Strain Fitness in Shewanella amazonensis SB2B around Sama_1562

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,901,114	+				-1.8
1,901,191	-				+1.3
1,901,191	-				-2.8
1,901,776	+				+0.2
1,901,792	+				-0.1
1,901,796	+				-1.1
1,901,804	+				+0.4
1,901,805	-				-1.5
1,901,805	-				-0.1
1,901,805	-				-0.6
1,901,805	-				-0.5
1,901,825	-				-1.1
1,901,825	-				-0.7
1,901,825	-				-1.1
1,901,825	-				-1.0
1,901,851	-				-0.5
1,901,851	-				-0.2
1,901,860	-				+1.0
1,901,895	+				-0.5
1,901,918	-				+0.6
1,901,981	+				-1.1
1,901,982	-				+0.7
1,901,982	-				-0.1
1,901,982	-				+0.2
1,901,982	-				-1.1
1,902,000	+				-0.5
1,902,001	-				-0.5
1,902,018	+				+2.5
1,902,018	+				-0.0
1,902,019	-				-2.3
1,902,019	-				+0.2
1,902,019	-				+0.2
1,902,042	+				+1.4
1,902,082	+				+0.1
1,902,094	+				-3.1
1,902,094	+				+0.2
1,902,101	-				+0.5
1,902,105	+				-0.2
1,902,105	+				+0.3
1,902,106	-				-1.3
1,902,106	-				+1.4
1,902,138	-		Sama_1562	0.11	-0.7
1,902,250	-		Sama_1562	0.34	-0.2
1,902,250	-		Sama_1562	0.34	-1.5
1,902,250	-		Sama_1562	0.34	-0.8
1,902,345	+		Sama_1562	0.52	-2.8
1,902,378	+		Sama_1562	0.59	+0.5
1,902,399	-		Sama_1562	0.63	-0.2
1,902,468	+		Sama_1562	0.77	-0.0
1,902,468	+		Sama_1562	0.77	-3.0
1,902,468	+		Sama_1562	0.77	-0.5
1,902,577	-				-3.7
1,902,577	-				+0.1
1,902,587	+				+0.5
1,902,606	-				-1.5
1,902,609	+				-1.0
1,902,609	+				+2.1
1,902,609	+				-0.3
1,902,609	+				-0.5
1,902,610	-				+0.2
1,902,642	+				-0.2
1,902,738	+				+1.2
1,902,738	+				+0.0
1,902,739	-				-0.7
1,902,739	-				-0.7
1,902,741	-				+0.8
1,902,813	-				-0.3
1,902,826	-				-1.3
1,902,884	+				+1.0
1,902,906	+				-1.7
1,902,906	+				+0.8
1,902,906	+				+1.2
1,902,906	+				-0.4
1,902,907	-				-0.8
1,902,907	-				-1.1
1,902,907	-				+1.5
1,902,917	+				+0.2
1,902,917	+				-0.4
1,902,918	-				+0.5
1,902,918	-				+0.5
1,902,918	-				-1.1
1,902,921	+				-0.0
1,902,929	+				+0.2
1,902,929	+				-0.9
1,902,930	-				-2.3
1,902,930	-				-1.0
1,902,930	-				-2.7
1,902,930	-				-1.5
1,902,951	+				-1.1
1,902,951	+				-0.1
1,902,951	+				-1.0
1,902,952	-				-3.2
1,902,953	+				-1.5
1,902,954	-				-0.5
1,902,954	-				+0.5
1,903,055	-				-0.8
1,903,085	+				-3.5
1,903,085	+				+1.1
1,903,085	+				+1.1
1,903,085	+				+0.2
1,903,085	+				+0.0
1,903,086	-				+0.5
1,903,086	-				+0.1
1,903,086	-				-0.7
1,903,086	-				+0.1
1,903,106	+				-0.3
1,903,106	+				-0.5
1,903,106	+				+0.3
1,903,106	+				-0.1
1,903,107	-				+1.4
1,903,256	+				+0.7
1,903,256	+				+0.6
1,903,286	+				+1.2
1,903,287	-				+0.9
1,903,287	-				-0.5
1,903,308	-	cpdB	Sama_1563	0.11	+0.5
1,903,308	-	cpdB	Sama_1563	0.11	-0.7
1,903,308	-	cpdB	Sama_1563	0.11	-1.2
1,903,308	-	cpdB	Sama_1563	0.11	-1.3
1,903,328	+	cpdB	Sama_1563	0.12	-1.1
1,903,329	-	cpdB	Sama_1563	0.12	-0.4
1,903,329	-	cpdB	Sama_1563	0.12	-1.5
1,903,354	-	cpdB	Sama_1563	0.13	-0.5
1,903,469	+	cpdB	Sama_1563	0.18	-0.5
1,903,469	+	cpdB	Sama_1563	0.18	+0.3
1,903,470	-	cpdB	Sama_1563	0.18	-0.7
1,903,470	-	cpdB	Sama_1563	0.18	+0.3
1,903,470	-	cpdB	Sama_1563	0.18	-1.2
1,903,470	-	cpdB	Sama_1563	0.18	+0.8
1,903,471	+	cpdB	Sama_1563	0.18	-0.0
1,903,471	+	cpdB	Sama_1563	0.18	+0.4
1,903,472	-	cpdB	Sama_1563	0.18	+1.2
1,903,472	-	cpdB	Sama_1563	0.18	+0.1
1,903,472	-	cpdB	Sama_1563	0.18	+0.5
1,903,472	-	cpdB	Sama_1563	0.18	-0.5
1,903,472	-	cpdB	Sama_1563	0.18	-1.2
1,903,509	+	cpdB	Sama_1563	0.20	-1.0
1,903,509	+	cpdB	Sama_1563	0.20	+1.1
1,903,580	+	cpdB	Sama_1563	0.24	-0.5
1,903,581	-	cpdB	Sama_1563	0.24	+0.2
1,903,581	-	cpdB	Sama_1563	0.24	-1.0