Strain Fitness in Shewanella amazonensis SB2B around Sama_0786

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0784 and Sama_0785 are separated by 10 nucleotidesSama_0785 and Sama_0786 are separated by 69 nucleotidesSama_0786 and Sama_0787 overlap by 4 nucleotides Sama_0784: Sama_0784 - hypothetical protein (RefSeq), at 967,398 to 967,634 _0784 Sama_0785: Sama_0785 - uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase (RefSeq), at 967,645 to 968,490 _0785 Sama_0786: Sama_0786 - acetyltransferase (RefSeq), at 968,560 to 969,069 _0786 Sama_0787: Sama_0787 - peptidase A1, pepsin (RefSeq), at 969,066 to 970,403 _0787 Position (kb) 968 969 970Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 967.637 kb on + strandat 967.638 kb on - strandat 967.638 kb on - strandat 967.647 kb on - strandat 967.681 kb on + strandat 967.682 kb on - strandat 967.682 kb on - strandat 967.851 kb on + strand, within Sama_0785at 967.880 kb on + strand, within Sama_0785at 967.880 kb on + strand, within Sama_0785at 967.899 kb on + strand, within Sama_0785at 967.900 kb on - strand, within Sama_0785at 967.900 kb on - strand, within Sama_0785at 967.918 kb on + strand, within Sama_0785at 967.918 kb on + strand, within Sama_0785at 967.919 kb on - strand, within Sama_0785at 967.919 kb on - strand, within Sama_0785at 967.919 kb on - strand, within Sama_0785at 968.039 kb on + strand, within Sama_0785at 968.039 kb on + strand, within Sama_0785at 968.039 kb on + strand, within Sama_0785at 968.040 kb on - strand, within Sama_0785at 968.040 kb on - strand, within Sama_0785at 968.108 kb on + strand, within Sama_0785at 968.108 kb on + strand, within Sama_0785at 968.179 kb on - strand, within Sama_0785at 968.219 kb on + strand, within Sama_0785at 968.219 kb on + strand, within Sama_0785at 968.220 kb on - strand, within Sama_0785at 968.220 kb on - strand, within Sama_0785at 968.220 kb on - strand, within Sama_0785at 968.285 kb on + strand, within Sama_0785at 968.286 kb on - strand, within Sama_0785at 968.315 kb on + strand, within Sama_0785at 968.315 kb on + strand, within Sama_0785at 968.316 kb on - strand, within Sama_0785at 968.395 kb on + strand, within Sama_0785at 968.437 kb on + strandat 968.437 kb on + strandat 968.437 kb on + strandat 968.437 kb on + strandat 968.438 kb on - strandat 968.438 kb on - strandat 968.438 kb on - strandat 968.438 kb on - strandat 968.438 kb on - strandat 968.438 kb on - strandat 968.438 kb on - strandat 968.438 kb on - strandat 968.510 kb on + strandat 968.510 kb on + strandat 968.510 kb on + strandat 968.511 kb on - strandat 968.511 kb on - strandat 968.511 kb on - strandat 968.514 kb on + strandat 968.528 kb on - strandat 968.592 kb on - strandat 968.643 kb on + strand, within Sama_0786at 968.643 kb on + strand, within Sama_0786at 968.644 kb on - strand, within Sama_0786at 968.646 kb on + strand, within Sama_0786at 968.646 kb on + strand, within Sama_0786at 968.647 kb on - strand, within Sama_0786at 968.684 kb on + strand, within Sama_0786at 968.684 kb on + strand, within Sama_0786at 968.684 kb on + strand, within Sama_0786at 968.685 kb on - strand, within Sama_0786at 968.685 kb on - strand, within Sama_0786at 968.685 kb on - strand, within Sama_0786at 968.685 kb on - strand, within Sama_0786at 968.686 kb on + strand, within Sama_0786at 968.686 kb on + strand, within Sama_0786at 968.686 kb on + strand, within Sama_0786at 968.687 kb on - strand, within Sama_0786at 968.687 kb on - strand, within Sama_0786at 968.687 kb on - strand, within Sama_0786at 968.687 kb on - strand, within Sama_0786at 968.687 kb on - strand, within Sama_0786at 968.750 kb on + strand, within Sama_0786at 968.750 kb on + strand, within Sama_0786at 968.750 kb on + strand, within Sama_0786at 968.750 kb on + strand, within Sama_0786at 968.751 kb on - strand, within Sama_0786at 968.751 kb on - strand, within Sama_0786at 968.762 kb on + strand, within Sama_0786at 968.808 kb on - strand, within Sama_0786at 968.808 kb on - strand, within Sama_0786at 968.808 kb on - strand, within Sama_0786at 968.808 kb on - strand, within Sama_0786at 968.882 kb on + strand, within Sama_0786at 968.882 kb on + strand, within Sama_0786at 968.883 kb on - strand, within Sama_0786at 968.883 kb on - strand, within Sama_0786at 968.917 kb on + strand, within Sama_0786at 968.917 kb on + strand, within Sama_0786at 968.917 kb on + strand, within Sama_0786at 968.917 kb on + strand, within Sama_0786at 968.917 kb on + strand, within Sama_0786at 968.918 kb on - strand, within Sama_0786at 968.918 kb on - strand, within Sama_0786at 968.918 kb on - strand, within Sama_0786at 968.918 kb on - strand, within Sama_0786at 968.918 kb on - strand, within Sama_0786at 968.921 kb on - strand, within Sama_0786at 968.923 kb on - strand, within Sama_0786at 968.929 kb on + strand, within Sama_0786at 968.929 kb on + strand, within Sama_0786at 968.930 kb on - strand, within Sama_0786at 968.930 kb on - strand, within Sama_0786at 968.977 kb on + strand, within Sama_0786at 968.977 kb on + strand, within Sama_0786at 968.977 kb on + strand, within Sama_0786at 968.992 kb on - strand, within Sama_0786at 968.992 kb on - strand, within Sama_0786at 968.992 kb on - strand, within Sama_0786at 968.992 kb on - strand, within Sama_0786at 969.028 kb on + strandat 969.043 kb on + strandat 969.043 kb on + strandat 969.044 kb on - strandat 969.044 kb on - strandat 969.044 kb on - strandat 969.044 kb on - strandat 969.044 kb on - strandat 969.080 kb on + strandat 969.080 kb on + strandat 969.081 kb on - strandat 969.120 kb on - strandat 969.134 kb on + strandat 969.134 kb on + strandat 969.135 kb on - strandat 969.152 kb on + strandat 969.229 kb on - strand, within Sama_0787at 969.229 kb on - strand, within Sama_0787at 969.269 kb on + strand, within Sama_0787at 969.269 kb on + strand, within Sama_0787at 969.286 kb on + strand, within Sama_0787at 969.434 kb on + strand, within Sama_0787at 969.434 kb on + strand, within Sama_0787at 969.435 kb on - strand, within Sama_0787at 969.455 kb on + strand, within Sama_0787at 969.487 kb on - strand, within Sama_0787at 969.518 kb on + strand, within Sama_0787at 969.651 kb on + strand, within Sama_0787at 969.652 kb on - strand, within Sama_0787at 969.652 kb on - strand, within Sama_0787at 969.664 kb on + strand, within Sama_0787at 969.664 kb on + strand, within Sama_0787at 969.664 kb on + strand, within Sama_0787at 969.665 kb on - strand, within Sama_0787at 969.665 kb on - strand, within Sama_0787at 969.665 kb on - strand, within Sama_0787at 969.665 kb on - strand, within Sama_0787at 969.665 kb on - strand, within Sama_0787at 969.665 kb on - strand, within Sama_0787at 969.665 kb on - strand, within Sama_0787at 969.668 kb on - strand, within Sama_0787at 969.682 kb on - strand, within Sama_0787at 969.876 kb on - strand, within Sama_0787at 969.876 kb on - strand, within Sama_0787at 969.923 kb on + strand, within Sama_0787at 969.923 kb on + strand, within Sama_0787at 969.923 kb on + strand, within Sama_0787at 969.944 kb on + strand, within Sama_0787at 969.945 kb on - strand, within Sama_0787at 969.999 kb on + strand, within Sama_0787at 970.000 kb on - strand, within Sama_0787at 970.000 kb on - strand, within Sama_0787at 970.018 kb on + strand, within Sama_0787at 970.018 kb on + strand, within Sama_0787at 970.018 kb on + strand, within Sama_0787at 970.019 kb on - strand, within Sama_0787at 970.019 kb on - strand, within Sama_0787at 970.054 kb on + strand, within Sama_0787at 970.054 kb on + strand, within Sama_0787at 970.054 kb on + strand, within Sama_0787at 970.054 kb on + strand, within Sama_0787at 970.054 kb on + strand, within Sama_0787at 970.055 kb on - strand, within Sama_0787at 970.055 kb on - strand, within Sama_0787at 970.055 kb on - strand, within Sama_0787at 970.055 kb on - strand, within Sama_0787

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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967,637 + -0.4
967,638 - -0.3
967,638 - -0.0
967,647 - -2.8
967,681 + -0.1
967,682 - +0.4
967,682 - +0.6
967,851 + Sama_0785 0.24 +2.5
967,880 + Sama_0785 0.28 -0.5
967,880 + Sama_0785 0.28 +0.4
967,899 + Sama_0785 0.30 +0.4
967,900 - Sama_0785 0.30 +0.4
967,900 - Sama_0785 0.30 -0.1
967,918 + Sama_0785 0.32 -0.4
967,918 + Sama_0785 0.32 +1.3
967,919 - Sama_0785 0.32 +0.9
967,919 - Sama_0785 0.32 -0.8
967,919 - Sama_0785 0.32 -0.1
968,039 + Sama_0785 0.47 +0.6
968,039 + Sama_0785 0.47 +0.1
968,039 + Sama_0785 0.47 -0.7
968,040 - Sama_0785 0.47 +0.1
968,040 - Sama_0785 0.47 -2.3
968,108 + Sama_0785 0.55 -1.2
968,108 + Sama_0785 0.55 +0.8
968,179 - Sama_0785 0.63 -0.3
968,219 + Sama_0785 0.68 +0.3
968,219 + Sama_0785 0.68 +0.8
968,220 - Sama_0785 0.68 +1.4
968,220 - Sama_0785 0.68 -0.9
968,220 - Sama_0785 0.68 -0.8
968,285 + Sama_0785 0.76 -0.5
968,286 - Sama_0785 0.76 -0.3
968,315 + Sama_0785 0.79 +0.4
968,315 + Sama_0785 0.79 -1.4
968,316 - Sama_0785 0.79 +0.0
968,395 + Sama_0785 0.89 +0.7
968,437 + +0.1
968,437 + +0.5
968,437 + +0.9
968,437 + -0.1
968,438 - +1.5
968,438 - -0.7
968,438 - -0.1
968,438 - -1.7
968,438 - -1.5
968,438 - +0.0
968,438 - +0.4
968,438 - -0.4
968,510 + +1.4
968,510 + -0.9
968,510 + +0.6
968,511 - -0.5
968,511 - +0.2
968,511 - +0.6
968,514 + +0.1
968,528 - +0.1
968,592 - -0.6
968,643 + Sama_0786 0.16 +0.1
968,643 + Sama_0786 0.16 +0.4
968,644 - Sama_0786 0.16 +0.1
968,646 + Sama_0786 0.17 +2.0
968,646 + Sama_0786 0.17 -1.3
968,647 - Sama_0786 0.17 +0.3
968,684 + Sama_0786 0.24 -0.7
968,684 + Sama_0786 0.24 +1.2
968,684 + Sama_0786 0.24 -0.2
968,685 - Sama_0786 0.25 +0.1
968,685 - Sama_0786 0.25 +2.2
968,685 - Sama_0786 0.25 -1.4
968,685 - Sama_0786 0.25 +0.1
968,686 + Sama_0786 0.25 +0.2
968,686 + Sama_0786 0.25 +0.1
968,686 + Sama_0786 0.25 +1.0
968,687 - Sama_0786 0.25 -0.1
968,687 - Sama_0786 0.25 -1.1
968,687 - Sama_0786 0.25 -1.1
968,687 - Sama_0786 0.25 -1.1
968,687 - Sama_0786 0.25 -1.1
968,750 + Sama_0786 0.37 +0.6
968,750 + Sama_0786 0.37 -0.1
968,750 + Sama_0786 0.37 +1.4
968,750 + Sama_0786 0.37 -0.1
968,751 - Sama_0786 0.37 +0.1
968,751 - Sama_0786 0.37 -0.7
968,762 + Sama_0786 0.40 +0.9
968,808 - Sama_0786 0.49 -1.1
968,808 - Sama_0786 0.49 -0.3
968,808 - Sama_0786 0.49 +0.1
968,808 - Sama_0786 0.49 -0.8
968,882 + Sama_0786 0.63 -1.9
968,882 + Sama_0786 0.63 -1.4
968,883 - Sama_0786 0.63 +0.1
968,883 - Sama_0786 0.63 +0.1
968,917 + Sama_0786 0.70 +2.8
968,917 + Sama_0786 0.70 -1.8
968,917 + Sama_0786 0.70 -0.6
968,917 + Sama_0786 0.70 -0.7
968,917 + Sama_0786 0.70 +2.6
968,918 - Sama_0786 0.70 -0.7
968,918 - Sama_0786 0.70 -0.4
968,918 - Sama_0786 0.70 -0.8
968,918 - Sama_0786 0.70 +0.6
968,918 - Sama_0786 0.70 +0.1
968,921 - Sama_0786 0.71 -2.1
968,923 - Sama_0786 0.71 +1.3
968,929 + Sama_0786 0.72 +1.0
968,929 + Sama_0786 0.72 -0.0
968,930 - Sama_0786 0.73 +0.5
968,930 - Sama_0786 0.73 +0.1
968,977 + Sama_0786 0.82 -0.7
968,977 + Sama_0786 0.82 +0.3
968,977 + Sama_0786 0.82 +0.4
968,992 - Sama_0786 0.85 -0.5
968,992 - Sama_0786 0.85 -0.0
968,992 - Sama_0786 0.85 +0.8
968,992 - Sama_0786 0.85 +1.5
969,028 + -0.7
969,043 + +0.4
969,043 + +0.0
969,044 - -2.1
969,044 - -0.9
969,044 - +1.1
969,044 - +0.2
969,044 - +1.5
969,080 + -1.9
969,080 + +0.1
969,081 - +0.6
969,120 - +1.4
969,134 + +0.9
969,134 + +0.2
969,135 - -0.1
969,152 + -0.7
969,229 - Sama_0787 0.12 -1.3
969,229 - Sama_0787 0.12 -1.2
969,269 + Sama_0787 0.15 -1.3
969,269 + Sama_0787 0.15 +1.3
969,286 + Sama_0787 0.16 -0.3
969,434 + Sama_0787 0.28 -1.7
969,434 + Sama_0787 0.28 +1.2
969,435 - Sama_0787 0.28 -0.9
969,455 + Sama_0787 0.29 -0.6
969,487 - Sama_0787 0.31 +0.1
969,518 + Sama_0787 0.34 +0.5
969,651 + Sama_0787 0.44 +1.4
969,652 - Sama_0787 0.44 +0.5
969,652 - Sama_0787 0.44 -0.0
969,664 + Sama_0787 0.45 +1.8
969,664 + Sama_0787 0.45 +0.3
969,664 + Sama_0787 0.45 -0.4
969,665 - Sama_0787 0.45 +1.1
969,665 - Sama_0787 0.45 -0.5
969,665 - Sama_0787 0.45 -0.1
969,665 - Sama_0787 0.45 +1.5
969,665 - Sama_0787 0.45 -0.7
969,665 - Sama_0787 0.45 +1.4
969,665 - Sama_0787 0.45 -0.3
969,668 - Sama_0787 0.45 +0.0
969,682 - Sama_0787 0.46 -0.0
969,876 - Sama_0787 0.61 +0.1
969,876 - Sama_0787 0.61 +0.9
969,923 + Sama_0787 0.64 -0.3
969,923 + Sama_0787 0.64 -0.1
969,923 + Sama_0787 0.64 -2.6
969,944 + Sama_0787 0.66 +0.7
969,945 - Sama_0787 0.66 +1.0
969,999 + Sama_0787 0.70 -0.3
970,000 - Sama_0787 0.70 +0.4
970,000 - Sama_0787 0.70 +1.0
970,018 + Sama_0787 0.71 +1.2
970,018 + Sama_0787 0.71 -1.7
970,018 + Sama_0787 0.71 +0.1
970,019 - Sama_0787 0.71 +0.8
970,019 - Sama_0787 0.71 -0.7
970,054 + Sama_0787 0.74 -0.1
970,054 + Sama_0787 0.74 -0.3
970,054 + Sama_0787 0.74 -0.1
970,054 + Sama_0787 0.74 -0.3
970,054 + Sama_0787 0.74 +0.4
970,055 - Sama_0787 0.74 -0.3
970,055 - Sama_0787 0.74 +1.2
970,055 - Sama_0787 0.74 -0.7
970,055 - Sama_0787 0.74 -1.4

Or see this region's nucleotide sequence