Strain Fitness in Shewanella oneidensis MR-1 around SO0697

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdsbD and cutA overlap by 4 nucleotidescutA and fsxA are separated by 222 nucleotidesfsxA and SO0699 are separated by 166 nucleotides SO0696: dsbD - thiol:disulfide interchange protein DsbD (NCBI ptt file), at 714,174 to 716,006 dsbD SO0697: cutA - periplasmic divalent cation tolerance protein CutA (NCBI ptt file), at 716,003 to 716,326 cutA SO0698: fsxA - fxsA protein (NCBI ptt file), at 716,549 to 717,112 fsxA SO0699: SO0699 - hypothetical protein (NCBI ptt file), at 717,279 to 717,647 SO0699 Position (kb) 716 717Strain fitness (log2 ratio) -2 -1 0 1 2at 715.185 kb on + strand, within dsbDat 715.193 kb on - strand, within dsbDat 715.253 kb on - strand, within dsbDat 715.257 kb on + strand, within dsbDat 715.288 kb on - strand, within dsbDat 715.376 kb on + strand, within dsbDat 715.390 kb on - strand, within dsbDat 715.447 kb on - strand, within dsbDat 715.491 kb on + strand, within dsbDat 715.630 kb on - strand, within dsbDat 715.630 kb on - strand, within dsbDat 715.634 kb on + strand, within dsbDat 715.642 kb on - strand, within dsbDat 715.642 kb on - strand, within dsbDat 715.766 kb on - strand, within dsbDat 715.884 kb on - strandat 715.982 kb on + strandat 715.990 kb on - strandat 716.008 kb on + strandat 716.013 kb on + strandat 716.037 kb on - strand, within cutAat 716.039 kb on + strand, within cutAat 716.122 kb on - strand, within cutAat 716.127 kb on - strand, within cutAat 716.273 kb on + strand, within cutAat 716.326 kb on - strandat 716.326 kb on - strandat 716.328 kb on + strandat 716.331 kb on - strandat 716.467 kb on - strandat 716.603 kb on + strandat 716.643 kb on + strand, within fsxAat 716.643 kb on + strand, within fsxAat 716.643 kb on + strand, within fsxAat 716.650 kb on - strand, within fsxAat 716.662 kb on - strand, within fsxAat 716.662 kb on - strand, within fsxAat 716.669 kb on + strand, within fsxAat 716.687 kb on - strand, within fsxAat 716.779 kb on - strand, within fsxAat 716.935 kb on + strand, within fsxAat 716.939 kb on + strand, within fsxAat 716.947 kb on - strand, within fsxAat 716.981 kb on - strand, within fsxAat 716.998 kb on + strand, within fsxAat 717.011 kb on - strand, within fsxAat 717.014 kb on - strand, within fsxAat 717.020 kb on + strand, within fsxAat 717.099 kb on + strandat 717.100 kb on + strandat 717.107 kb on - strandat 717.127 kb on + strandat 717.188 kb on + strandat 717.309 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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715,185 + dsbD SO0696 0.55 +0.0
715,193 - dsbD SO0696 0.56 -1.8
715,253 - dsbD SO0696 0.59 +1.8
715,257 + dsbD SO0696 0.59 +0.5
715,288 - dsbD SO0696 0.61 +1.4
715,376 + dsbD SO0696 0.66 +1.3
715,390 - dsbD SO0696 0.66 +1.2
715,447 - dsbD SO0696 0.69 +1.2
715,491 + dsbD SO0696 0.72 +0.2
715,630 - dsbD SO0696 0.79 +0.6
715,630 - dsbD SO0696 0.79 +0.4
715,634 + dsbD SO0696 0.80 +0.8
715,642 - dsbD SO0696 0.80 +0.4
715,642 - dsbD SO0696 0.80 -0.3
715,766 - dsbD SO0696 0.87 +0.5
715,884 - +1.6
715,982 + +1.1
715,990 - +0.7
716,008 + +1.7
716,013 + +0.4
716,037 - cutA SO0697 0.10 -1.2
716,039 + cutA SO0697 0.11 +2.7
716,122 - cutA SO0697 0.37 -0.0
716,127 - cutA SO0697 0.38 -0.3
716,273 + cutA SO0697 0.83 +2.2
716,326 - +0.3
716,326 - +0.5
716,328 + +2.3
716,331 - -0.0
716,467 - +1.3
716,603 + -0.8
716,643 + fsxA SO0698 0.17 -0.9
716,643 + fsxA SO0698 0.17 +1.4
716,643 + fsxA SO0698 0.17 +0.8
716,650 - fsxA SO0698 0.18 +0.1
716,662 - fsxA SO0698 0.20 -0.9
716,662 - fsxA SO0698 0.20 +1.8
716,669 + fsxA SO0698 0.21 -0.6
716,687 - fsxA SO0698 0.24 -0.3
716,779 - fsxA SO0698 0.41 +1.3
716,935 + fsxA SO0698 0.68 -1.1
716,939 + fsxA SO0698 0.69 +1.1
716,947 - fsxA SO0698 0.71 +0.2
716,981 - fsxA SO0698 0.77 -0.2
716,998 + fsxA SO0698 0.80 +1.0
717,011 - fsxA SO0698 0.82 +2.3
717,014 - fsxA SO0698 0.82 +0.3
717,020 + fsxA SO0698 0.84 -0.3
717,099 + +0.1
717,100 + +0.3
717,107 - +0.7
717,127 + -0.0
717,188 + +0.4
717,309 + -1.4

Or see this region's nucleotide sequence