Strain Fitness in Shewanella amazonensis SB2B around Sama_2125

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,569,728	+				+0.4
2,569,728	+				+0.7
2,569,729	-				+0.9
2,569,729	-				-0.3
2,569,752	+				+2.1
2,569,752	+				-2.4
2,569,752	+				+0.3
2,569,753	-				-0.1
2,569,755	-				+0.1
2,569,794	-				+0.5
2,569,794	-				-1.3
2,569,794	-				-0.4
2,569,973	-		Sama_2124	0.18	-1.8
2,569,973	-		Sama_2124	0.18	-0.9
2,569,998	-		Sama_2124	0.21	-0.1
2,570,060	-		Sama_2124	0.28	+0.3
2,570,132	-		Sama_2124	0.36	-0.0
2,570,254	+		Sama_2124	0.50	-1.0
2,570,278	+		Sama_2124	0.52	+0.7
2,570,279	-		Sama_2124	0.52	-2.0
2,570,289	+		Sama_2124	0.53	-0.4
2,570,290	-		Sama_2124	0.54	-0.6
2,570,290	-		Sama_2124	0.54	-0.4
2,570,290	-		Sama_2124	0.54	-0.1
2,570,290	-		Sama_2124	0.54	-0.7
2,570,488	+		Sama_2124	0.76	+0.7
2,570,488	+		Sama_2124	0.76	+1.8
2,570,494	-		Sama_2124	0.77	-1.3
2,570,534	-		Sama_2124	0.81	-0.4
2,570,749	-				+1.7
2,570,812	+		Sama_2125	0.20	-0.9
2,571,017	-		Sama_2125	0.54	-2.0
2,571,052	+		Sama_2125	0.60	-2.3
2,571,053	-		Sama_2125	0.60	+0.3
2,571,053	-		Sama_2125	0.60	-1.4
2,571,128	-		Sama_2125	0.73	-0.5
2,571,155	+		Sama_2125	0.77	-2.0
2,571,270	+				-1.7
2,571,271	-				-0.8
2,571,271	-				+0.0
2,571,271	-				-0.7
2,571,271	-				+1.6
2,571,271	-				+0.9
2,571,271	-				-1.2
2,571,271	-				-1.4
2,571,278	+				+0.3
2,571,279	-				-0.4
2,571,306	+				-0.0
2,571,306	+				-1.2
2,571,307	-				+0.1
2,571,334	-				+0.8
2,571,539	-		Sama_2126	0.32	-0.8
2,571,673	+		Sama_2126	0.49	+1.2
2,571,674	-		Sama_2126	0.49	-0.6
2,571,699	+		Sama_2126	0.52	-1.8
2,571,700	-		Sama_2126	0.52	-1.2
2,571,700	-		Sama_2126	0.52	+0.6
2,571,719	-		Sama_2126	0.54	+0.2
2,571,820	-		Sama_2126	0.67	+0.3
2,571,864	+		Sama_2126	0.73	-0.2
2,571,865	-		Sama_2126	0.73	-0.4
2,571,865	-		Sama_2126	0.73	-0.2
2,571,865	-		Sama_2126	0.73	+1.3
2,571,865	-		Sama_2126	0.73	-1.8
2,571,865	-		Sama_2126	0.73	+0.1
2,571,865	-		Sama_2126	0.73	+0.6
2,571,873	+		Sama_2126	0.74	+0.6
2,571,874	-		Sama_2126	0.74	+0.1
2,571,905	+		Sama_2126	0.78	+0.6
2,571,906	-		Sama_2126	0.78	-0.9
2,571,936	+		Sama_2126	0.82	+0.2
2,571,936	+		Sama_2126	0.82	-0.8
2,571,937	-		Sama_2126	0.82	+0.1
2,571,937	-		Sama_2126	0.82	-2.2
2,572,001	-				-0.7
2,572,080	+				+1.2
2,572,081	-				+0.2
2,572,081	-				+1.2
2,572,081	-				+0.2
2,572,081	-				+0.6
2,572,131	-				-1.4
2,572,139	+				-1.8
2,572,140	-				-0.1
2,572,140	-				-0.8
2,572,140	-				-0.4
2,572,203	-				+0.7
2,572,224	+				+0.5