Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09020

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c09010 and PGA1_c09020 are separated by 262 nucleotidesPGA1_c09020 and PGA1_c09030 are separated by 261 nucleotides PGA1_c09010: PGA1_c09010 - RNA polymerase sigma-32 factor RpoH, at 927,846 to 928,742 _c09010 PGA1_c09020: PGA1_c09020 - putative methyl-accepting chemotaxis protein, at 929,005 to 930,939 _c09020 PGA1_c09030: PGA1_c09030 - phosphomethylpyrimidine kinase ThiD, at 931,201 to 931,998 _c09030 Position (kb) 929 930 931Strain fitness (log2 ratio) -2 -1 0 1at 928.753 kb on - strandat 928.845 kb on + strandat 928.846 kb on + strandat 928.846 kb on + strandat 928.846 kb on + strandat 928.846 kb on + strandat 928.846 kb on + strandat 928.846 kb on + strandat 928.846 kb on + strandat 928.846 kb on + strandat 928.846 kb on + strandat 928.846 kb on + strandat 928.846 kb on + strandat 928.854 kb on - strandat 928.854 kb on - strandat 928.854 kb on - strandat 928.854 kb on - strandat 928.854 kb on - strandat 928.854 kb on - strandat 928.854 kb on - strandat 928.854 kb on - strandat 928.854 kb on - strandat 928.880 kb on - strandat 928.880 kb on - strandat 928.885 kb on + strandat 929.037 kb on + strandat 929.115 kb on + strandat 929.123 kb on - strandat 929.132 kb on + strandat 929.237 kb on + strand, within PGA1_c09020at 929.367 kb on + strand, within PGA1_c09020at 929.397 kb on + strand, within PGA1_c09020at 929.455 kb on + strand, within PGA1_c09020at 929.458 kb on - strand, within PGA1_c09020at 929.473 kb on - strand, within PGA1_c09020at 929.495 kb on + strand, within PGA1_c09020at 929.556 kb on + strand, within PGA1_c09020at 929.564 kb on - strand, within PGA1_c09020at 929.588 kb on + strand, within PGA1_c09020at 929.596 kb on - strand, within PGA1_c09020at 929.601 kb on - strand, within PGA1_c09020at 929.608 kb on + strand, within PGA1_c09020at 929.642 kb on + strand, within PGA1_c09020at 929.642 kb on + strand, within PGA1_c09020at 929.642 kb on + strand, within PGA1_c09020at 929.642 kb on + strand, within PGA1_c09020at 929.650 kb on - strand, within PGA1_c09020at 929.692 kb on - strand, within PGA1_c09020at 929.695 kb on + strand, within PGA1_c09020at 929.728 kb on - strand, within PGA1_c09020at 929.759 kb on + strand, within PGA1_c09020at 929.761 kb on + strand, within PGA1_c09020at 929.799 kb on + strand, within PGA1_c09020at 929.815 kb on - strand, within PGA1_c09020at 929.815 kb on - strand, within PGA1_c09020at 929.833 kb on - strand, within PGA1_c09020at 929.834 kb on + strand, within PGA1_c09020at 929.834 kb on + strand, within PGA1_c09020at 929.866 kb on - strand, within PGA1_c09020at 929.877 kb on + strand, within PGA1_c09020at 929.895 kb on - strand, within PGA1_c09020at 929.895 kb on - strand, within PGA1_c09020at 929.930 kb on - strand, within PGA1_c09020at 930.001 kb on + strand, within PGA1_c09020at 930.001 kb on + strand, within PGA1_c09020at 930.001 kb on + strand, within PGA1_c09020at 930.091 kb on - strand, within PGA1_c09020at 930.257 kb on + strand, within PGA1_c09020at 930.272 kb on + strand, within PGA1_c09020at 930.589 kb on - strand, within PGA1_c09020at 930.980 kb on + strandat 930.980 kb on + strandat 930.988 kb on - strandat 930.988 kb on - strandat 931.018 kb on - strandat 931.064 kb on + strandat 931.069 kb on + strandat 931.077 kb on - strandat 931.103 kb on + strandat 931.130 kb on - strandat 931.199 kb on + strandat 931.199 kb on + strandat 931.255 kb on + strandat 931.255 kb on + strandat 931.316 kb on - strand, within PGA1_c09030at 931.336 kb on + strand, within PGA1_c09030at 931.414 kb on - strand, within PGA1_c09030at 931.418 kb on + strand, within PGA1_c09030at 931.426 kb on - strand, within PGA1_c09030at 931.426 kb on - strand, within PGA1_c09030at 931.480 kb on + strand, within PGA1_c09030at 931.490 kb on + strand, within PGA1_c09030at 931.490 kb on + strand, within PGA1_c09030at 931.613 kb on - strand, within PGA1_c09030at 931.667 kb on - strand, within PGA1_c09030at 931.848 kb on - strand, within PGA1_c09030at 931.880 kb on + strand, within PGA1_c09030at 931.922 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
928,753 - -1.0
928,845 + -1.0
928,846 + +0.3
928,846 + -0.7
928,846 + -2.5
928,846 + +0.4
928,846 + +0.8
928,846 + -0.4
928,846 + +1.1
928,846 + -1.8
928,846 + -1.5
928,846 + +0.3
928,846 + +0.1
928,854 - -0.2
928,854 - +0.6
928,854 - -1.1
928,854 - -0.3
928,854 - +1.1
928,854 - -0.3
928,854 - -0.0
928,854 - -0.1
928,854 - -1.3
928,880 - -1.1
928,880 - +0.9
928,885 + +1.0
929,037 + +0.4
929,115 + +0.8
929,123 - +0.7
929,132 + -0.2
929,237 + PGA1_c09020 0.12 -0.3
929,367 + PGA1_c09020 0.19 -1.5
929,397 + PGA1_c09020 0.20 -1.5
929,455 + PGA1_c09020 0.23 +0.3
929,458 - PGA1_c09020 0.23 -0.2
929,473 - PGA1_c09020 0.24 -0.3
929,495 + PGA1_c09020 0.25 -1.6
929,556 + PGA1_c09020 0.28 -0.2
929,564 - PGA1_c09020 0.29 +1.0
929,588 + PGA1_c09020 0.30 -0.1
929,596 - PGA1_c09020 0.31 -1.7
929,601 - PGA1_c09020 0.31 -0.0
929,608 + PGA1_c09020 0.31 -0.4
929,642 + PGA1_c09020 0.33 -0.5
929,642 + PGA1_c09020 0.33 -0.1
929,642 + PGA1_c09020 0.33 -0.3
929,642 + PGA1_c09020 0.33 -1.4
929,650 - PGA1_c09020 0.33 -0.7
929,692 - PGA1_c09020 0.36 -1.1
929,695 + PGA1_c09020 0.36 -0.5
929,728 - PGA1_c09020 0.37 -0.8
929,759 + PGA1_c09020 0.39 -0.4
929,761 + PGA1_c09020 0.39 -0.0
929,799 + PGA1_c09020 0.41 +0.4
929,815 - PGA1_c09020 0.42 +0.7
929,815 - PGA1_c09020 0.42 -0.8
929,833 - PGA1_c09020 0.43 -0.0
929,834 + PGA1_c09020 0.43 -0.3
929,834 + PGA1_c09020 0.43 +0.6
929,866 - PGA1_c09020 0.44 +0.2
929,877 + PGA1_c09020 0.45 +0.0
929,895 - PGA1_c09020 0.46 +0.4
929,895 - PGA1_c09020 0.46 +0.2
929,930 - PGA1_c09020 0.48 -0.6
930,001 + PGA1_c09020 0.51 -0.6
930,001 + PGA1_c09020 0.51 -0.2
930,001 + PGA1_c09020 0.51 +0.5
930,091 - PGA1_c09020 0.56 -1.8
930,257 + PGA1_c09020 0.65 -0.6
930,272 + PGA1_c09020 0.65 -1.4
930,589 - PGA1_c09020 0.82 +0.0
930,980 + +0.7
930,980 + -0.6
930,988 - +0.7
930,988 - -0.1
931,018 - -0.8
931,064 + -0.4
931,069 + -0.3
931,077 - -0.5
931,103 + -2.6
931,130 - -0.3
931,199 + -0.7
931,199 + +0.9
931,255 + -0.4
931,255 + -0.2
931,316 - PGA1_c09030 0.14 +0.9
931,336 + PGA1_c09030 0.17 -0.7
931,414 - PGA1_c09030 0.27 -0.5
931,418 + PGA1_c09030 0.27 +0.7
931,426 - PGA1_c09030 0.28 +0.6
931,426 - PGA1_c09030 0.28 -0.0
931,480 + PGA1_c09030 0.35 +0.1
931,490 + PGA1_c09030 0.36 +0.3
931,490 + PGA1_c09030 0.36 -0.6
931,613 - PGA1_c09030 0.52 -0.3
931,667 - PGA1_c09030 0.58 -0.8
931,848 - PGA1_c09030 0.81 +0.6
931,880 + PGA1_c09030 0.85 +0.8
931,922 - -0.7

Or see this region's nucleotide sequence