Strain Fitness in Shewanella oneidensis MR-1 around SO1631

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttsf and pyrH are separated by 70 nucleotidespyrH and frr are separated by 30 nucleotidesfrr and uppS are separated by 82 nucleotides SO1630: tsf - translation elongation factor Ts (NCBI ptt file), at 1,712,262 to 1,713,113 tsf SO1631: pyrH - uridylate kinase (NCBI ptt file), at 1,713,184 to 1,713,912 pyrH SO1632: frr - ribosome recycling factor (NCBI ptt file), at 1,713,943 to 1,714,500 frr SO1633: uppS - undecaprenyl diphosphate synthase (NCBI ptt file), at 1,714,583 to 1,715,410 uppS Position (kb) 1713 1714Strain fitness (log2 ratio) -2 -1 0 1at 1714.502 kb on - strandat 1714.523 kb on - strandat 1714.538 kb on + strandat 1714.541 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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1,714,502 - -0.3
1,714,523 - +0.5
1,714,538 + -0.9
1,714,541 - -2.0

Or see this region's nucleotide sequence