Strain Fitness in Shewanella oneidensis MR-1 around SO4317

Experiment: L-Alanine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Alanine (N)
4,494,164	+		SO4316	0.48	-0.6
4,494,177	+		SO4316	0.49	-1.0
4,494,185	-		SO4316	0.50	-1.3
4,494,185	-		SO4316	0.50	-0.4
4,494,190	-		SO4316	0.50	-0.7
4,494,210	-		SO4316	0.52	-0.2
4,494,292	+		SO4316	0.59	+0.1
4,494,292	-		SO4316	0.59	-1.4
4,494,336	+		SO4316	0.63	-1.7
4,494,344	-		SO4316	0.63	-1.3
4,494,374	-		SO4316	0.66	-0.8
4,494,410	+		SO4316	0.69	-1.5
4,494,418	-		SO4316	0.70	-0.7
4,494,625	+		SO4316	0.88	+0.0
4,494,663	+				-0.7
4,494,728	+				-0.4
4,494,737	+				-2.0
4,494,808	+				+0.2
4,494,808	+				+0.4
4,494,808	+				-1.4
4,494,816	-				+0.3
4,494,816	-				+2.0
4,494,816	-				+1.0
4,495,119	+				+0.4
4,495,128	-				+0.5
4,495,225	+				+0.0
4,495,233	-				-0.2
4,495,272	+				+3.0
4,495,431	+				+0.4
4,495,431	+				+0.4
4,495,500	+				+0.7
4,495,504	+				+1.8
4,495,523	-				+0.6
4,495,543	+				+0.7
4,495,566	-				+1.6
4,495,572	+				+1.2
4,495,578	-				+1.0
4,495,580	-				+1.0
4,495,637	-				+1.9
4,495,643	+				-0.9
4,495,643	+				-1.8
4,495,645	+				-0.1
4,495,654	-				+0.7
4,495,743	+				+0.6
4,495,813	+				-2.0
4,496,085	-		SO4317	0.11	+1.3
4,496,162	-		SO4317	0.12	+0.9
4,496,168	-		SO4317	0.12	+0.9
4,496,243	-		SO4317	0.13	+0.2
4,496,243	-		SO4317	0.13	+0.4
4,496,335	+		SO4317	0.14	+1.8
4,496,335	+		SO4317	0.14	+0.8
4,496,343	-		SO4317	0.14	+0.5
4,496,343	-		SO4317	0.14	-0.4
4,496,552	-		SO4317	0.17	+1.1
4,496,584	+		SO4317	0.17	+0.6
4,496,636	-		SO4317	0.18	+0.8
4,496,753	-		SO4317	0.19	-1.0
4,496,826	+		SO4317	0.20	+1.1
4,496,826	+		SO4317	0.20	+1.7
4,496,826	+		SO4317	0.20	+0.1
4,496,826	+		SO4317	0.20	+0.1
4,496,924	-		SO4317	0.21	+1.7
4,496,924	-		SO4317	0.21	+1.2
4,497,068	-		SO4317	0.23	+0.8
4,497,109	-		SO4317	0.24	+1.0
4,497,326	+		SO4317	0.26	+0.1
4,497,349	-		SO4317	0.26	+0.1
4,497,349	-		SO4317	0.26	+1.1
4,497,349	-		SO4317	0.26	-0.0
4,497,509	-		SO4317	0.28	-0.3
4,497,658	+		SO4317	0.30	+1.7
4,497,658	+		SO4317	0.30	+1.0
4,497,676	-		SO4317	0.30	+0.2
4,497,995	+		SO4317	0.34	+2.4
4,497,995	+		SO4317	0.34	+1.4
4,498,019	+		SO4317	0.35	+0.9
4,498,101	+		SO4317	0.36	+0.6
4,498,143	-		SO4317	0.36	+0.6
4,499,293	+		SO4317	0.50	+1.2
4,499,296	-		SO4317	0.50	+1.0
4,499,387	-		SO4317	0.51	+1.7
4,499,407	-		SO4317	0.51	+0.1
4,499,414	+		SO4317	0.51	+1.7
4,499,414	+		SO4317	0.51	+0.0
4,499,414	+		SO4317	0.51	+1.4
4,499,422	-		SO4317	0.51	+1.4
4,499,422	-		SO4317	0.51	+2.2
4,499,591	-		SO4317	0.53	+1.6
4,499,661	+		SO4317	0.54	+0.1
4,499,718	+		SO4317	0.55	+0.7
4,499,783	-		SO4317	0.56	+0.4
4,499,818	-		SO4317	0.56	-0.1
4,499,836	-		SO4317	0.56	+1.2
4,499,836	-		SO4317	0.56	+0.6
4,499,904	-		SO4317	0.57	+1.2
4,499,944	+		SO4317	0.58	+1.4
4,499,944	+		SO4317	0.58	+1.0
4,499,952	-		SO4317	0.58	+1.0
4,500,013	+		SO4317	0.59	+1.5
4,500,064	-		SO4317	0.59	+0.3
4,500,066	-		SO4317	0.59	+0.5
4,500,130	+		SO4317	0.60	+0.0
4,500,130	+		SO4317	0.60	+1.9
4,500,130	+		SO4317	0.60	+0.9
4,500,151	+		SO4317	0.60	+2.2
4,500,151	+		SO4317	0.60	+2.2
4,500,151	+		SO4317	0.60	+1.6
4,500,151	+		SO4317	0.60	+0.9
4,500,151	+		SO4317	0.60	+1.0
4,500,151	+		SO4317	0.60	+1.1
4,500,151	+		SO4317	0.60	+3.2
4,500,159	-		SO4317	0.60	-1.0
4,500,159	-		SO4317	0.60	+0.9
4,500,159	-		SO4317	0.60	+1.7
4,500,159	-		SO4317	0.60	+0.8
4,500,159	-		SO4317	0.60	+1.3
4,500,159	-		SO4317	0.60	+1.3
4,500,199	+		SO4317	0.61	+0.8
4,500,204	+		SO4317	0.61	+1.1
4,500,205	+		SO4317	0.61	+0.8
4,500,260	-		SO4317	0.61	-0.3
4,500,275	+		SO4317	0.62	-0.1
4,500,284	+		SO4317	0.62	+1.9
4,500,288	-		SO4317	0.62	+1.1
4,500,393	-		SO4317	0.63	+0.5
4,500,403	-		SO4317	0.63	+0.7
4,500,452	-		SO4317	0.64	+1.4
4,500,479	+		SO4317	0.64	+1.9
4,500,505	+		SO4317	0.64	+1.7
4,500,513	-		SO4317	0.65	+1.4
4,500,597	-		SO4317	0.66	+0.6
4,500,603	+		SO4317	0.66	+2.1
4,500,609	+		SO4317	0.66	+1.7
4,500,611	-		SO4317	0.66	+1.6
4,500,611	-		SO4317	0.66	-0.4
4,500,616	-		SO4317	0.66	+2.1
4,500,631	+		SO4317	0.66	+1.9
4,500,639	-		SO4317	0.66	+2.2
4,500,705	-		SO4317	0.67	+1.2
4,500,726	+		SO4317	0.67	+0.5
4,500,743	+		SO4317	0.67	+1.9
4,500,751	-		SO4317	0.67	+0.6
4,500,762	+		SO4317	0.68	+1.8
4,500,830	+		SO4317	0.68	+2.7
4,500,914	+		SO4317	0.69	+1.0
4,500,935	+		SO4317	0.70	+0.4
4,500,975	-		SO4317	0.70	+0.7
4,500,975	-		SO4317	0.70	+1.2
4,500,975	-		SO4317	0.70	-0.4
4,500,975	-		SO4317	0.70	+2.1
4,500,975	-		SO4317	0.70	+1.6
4,500,990	+		SO4317	0.70	+1.9
4,501,036	+		SO4317	0.71	+1.7
4,501,060	-		SO4317	0.71	+1.2
4,501,160	+		SO4317	0.72	+2.2
4,501,168	-		SO4317	0.72	+0.9
4,501,176	-		SO4317	0.73	+1.5
4,501,181	-		SO4317	0.73	+1.1
4,501,205	+		SO4317	0.73	+0.9
4,501,224	-		SO4317	0.73	+1.9
4,501,254	-		SO4317	0.73	+0.6
4,501,272	+		SO4317	0.74	+1.8
4,501,381	+		SO4317	0.75	+0.9
4,501,439	-		SO4317	0.76	+1.6
4,501,481	+		SO4317	0.76	+1.3
4,501,695	-		SO4317	0.79	+1.5
4,501,695	-		SO4317	0.79	+0.9
4,501,695	-		SO4317	0.79	+1.5
4,501,698	+		SO4317	0.79	+1.7
4,501,705	+		SO4317	0.79	+0.8
4,501,705	+		SO4317	0.79	+1.5
4,501,724	-		SO4317	0.79	+1.1
4,501,750	-		SO4317	0.79	-0.2
4,501,757	-		SO4317	0.80	+0.9
4,501,783	-		SO4317	0.80	+1.2
4,501,788	-		SO4317	0.80	+0.5
4,501,888	-		SO4317	0.81	+0.3
4,501,888	-		SO4317	0.81	+0.0
4,501,893	+		SO4317	0.81	+2.6
4,501,983	-		SO4317	0.82	+1.6
4,501,984	+		SO4317	0.82	+1.5
4,501,984	+		SO4317	0.82	+1.0
4,501,992	-		SO4317	0.82	+1.0
4,501,992	-		SO4317	0.82	+2.4
4,501,996	+		SO4317	0.82	+0.9
4,502,135	-		SO4317	0.84	+0.7
4,502,135	-		SO4317	0.84	-0.1
4,502,144	+		SO4317	0.84	+1.5
4,502,210	+		SO4317	0.85	+1.1
4,502,262	+		SO4317	0.86	+2.4
4,502,268	-		SO4317	0.86	+1.5
4,502,345	-		SO4317	0.87	-0.9
4,502,345	-		SO4317	0.87	+1.4
4,502,411	+		SO4317	0.87	+2.9
4,502,411	+		SO4317	0.87	+1.6
4,502,448	+		SO4317	0.88	+2.3
4,502,483	-		SO4317	0.88	+1.3
4,502,487	+		SO4317	0.88	+1.3
4,502,492	+		SO4317	0.88	+2.5
4,502,495	-		SO4317	0.88	+0.6
4,502,505	-		SO4317	0.89	+0.6
4,502,517	+		SO4317	0.89	+0.8
4,502,538	-		SO4317	0.89	+1.6
4,502,639	+				+1.3
4,502,639	+				+1.1
4,502,647	-				+1.9
4,502,774	+				+0.7
4,502,849	+				+1.4
4,502,862	-				+1.8
4,502,879	+				+1.7
4,502,921	+				+2.3
4,502,921	+				+1.8
4,502,931	+				+1.4
4,502,939	-				+1.0
4,503,061	-				+1.3
4,503,123	-				+2.1
4,503,141	-				+1.2
4,503,141	-				-0.4
4,503,198	+				+0.7
4,503,377	-				+0.9
4,503,377	-				+1.1
4,503,386	-				+0.6
4,503,398	+				+1.4
4,503,398	+				+0.6
4,503,406	-				+1.3
4,503,406	-				+1.4
4,503,406	-				-0.4
4,503,406	-				+0.3
4,503,461	-				+1.3
4,503,555	+				+2.2
4,503,646	+				+2.3
4,503,711	+				+1.5
4,503,716	+				+2.0
4,503,726	+				+2.3
4,503,746	-				+2.3
4,503,775	-				+2.8
4,503,937	+	rtxB	SO4318	0.17	+2.0
4,503,945	-	rtxB	SO4318	0.17	+2.2
4,503,945	-	rtxB	SO4318	0.17	+1.5
4,503,945	-	rtxB	SO4318	0.17	+3.9
4,503,993	-	rtxB	SO4318	0.20	+1.7
4,504,031	+	rtxB	SO4318	0.21	+2.0
4,504,049	+	rtxB	SO4318	0.22	+1.4
4,504,057	+	rtxB	SO4318	0.23	+1.6
4,504,057	+	rtxB	SO4318	0.23	+2.1
4,504,057	+	rtxB	SO4318	0.23	+2.3
4,504,057	+	rtxB	SO4318	0.23	+2.7
4,504,057	+	rtxB	SO4318	0.23	+2.4
4,504,058	-	rtxB	SO4318	0.23	+2.7
4,504,065	-	rtxB	SO4318	0.23	+1.6
4,504,189	+	rtxB	SO4318	0.29	+0.0
4,504,199	-	rtxB	SO4318	0.29	+2.3
4,504,379	-	rtxB	SO4318	0.37	+1.8
4,504,407	+	rtxB	SO4318	0.39	+2.7
4,504,440	+	rtxB	SO4318	0.40	+1.9