Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO1816 and SO1817 are separated by 9 nucleotides SO1817 and SO1818 overlap by 10 nucleotides SO1818 and dinG are separated by 9 nucleotides
SO1816: SO1816 - conserved hypothetical protein (NCBI ptt file), at 1,905,664 to 1,906,344
SO1816
SO1817: SO1817 - primosomal replication protein n'', putative (NCBI ptt file), at 1,906,354 to 1,907,022
SO1817
SO1818: SO1818 - conserved hypothetical protein (NCBI ptt file), at 1,907,013 to 1,907,786
SO1818
SO1819: dinG - ATP-dependent helicase DinG (NCBI ptt file), at 1,907,796 to 1,909,868
dinG
Position (kb) 1907
1908 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1906.085 kb on - strand, within SO1816 at 1906.278 kb on - strand at 1906.374 kb on - strand at 1906.557 kb on - strand, within SO1817 at 1906.932 kb on - strand, within SO1817 at 1907.001 kb on + strand at 1907.076 kb on - strand at 1907.164 kb on - strand, within SO1818 at 1907.185 kb on - strand, within SO1818 at 1907.230 kb on + strand, within SO1818 at 1907.238 kb on - strand, within SO1818 at 1907.422 kb on - strand, within SO1818 at 1907.427 kb on - strand, within SO1818 at 1907.480 kb on + strand, within SO1818 at 1907.509 kb on - strand, within SO1818 at 1907.511 kb on + strand, within SO1818 at 1907.519 kb on - strand, within SO1818 at 1907.519 kb on - strand, within SO1818 at 1907.519 kb on - strand, within SO1818 at 1907.574 kb on + strand, within SO1818 at 1907.667 kb on + strand, within SO1818 at 1907.672 kb on + strand, within SO1818 at 1907.818 kb on - strand at 1907.910 kb on - strand at 1908.009 kb on + strand, within dinG at 1908.017 kb on - strand, within dinG at 1908.017 kb on - strand, within dinG at 1908.017 kb on - strand, within dinG at 1908.062 kb on + strand, within dinG at 1908.087 kb on + strand, within dinG at 1908.087 kb on + strand, within dinG at 1908.087 kb on + strand, within dinG at 1908.095 kb on - strand, within dinG at 1908.269 kb on + strand, within dinG at 1908.269 kb on + strand, within dinG at 1908.269 kb on + strand, within dinG at 1908.269 kb on + strand, within dinG at 1908.269 kb on + strand, within dinG at 1908.269 kb on + strand, within dinG at 1908.269 kb on + strand, within dinG at 1908.269 kb on + strand, within dinG at 1908.277 kb on - strand, within dinG at 1908.277 kb on - strand, within dinG at 1908.277 kb on - strand, within dinG at 1908.277 kb on - strand, within dinG at 1908.277 kb on - strand, within dinG at 1908.277 kb on - strand, within dinG at 1908.277 kb on - strand, within dinG at 1908.277 kb on - strand, within dinG at 1908.415 kb on + strand, within dinG at 1908.488 kb on + strand, within dinG at 1908.496 kb on - strand, within dinG at 1908.496 kb on - strand, within dinG at 1908.501 kb on - strand, within dinG at 1908.639 kb on - strand, within dinG at 1908.760 kb on - strand, within dinG
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 1,906,085 - SO1816 0.62 -0.1 1,906,278 - -0.3 1,906,374 - -0.5 1,906,557 - SO1817 0.30 -0.4 1,906,932 - SO1817 0.86 -1.6 1,907,001 + -0.1 1,907,076 - +2.0 1,907,164 - SO1818 0.20 +1.8 1,907,185 - SO1818 0.22 +0.9 1,907,230 + SO1818 0.28 +1.2 1,907,238 - SO1818 0.29 +0.9 1,907,422 - SO1818 0.53 +1.5 1,907,427 - SO1818 0.53 +0.8 1,907,480 + SO1818 0.60 +0.7 1,907,509 - SO1818 0.64 +1.4 1,907,511 + SO1818 0.64 +0.6 1,907,519 - SO1818 0.65 +1.1 1,907,519 - SO1818 0.65 +1.4 1,907,519 - SO1818 0.65 +0.4 1,907,574 + SO1818 0.72 +1.2 1,907,667 + SO1818 0.84 +1.4 1,907,672 + SO1818 0.85 -0.0 1,907,818 - -0.1 1,907,910 - -0.7 1,908,009 + dinG SO1819 0.10 +2.8 1,908,017 - dinG SO1819 0.11 -1.4 1,908,017 - dinG SO1819 0.11 -4.5 1,908,017 - dinG SO1819 0.11 -0.7 1,908,062 + dinG SO1819 0.13 +2.2 1,908,087 + dinG SO1819 0.14 +2.6 1,908,087 + dinG SO1819 0.14 +3.2 1,908,087 + dinG SO1819 0.14 +3.9 1,908,095 - dinG SO1819 0.14 +2.5 1,908,269 + dinG SO1819 0.23 +3.2 1,908,269 + dinG SO1819 0.23 +4.0 1,908,269 + dinG SO1819 0.23 +3.4 1,908,269 + dinG SO1819 0.23 +2.4 1,908,269 + dinG SO1819 0.23 +2.4 1,908,269 + dinG SO1819 0.23 +2.1 1,908,269 + dinG SO1819 0.23 +3.1 1,908,269 + dinG SO1819 0.23 +1.9 1,908,277 - dinG SO1819 0.23 +1.2 1,908,277 - dinG SO1819 0.23 +2.1 1,908,277 - dinG SO1819 0.23 +2.4 1,908,277 - dinG SO1819 0.23 +1.2 1,908,277 - dinG SO1819 0.23 +2.7 1,908,277 - dinG SO1819 0.23 +2.1 1,908,277 - dinG SO1819 0.23 +2.2 1,908,277 - dinG SO1819 0.23 +0.7 1,908,415 + dinG SO1819 0.30 +2.2 1,908,488 + dinG SO1819 0.33 +3.5 1,908,496 - dinG SO1819 0.34 +1.3 1,908,496 - dinG SO1819 0.34 +2.2 1,908,501 - dinG SO1819 0.34 +2.8 1,908,639 - dinG SO1819 0.41 +1.1 1,908,760 - dinG SO1819 0.47 +2.0
Or see this region's nucleotide sequence