Strain Fitness in Shewanella amazonensis SB2B around Sama_1617

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,978,503	-		Sama_1616	0.60	-0.7
1,978,503	-		Sama_1616	0.60	-1.1
1,978,522	-		Sama_1616	0.61	-2.3
1,978,572	+		Sama_1616	0.64	-4.8
1,978,572	+		Sama_1616	0.64	-1.1
1,978,572	+		Sama_1616	0.64	-0.5
1,978,604	-		Sama_1616	0.66	-1.9
1,978,738	-		Sama_1616	0.73	-3.4
1,978,753	-		Sama_1616	0.74	-0.4
1,978,790	-		Sama_1616	0.76	-3.7
1,978,800	+		Sama_1616	0.76	-3.3
1,978,963	+		Sama_1616	0.85	-1.1
1,978,964	-		Sama_1616	0.85	-4.3
1,979,002	-		Sama_1616	0.87	-2.1
1,979,002	-		Sama_1616	0.87	-1.1
1,979,004	+		Sama_1616	0.87	-0.5
1,979,004	+		Sama_1616	0.87	-0.6
1,979,047	+		Sama_1616	0.90	-3.2
1,979,047	+		Sama_1616	0.90	-1.9
1,979,048	-		Sama_1616	0.90	-3.3
1,979,048	-		Sama_1616	0.90	-2.1
1,979,048	-		Sama_1616	0.90	-0.5
1,979,069	+				-1.9
1,979,069	+				-4.2
1,979,070	-				+0.1
1,979,130	-				-2.3
1,979,145	-				-2.1
1,979,145	-				-3.4
1,979,153	+				-2.9
1,979,154	-				-2.9
1,979,154	-				-4.5
1,979,262	+				+0.7
1,979,289	-				-1.5
1,979,363	-				-0.8
1,979,373	-				-0.1
1,979,385	+				+0.3
1,979,385	+				+0.5
1,979,385	+				+0.5
1,979,615	+		Sama_1617	0.19	+1.4
1,979,616	-		Sama_1617	0.19	+0.2
1,979,621	+		Sama_1617	0.20	+0.3
1,979,621	+		Sama_1617	0.20	+0.0
1,979,622	-		Sama_1617	0.20	-0.5
1,979,646	-		Sama_1617	0.22	+0.7
1,979,668	-		Sama_1617	0.24	+0.5
1,979,668	-		Sama_1617	0.24	-1.0
1,979,747	+		Sama_1617	0.33	+1.0
1,979,747	+		Sama_1617	0.33	+0.5
1,979,748	-		Sama_1617	0.33	+0.0
1,979,748	-		Sama_1617	0.33	-0.3
1,979,793	-		Sama_1617	0.37	-0.7
1,979,989	-		Sama_1617	0.57	+0.8
1,979,989	-		Sama_1617	0.57	-0.0
1,980,086	+		Sama_1617	0.67	-0.5
1,980,086	+		Sama_1617	0.67	+2.2
1,980,120	+		Sama_1617	0.70	+0.6
1,980,120	+		Sama_1617	0.70	-0.1
1,980,168	+		Sama_1617	0.75	+0.7
1,980,169	-		Sama_1617	0.75	+1.8
1,980,169	-		Sama_1617	0.75	-2.1
1,980,181	-		Sama_1617	0.77	+1.7
1,980,216	+		Sama_1617	0.80	+0.5
1,980,216	+		Sama_1617	0.80	-0.5
1,980,216	+		Sama_1617	0.80	-0.2
1,980,217	-		Sama_1617	0.80	-0.1
1,980,335	+				+0.5
1,980,335	+				-0.9
1,980,339	-				-0.5
1,980,352	-				+1.5
1,980,367	+				+0.2
1,980,371	+				-0.7
1,980,371	+				+0.3
1,980,372	-				-1.1
1,980,372	-				-0.1
1,980,462	-				+0.1
1,980,475	-				+1.0
1,980,475	-				-0.6
1,980,507	+				+0.2
1,980,507	+				+0.7
1,980,522	+				-1.5
1,980,522	+				-0.2
1,980,523	-				+0.1
1,980,523	-				+1.0
1,980,555	+		Sama_1618	0.14	-0.8
1,980,555	+		Sama_1618	0.14	+0.2
1,980,555	+		Sama_1618	0.14	+0.6
1,980,555	+		Sama_1618	0.14	+0.4
1,980,556	-		Sama_1618	0.14	+1.7
1,980,556	-		Sama_1618	0.14	-1.0
1,980,556	-		Sama_1618	0.14	+1.0
1,980,617	+		Sama_1618	0.29	+1.1
1,980,617	+		Sama_1618	0.29	-0.5
1,980,621	+		Sama_1618	0.30	+1.0
1,980,621	+		Sama_1618	0.30	-0.3
1,980,621	+		Sama_1618	0.30	-0.2
1,980,621	+		Sama_1618	0.30	-1.9
1,980,621	+		Sama_1618	0.30	+0.5
1,980,622	-		Sama_1618	0.30	-1.9
1,980,688	+		Sama_1618	0.46	+1.7
1,980,688	+		Sama_1618	0.46	+0.6
1,980,688	+		Sama_1618	0.46	-0.4
1,980,688	+		Sama_1618	0.46	+1.6
1,980,689	-		Sama_1618	0.46	-1.3
1,980,689	-		Sama_1618	0.46	-1.5
1,980,689	-		Sama_1618	0.46	+1.5
1,980,689	-		Sama_1618	0.46	-0.9
1,980,702	-		Sama_1618	0.49	+0.5
1,980,746	+		Sama_1618	0.60	-0.3
1,980,880	+				+0.3
1,980,880	+				+0.1
1,980,880	+				+0.0
1,980,880	+				+0.7
1,980,880	+				-0.4
1,980,881	-				+0.6
1,980,881	-				-1.0
1,980,881	-				+0.2
1,980,882	+				-0.3
1,980,896	-				+0.6
1,980,925	-				-0.7
1,980,986	+				+1.0
1,980,986	+				+0.3
1,980,986	+				-1.9
1,980,987	-				-0.7
1,981,059	+				-0.3
1,981,060	-				+0.5
1,981,060	-				-0.1
1,981,060	-				-0.2
1,981,060	-				+0.1
1,981,063	+				-0.6
1,981,095	-				-1.0
1,981,117	+				+0.2
1,981,117	+				-1.0
1,981,118	-				+0.5