Strain Fitness in Shewanella oneidensis MR-1 around SO2274

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2272 and ndk are separated by 635 nucleotidesndk and SO2275 are separated by 164 nucleotidesSO2275 and SO2276 overlap by 11 nucleotides SO2272: SO2272 - ISSod4, transposase (NCBI ptt file), at 2,385,138 to 2,386,340 SO2272 SO2274: ndk - nucleoside diphosphate kinase (NCBI ptt file), at 2,386,976 to 2,387,407 ndk SO2275: SO2275 - ISSod10, transposase OrfA (NCBI ptt file), at 2,387,572 to 2,388,051 SO2275 SO2276: SO2276 - ISSod10, transposase OrfB (NCBI ptt file), at 2,388,041 to 2,388,598 SO2276 Position (kb) 2386 2387 2388Strain fitness (log2 ratio) -1 0 1 2at 2386.395 kb on + strandat 2386.600 kb on + strandat 2386.632 kb on + strandat 2386.636 kb on - strandat 2386.638 kb on + strandat 2386.646 kb on - strandat 2386.779 kb on - strandat 2386.895 kb on + strandat 2387.389 kb on + strandat 2387.431 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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2,386,395 + +0.1
2,386,600 + +0.0
2,386,632 + +1.5
2,386,636 - +1.2
2,386,638 + +0.5
2,386,646 - -0.5
2,386,779 - -0.3
2,386,895 + +0.6
2,387,389 + +2.4
2,387,431 - -0.5

Or see this region's nucleotide sequence