	0.18	+0.8
4,199,636	-		SO4046	0.20	-0.1
4,199,664	-		SO4046	0.25	-0.7
4,199,666	+		SO4046	0.25	+0.3
4,199,673	-		SO4046	0.27	+0.5
4,199,732	-		SO4046	0.38	-0.2
4,199,735	+		SO4046	0.39	-0.7
4,199,735	+		SO4046	0.39	-0.1
4,199,735	+		SO4046	0.39	-0.2
4,199,737	+		SO4046	0.39	-0.2
4,199,743	-		SO4046	0.41	-0.8
4,199,743	-		SO4046	0.41	-1.4
4,199,743	-		SO4046	0.41	-0.1
4,199,743	-		SO4046	0.41	-0.5
4,199,770	+		SO4046	0.46	+0.5
4,199,789	+		SO4046	0.50	+0.0
4,199,794	+		SO4046	0.51	-0.2
4,199,794	+		SO4046	0.51	-0.2
4,199,794	+		SO4046	0.51	+1.1
4,199,794	+		SO4046	0.51	-0.4
4,199,794	+		SO4046	0.51	+1.2
4,199,794	+		SO4046	0.51	-0.0
4,199,794	+		SO4046	0.51	-0.9
4,199,794	+		SO4046	0.51	+0.2
4,199,802	+		SO4046	0.52	-0.2
4,199,802	+		SO4046	0.52	-1.7
4,199,802	-		SO4046	0.52	+0.8
4,199,802	-		SO4046	0.52	+0.3
4,199,802	-		SO4046	0.52	+0.2
4,199,802	-		SO4046	0.52	-1.1
4,199,802	-		SO4046	0.52	+1.8
4,199,802	-		SO4046	0.52	+0.2
4,199,802	-		SO4046	0.52	-0.0
4,199,802	-		SO4046	0.52	-2.4
4,199,802	-		SO4046	0.52	-0.6
4,199,802	-		SO4046	0.52	-0.4
4,199,802	-		SO4046	0.52	-0.6
4,199,802	-		SO4046	0.52	+0.2
4,199,802	-		SO4046	0.52	+0.0
4,199,802	-		SO4046	0.52	-0.3
4,199,807	+		SO4046	0.53	-0.1
4,199,815	-		SO4046	0.55	+0.6
4,199,827	+		SO4046	0.57	-0.1
4,199,830	+		SO4046	0.58	-0.0
4,199,831	-		SO4046	0.58	+0.8
4,199,832	+		SO4046	0.58	+0.0
4,199,838	-		SO4046	0.59	+1.0
4,199,843	-		SO4046	0.60	+1.0
4,199,874	+		SO4046	0.66	-0.5
4,199,874	+		SO4046	0.66	+0.2
4,199,882	-		SO4046	0.68	-0.3
4,199,882	-		SO4046	0.68	+2.8
4,199,887	+		SO4046	0.69	+0.2
4,199,887	+		SO4046	0.69	-0.3
4,199,895	-		SO4046	0.71	+1.8
4,199,895	-		SO4046	0.71	+1.0
4,199,900	-		SO4046	0.72	-1.2
4,199,907	-		SO4046	0.73	-0.3
4,199,911	+		SO4046	0.74	-1.0
4,199,934	+		SO4046	0.78	+0.6
4,199,934	+		SO4046	0.78	-0.4
4,199,934	+		SO4046	0.78	-0.2
4,199,934	+		SO4046	0.78	-0.5
4,199,934	+		SO4046	0.78	-0.7
4,199,934	+		SO4046	0.78	-0.7
4,199,934	+		SO4046	0.78	-1.1
4,199,934	+		SO4046	0.78	-0.4
4,199,934	+		SO4046	0.78	+0.4
4,199,934	+		SO4046	0.78	-1.9
4,199,934	+		SO4046	0.78	+0.1
4,199,934	+		SO4046	0.78	-0.5
4,199,934	+		SO4046	0.78	+0.8
4,199,934	+		SO4046	0.78	+0.0
4,199,934	+		SO4046	0.78	+0.5
4,199,934	+		SO4046	0.78	-0.1
4,199,934	+		SO4046	0.78	-0.1
4,199,934	+		SO4046	0.78	+0.7
4,199,934	+		SO4046	0.78	+0.3
4,199,934	+		SO4046	0.78	+0.6
4,199,934	+		SO4046	0.78	+0.1
4,199,934	+		SO4046	0.78	-0.3
4,199,934	+		SO4046	0.78	-0.5
4,199,934	+		SO4046	0.78	-0.9
4,199,934	+		SO4046	0.78	+0.4
4,199,934	+		SO4046	0.78	-1.1
4,199,934	+		SO4046	0.78	-0.5
4,199,934	+		SO4046	0.78	-0.2
4,199,934	+		SO4046	0.78	+0.3
4,199,934	+		SO4046	0.78	+0.4
4,199,934	+		SO4046	0.78	-0.7
4,199,934	+		SO4046	0.78	-0.6
4,199,934	+		SO4046	0.78	+0.1
4,199,934	+		SO4046	0.78	+1.1
4,199,934	+		SO4046	0.78	+0.2
4,199,934	+		SO4046	0.78	-0.4
4,199,942	-		SO4046	0.80	-1.1
4,199,942	-		SO4046	0.80	+0.4
4,199,942	-		SO4046	0.80	-0.7
4,199,942	-		SO4046	0.80	-0.5
4,199,942	-		SO4046	0.80	+0.6
4,199,942	-		SO4046	0.80	+0.2
4,199,942	-		SO4046	0.80	-1.9
4,199,942	-		SO4046	0.80	+0.0
4,199,942	-		SO4046	0.80	-0.4
4,199,942	-		SO4046	0.80	+0.5
4,199,942	-		SO4046	0.80	-0.4
4,199,942	-		SO4046	0.80	-0.3
4,199,942	-		SO4046	0.80	-0.6
4,199,942	-		SO4046	0.80	-0.5
4,199,942	-		SO4046	0.80	-0.3
4,199,942	-		SO4046	0.80	+0.1
4,199,942	-		SO4046	0.80	+0.2
4,199,942	-		SO4046	0.80	+0.3
4,199,942	-		SO4046	0.80	+1.3
4,199,942	-		SO4046	0.80	-0.9
4,199,942	-		SO4046	0.80	+0.6
4,199,942	-		SO4046	0.80	-0.1
4,199,942	-		SO4046	0.80	-0.3
4,199,942	-		SO4046	0.80	+0.3
4,199,942	-		SO4046	0.80	+0.1
4,199,942	-		SO4046	0.80	+0.5
4,199,942	-		SO4046	0.80	+0.4
4,199,942	-		SO4046	0.80	-1.5
4,199,946	+		SO4046	0.81	+2.4
4,199,946	+		SO4046	0.81	-0.3
4,199,946	+		SO4046	0.81	+2.2
4,199,946	+		SO4046	0.81	+0.5
4,199,946	+		SO4046	0.81	+1.1
4,199,954	+		SO4046	0.82	-0.9
4,199,954	-		SO4046	0.82	-1.0
4,199,954	-		SO4046	0.82	+0.6
4,199,954	-		SO4046	0.82	-0.2
4,199,954	-		SO4046	0.82	-0.1
4,199,954	-		SO4046	0.82	+0.6
4,199,974	-		SO4046	0.86	-0.2
4,199,974	-		SO4046	0.86	+0.6
4,200,030	+				+0.2
4,200,055	-				+0.3
4,200,059	+				+0.2
4,200,067	-				+2.4
4,200,072	+				-0.9
4,200,080	+				-0.7
4,200,080	-				+0.2
4,200,082	+				+0.3
4,200,088	-				-0.4
4,200,090	-				-0.5
4,200,131	+				+0.7
4,200,134	-				-1.1
4,200,135	+				+0.1
4,200,143	+				+1.2
4,200,143	-				+0.3
4,200,151	-				+0.1
4,200,162	+				-0.2
4,200,188	-				-0.4
4,200,212	-				-0.5
4,200,269	+				-0.2
4,200,274	+				+0.1
4,200,336	-				-0.2