Strain Fitness in Shewanella oneidensis MR-1 around SO1042

Experiment: L-Leucine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Leucine (N)
1,079,853	+				+2.4
1,079,861	+				-0.2
1,079,868	+				-0.7
1,079,876	+				+0.8
1,079,904	-				-0.3
1,079,906	+				+0.3
1,079,926	+				+0.8
1,079,933	+				-0.3
1,079,934	+				+1.3
1,079,934	+				+0.8
1,079,934	-				+0.6
1,079,935	-				+1.0
1,079,941	-				+0.5
1,079,942	-				+2.0
1,079,942	-				-0.4
1,079,942	-				+0.5
1,079,943	+				+0.4
1,079,943	+				+0.7
1,079,951	-				-0.3
1,079,977	+				+1.4
1,079,977	+				-1.3
1,079,980	-				+0.6
1,079,985	-				+1.3
1,079,989	-				-0.3
1,079,989	-				-0.5
1,079,990	+				-1.1
1,079,990	+				+0.7
1,079,990	+				+1.2
1,079,991	+				+0.4
1,079,998	-				+0.1
1,079,998	-				-1.5
1,080,018	+				-0.7
1,080,018	+				+0.1
1,080,026	-				+0.7
1,080,026	-				+0.7
1,080,029	+				+0.0
1,080,035	+				-0.0
1,080,038	-				-0.7
1,080,048	-				-0.4
1,080,049	-				-0.3
1,080,062	-				-0.6
1,080,062	-				+0.6
1,080,075	+				-0.4
1,080,075	+				-0.7
1,080,079	-				-0.8
1,080,083	-				-1.1
1,080,085	+				+0.5
1,080,091	-				+0.4
1,080,091	-				+1.1
1,080,094	-				-0.7
1,080,143	+				+0.9
1,080,143	+				-1.0
1,080,143	+				+1.0
1,080,143	+				+0.4
1,080,151	-				+2.1
1,080,151	-				+0.3
1,080,151	-				+0.1
1,080,151	-				+0.2
1,080,156	-				-0.6
1,080,161	-				+1.0
1,080,199	+				-0.6
1,080,207	-				-0.7
1,080,303	-				+0.7
1,080,343	+				+0.6
1,080,345	+				-0.3
1,080,347	-				+0.2
1,080,347	-				-0.1
1,080,350	+				+0.1
1,080,353	-				+2.5
1,080,355	+				-0.8
1,080,355	+				-0.3
1,080,355	+				+0.1
1,080,355	+				+1.0
1,080,355	+				+0.1
1,080,355	+				+0.1
1,080,355	+				+0.8
1,080,355	+				-0.2
1,080,355	+				+0.8
1,080,355	+				+0.6
1,080,355	+				+2.4
1,080,355	+				+0.2
1,080,355	+				-1.0
1,080,355	+				+0.8
1,080,355	+				-0.4
1,080,355	+				-0.5
1,080,355	+				+0.3
1,080,355	+				-0.0
1,080,355	+				-0.7
1,080,355	+				+0.3
1,080,355	+				-1.1
1,080,355	+				-0.4
1,080,355	+				-0.5
1,080,355	+				-0.4
1,080,355	+				+0.4
1,080,358	-				+0.5
1,080,358	-				-1.0
1,080,358	-				-1.0
1,080,358	-				-0.4
1,080,358	-				-0.1
1,080,358	-				+0.4
1,080,362	-				-0.9
1,080,363	-				+0.3
1,080,363	-				-2.1
1,080,363	-				-1.6
1,080,363	-				+0.1
1,080,363	-				+1.2
1,080,363	-				+0.1
1,080,363	-				+1.2
1,080,363	-				-0.8
1,080,363	-				+0.1
1,080,363	-				-1.4
1,080,363	-				-0.6
1,080,363	-				-0.3
1,080,363	-				-0.5
1,080,363	-				+0.5
1,080,363	-				-0.9
1,080,363	-				+0.1
1,080,363	-				-0.4
1,080,363	-				-0.4
1,080,363	-				+0.2
1,080,363	-				+0.5
1,080,364	+				+0.6
1,080,369	+				+1.3
1,080,390	+				+0.1
1,080,425	+				-1.3
1,080,430	+				-0.9
1,080,453	+				-0.5
1,080,453	-				+1.0
1,080,512	+				-1.1
1,080,523	+				-1.2
1,080,531	-				-1.3
1,080,534	-				-0.1
1,080,536	+				-0.2
1,080,539	-				-0.3
1,080,552	-				+0.3
1,080,558	-				-0.2
1,080,560	+				+0.2
1,080,578	+				+0.1
1,080,581	+				-0.4
1,080,581	+				+0.4
1,080,581	+				-1.0
1,080,581	-				+0.1
1,080,581	-				-0.3
1,080,586	-				-1.2
1,080,589	+				+0.0
1,080,589	-				+0.3
1,080,589	-				+0.4
1,080,589	-				+0.1
1,080,589	-				+0.4
1,080,589	-				-0.4
1,080,589	-				-0.6
1,080,596	+				-0.4
1,080,596	+				-0.0
1,080,604	-				+0.5
1,080,604	-				+0.8
1,080,604	-				+0.1
1,080,604	-				-0.5
1,080,670	-				+0.4
1,080,706	+				+0.7
1,080,727	-				-1.3
1,080,732	-				-1.6
1,080,734	-				-0.1
1,080,746	-				+1.7
1,080,796	+				-0.6
1,080,797	+				-1.3
1,080,832	+				-0.4
1,080,832	+				-0.4
1,080,832	+				-0.3
1,080,861	-				+1.4
1,080,861	-				-0.2
1,080,865	+				-1.7
1,080,880	+				-0.3
1,080,943	+		SO1042	0.16	-0.2
1,080,951	-		SO1042	0.17	-0.0
1,080,951	-		SO1042	0.17	+0.3
1,080,991	+		SO1042	0.22	-2.0
1,080,991	+		SO1042	0.22	-0.6
1,080,999	-		SO1042	0.23	-1.5
1,081,012	+		SO1042	0.25	-1.7
1,081,079	-		SO1042	0.34	-0.4
1,081,116	+		SO1042	0.40	-1.0
1,081,147	+		SO1042	0.44	-0.5
1,081,154	-		SO1042	0.45	-0.4
1,081,217	+		SO1042	0.53	-1.3
1,081,410	+		SO1042	0.80	+0.1
1,081,410	+		SO1042	0.80	-1.6
1,081,418	-		SO1042	0.81	-0.4
1,081,455	+		SO1042	0.86	-0.5
1,081,460	+		SO1042	0.87	-1.5
1,081,476	-		SO1042	0.89	-1.1
1,081,566	-				-1.0
1,081,585	+				+0.0
1,081,585	+				-1.9
1,081,585	+				-0.5
1,081,593	-				+0.9
1,081,593	-				-1.5
1,081,598	+				+1.1
1,081,613	-				-0.9
1,081,614	+				-1.9
1,081,622	-		SO1043	0.11	-1.3
1,081,631	+		SO1043	0.12	-0.7
1,081,631	+		SO1043	0.12	-0.6
1,081,631	+		SO1043	0.12	-0.6
1,081,631	+		SO1043	0.12	-0.8
1,081,631	+		SO1043	0.12	-2.3
1,081,639	+		SO1043	0.14	-1.7
1,081,639	-		SO1043	0.14	-1.3
1,081,639	-		SO1043	0.14	+2.0
1,081,639	-		SO1043	0.14	-1.6
1,081,639	-		SO1043	0.14	-1.0
1,081,647	-		SO1043	0.15	-1.3
1,081,647	-		SO1043	0.15	-1.1
1,081,651	+		SO1043	0.15	+2.4
1,081,696	-		SO1043	0.22	-0.5
1,081,701	-		SO1043	0.23	-1.0
1,081,728	-		SO1043	0.27	-0.4
1,081,815	+		SO1043	0.39	-1.1
1,081,825	+		SO1043	0.41	-0.9
1,081,825	+		SO1043	0.41	-1.7
1,081,827	-		SO1043	0.41	+0.0
1,081,833	-		SO1043	0.42	-2.0
1,081,833	-		SO1043	0.42	+0.7
1,081,833	-		SO1043	0.42	-1.4
1,081,855	-		SO1043	0.45	-0.9
1,081,918	-		SO1043	0.54	-0.6
1,081,999	+		SO1043	0.66	+0.5
1,082,090	+		SO1043	0.80	-2.2
1,082,090	+		SO1043	0.80	-1.0
1,082,098	-		SO1043	0.81	+0.2
1,082,098	-		SO1043	0.81	-2.1
1,082,136	-		SO1043	0.86	+1.4
1,082,266	-				-0.3
1,082,314	-		SO1044	0.11	-0.2