Strain Fitness in Shewanella oneidensis MR-1 around SO2189

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2187 and SO_2188 are separated by 39 nucleotidesSO_2188 and SO2189 are separated by 319 nucleotidesSO2189 and creA are separated by 17 nucleotidescreA and metC are separated by 107 nucleotides SO2187: SO2187 - ISSod11, transposase (NCBI ptt file), at 2,298,229 to 2,299,185 SO2187 SO_2188: SO_2188 - no description, at 2,299,225 to 2,299,716 _2188 SO2189: SO2189 - hypothetical heat shock protein (NCBI ptt file), at 2,300,036 to 2,301,490 SO2189 SO2190: creA - creA protein (NCBI ptt file), at 2,301,508 to 2,302,005 creA SO2191: metC - cystathionine beta-lyase (NCBI ptt file), at 2,302,113 to 2,303,312 metC Position (kb) 2300 2301 2302Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2299.716 kb on + strandat 2299.726 kb on + strandat 2299.758 kb on - strandat 2299.855 kb on + strandat 2299.984 kb on + strandat 2299.984 kb on + strandat 2299.992 kb on - strandat 2300.012 kb on + strandat 2300.082 kb on - strandat 2300.145 kb on - strandat 2300.159 kb on - strandat 2300.339 kb on - strand, within SO2189at 2300.393 kb on + strand, within SO2189at 2300.401 kb on - strand, within SO2189at 2300.419 kb on + strand, within SO2189at 2300.459 kb on - strand, within SO2189at 2300.548 kb on - strand, within SO2189at 2300.594 kb on + strand, within SO2189at 2300.653 kb on + strand, within SO2189at 2300.796 kb on + strand, within SO2189at 2300.796 kb on + strand, within SO2189at 2300.804 kb on - strand, within SO2189at 2300.804 kb on - strand, within SO2189at 2300.804 kb on - strand, within SO2189at 2300.831 kb on + strand, within SO2189at 2300.909 kb on + strand, within SO2189at 2301.064 kb on + strand, within SO2189at 2301.224 kb on + strand, within SO2189at 2301.592 kb on + strand, within creAat 2302.069 kb on + strandat 2302.081 kb on - strandat 2302.103 kb on + strandat 2302.229 kb on + strandat 2302.386 kb on - strand, within metCat 2302.463 kb on + strand, within metC

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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2,299,716 + -1.1
2,299,726 + +0.7
2,299,758 - +0.4
2,299,855 + -1.4
2,299,984 + -0.2
2,299,984 + -1.7
2,299,992 - +0.5
2,300,012 + +1.7
2,300,082 - +0.8
2,300,145 - -0.0
2,300,159 - -0.6
2,300,339 - SO2189 0.21 -0.1
2,300,393 + SO2189 0.25 +0.5
2,300,401 - SO2189 0.25 +0.4
2,300,419 + SO2189 0.26 +2.1
2,300,459 - SO2189 0.29 +1.3
2,300,548 - SO2189 0.35 +0.4
2,300,594 + SO2189 0.38 -0.0
2,300,653 + SO2189 0.42 -0.2
2,300,796 + SO2189 0.52 +3.3
2,300,796 + SO2189 0.52 +0.4
2,300,804 - SO2189 0.53 +0.4
2,300,804 - SO2189 0.53 -0.5
2,300,804 - SO2189 0.53 +0.2
2,300,831 + SO2189 0.55 +0.3
2,300,909 + SO2189 0.60 +0.1
2,301,064 + SO2189 0.71 -0.0
2,301,224 + SO2189 0.82 +0.5
2,301,592 + creA SO2190 0.17 -0.5
2,302,069 + -0.1
2,302,081 - +0.1
2,302,103 + +0.2
2,302,229 + -2.9
2,302,386 - metC SO2191 0.23 -2.2
2,302,463 + metC SO2191 0.29 -2.4

Or see this region's nucleotide sequence