Strain Fitness in Shewanella oneidensis MR-1 around SO2635

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttrmU and SO2634 are separated by 3 nucleotidesSO2634 and purB are separated by 29 nucleotidespurB and SO2636 are separated by 126 nucleotides SO2633: trmU - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file), at 2,768,717 to 2,769,835 trmU SO2634: SO2634 - conserved hypothetical protein (NCBI ptt file), at 2,769,839 to 2,770,456 SO2634 SO2635: purB - adenylosuccinate lyase (NCBI ptt file), at 2,770,486 to 2,771,856 purB SO2636: SO2636 - conserved hypothetical protein (NCBI ptt file), at 2,771,983 to 2,773,125 SO2636 Position (kb) 2770 2771 2772Strain fitness (log2 ratio) -1 0 1at 2770.021 kb on + strand, within SO2634at 2770.364 kb on + strand, within SO2634at 2770.371 kb on + strand, within SO2634at 2770.421 kb on + strandat 2771.948 kb on - strandat 2772.370 kb on - strand, within SO2636at 2772.412 kb on + strand, within SO2636at 2772.430 kb on - strand, within SO2636at 2772.727 kb on - strand, within SO2636at 2772.777 kb on + strand, within SO2636

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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2,770,021 + SO2634 0.29 +0.3
2,770,364 + SO2634 0.85 +1.0
2,770,371 + SO2634 0.86 -0.2
2,770,421 + -1.3
2,771,948 - -0.4
2,772,370 - SO2636 0.34 -0.4
2,772,412 + SO2636 0.38 +0.6
2,772,430 - SO2636 0.39 +0.6
2,772,727 - SO2636 0.65 -0.0
2,772,777 + SO2636 0.69 +0.6

Or see this region's nucleotide sequence