Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0748 and Sama_0749 are separated by 80 nucleotides Sama_0749 and Sama_0750 are separated by 155 nucleotides Sama_0750 and Sama_0751 are separated by 377 nucleotides
Sama_0748: Sama_0748 - response regulator receiver protein (RefSeq), at 923,436 to 924,374
_0748
Sama_0749: Sama_0749 - hypothetical protein (RefSeq), at 924,455 to 924,718
_0749
Sama_0750: Sama_0750 - catalase-like protein (RefSeq), at 924,874 to 925,872
_0750
Sama_0751: Sama_0751 - GTP-binding protein HflX (RefSeq), at 926,250 to 927,581
_0751
Position (kb) 924
925
926 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 923.919 kb on + strand, within Sama_0748 at 923.919 kb on + strand, within Sama_0748 at 923.920 kb on - strand, within Sama_0748 at 923.920 kb on - strand, within Sama_0748 at 923.963 kb on + strand, within Sama_0748 at 923.963 kb on + strand, within Sama_0748 at 923.963 kb on + strand, within Sama_0748 at 923.964 kb on - strand, within Sama_0748 at 923.991 kb on + strand, within Sama_0748 at 923.991 kb on + strand, within Sama_0748 at 923.991 kb on + strand, within Sama_0748 at 924.004 kb on - strand, within Sama_0748 at 924.004 kb on - strand, within Sama_0748 at 924.004 kb on - strand, within Sama_0748 at 924.004 kb on - strand, within Sama_0748 at 924.105 kb on + strand, within Sama_0748 at 924.105 kb on + strand, within Sama_0748 at 924.106 kb on - strand, within Sama_0748 at 924.273 kb on + strand, within Sama_0748 at 924.308 kb on + strand at 924.313 kb on + strand at 924.313 kb on + strand at 924.314 kb on - strand at 924.314 kb on - strand at 924.314 kb on - strand at 924.318 kb on + strand at 924.318 kb on + strand at 924.319 kb on - strand at 924.319 kb on - strand at 924.319 kb on - strand at 924.319 kb on - strand at 924.319 kb on - strand at 924.319 kb on - strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.383 kb on - strand at 924.457 kb on - strand at 924.538 kb on + strand, within Sama_0749 at 924.598 kb on + strand, within Sama_0749 at 924.598 kb on + strand, within Sama_0749 at 924.598 kb on + strand, within Sama_0749 at 924.599 kb on - strand, within Sama_0749 at 924.599 kb on - strand, within Sama_0749 at 924.599 kb on - strand, within Sama_0749 at 924.599 kb on - strand, within Sama_0749 at 924.665 kb on + strand, within Sama_0749 at 924.665 kb on + strand, within Sama_0749 at 924.665 kb on + strand, within Sama_0749 at 924.665 kb on + strand, within Sama_0749 at 924.666 kb on - strand, within Sama_0749 at 924.706 kb on + strand at 924.764 kb on - strand at 924.820 kb on - strand at 924.820 kb on - strand at 924.875 kb on + strand at 924.875 kb on + strand at 924.876 kb on - strand at 924.876 kb on - strand at 924.876 kb on - strand at 924.876 kb on - strand at 924.888 kb on + strand at 924.902 kb on + strand at 924.926 kb on - strand at 924.945 kb on + strand at 924.961 kb on + strand at 924.961 kb on + strand at 925.030 kb on + strand, within Sama_0750 at 925.031 kb on - strand, within Sama_0750 at 925.031 kb on - strand, within Sama_0750 at 925.031 kb on - strand, within Sama_0750 at 925.092 kb on + strand, within Sama_0750 at 925.092 kb on + strand, within Sama_0750 at 925.092 kb on + strand, within Sama_0750 at 925.093 kb on - strand, within Sama_0750 at 925.093 kb on - strand, within Sama_0750 at 925.095 kb on + strand, within Sama_0750 at 925.095 kb on + strand, within Sama_0750 at 925.096 kb on - strand, within Sama_0750 at 925.121 kb on + strand, within Sama_0750 at 925.121 kb on + strand, within Sama_0750 at 925.122 kb on - strand, within Sama_0750 at 925.122 kb on - strand, within Sama_0750 at 925.152 kb on + strand, within Sama_0750 at 925.153 kb on - strand, within Sama_0750 at 925.210 kb on - strand, within Sama_0750 at 925.298 kb on + strand, within Sama_0750 at 925.298 kb on + strand, within Sama_0750 at 925.298 kb on + strand, within Sama_0750 at 925.299 kb on - strand, within Sama_0750 at 925.309 kb on + strand, within Sama_0750 at 925.310 kb on - strand, within Sama_0750 at 925.310 kb on - strand, within Sama_0750 at 925.364 kb on + strand, within Sama_0750 at 925.364 kb on + strand, within Sama_0750 at 925.364 kb on + strand, within Sama_0750 at 925.365 kb on - strand, within Sama_0750 at 925.365 kb on - strand, within Sama_0750 at 925.365 kb on - strand, within Sama_0750 at 925.365 kb on - strand, within Sama_0750 at 925.365 kb on - strand, within Sama_0750 at 925.506 kb on + strand, within Sama_0750 at 925.506 kb on + strand, within Sama_0750 at 925.506 kb on + strand, within Sama_0750 at 925.506 kb on + strand, within Sama_0750 at 925.507 kb on - strand, within Sama_0750 at 925.507 kb on - strand, within Sama_0750 at 925.507 kb on - strand, within Sama_0750 at 925.542 kb on + strand, within Sama_0750 at 925.543 kb on - strand, within Sama_0750 at 925.567 kb on + strand, within Sama_0750 at 925.567 kb on + strand, within Sama_0750 at 925.568 kb on - strand, within Sama_0750 at 925.588 kb on + strand, within Sama_0750 at 925.612 kb on - strand, within Sama_0750 at 925.638 kb on + strand, within Sama_0750 at 925.686 kb on + strand, within Sama_0750 at 925.726 kb on - strand, within Sama_0750 at 925.762 kb on - strand, within Sama_0750 at 925.818 kb on + strand at 925.836 kb on + strand at 925.836 kb on + strand at 925.836 kb on + strand at 925.836 kb on + strand at 925.862 kb on + strand at 925.862 kb on + strand at 925.862 kb on + strand at 925.862 kb on + strand at 925.863 kb on - strand at 925.863 kb on - strand at 925.863 kb on - strand at 925.863 kb on - strand at 925.863 kb on - strand at 925.863 kb on - strand at 925.919 kb on + strand at 925.922 kb on + strand at 925.922 kb on + strand at 925.926 kb on - strand at 926.007 kb on - strand at 926.007 kb on - strand at 926.027 kb on + strand at 926.027 kb on + strand at 926.028 kb on - strand at 926.161 kb on + strand at 926.161 kb on + strand at 926.162 kb on - strand at 926.162 kb on - strand at 926.162 kb on - strand at 926.162 kb on - strand at 926.162 kb on - strand at 926.162 kb on - strand at 926.170 kb on + strand at 926.171 kb on - strand at 926.172 kb on + strand at 926.195 kb on + strand at 926.195 kb on + strand at 926.195 kb on + strand at 926.196 kb on - strand at 926.249 kb on + strand at 926.249 kb on + strand at 926.250 kb on - strand at 926.250 kb on - strand at 926.250 kb on - strand at 926.275 kb on + strand at 926.276 kb on - strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.385 kb on + strand, within Sama_0751 at 926.386 kb on - strand, within Sama_0751 at 926.386 kb on - strand, within Sama_0751 at 926.386 kb on - strand, within Sama_0751 at 926.414 kb on + strand, within Sama_0751 at 926.414 kb on + strand, within Sama_0751 at 926.414 kb on + strand, within Sama_0751 at 926.414 kb on + strand, within Sama_0751 at 926.414 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.510 kb on - strand, within Sama_0751 at 926.510 kb on - strand, within Sama_0751 at 926.510 kb on - strand, within Sama_0751 at 926.510 kb on - strand, within Sama_0751 at 926.510 kb on - strand, within Sama_0751 at 926.510 kb on - strand, within Sama_0751 at 926.587 kb on + strand, within Sama_0751 at 926.587 kb on + strand, within Sama_0751 at 926.587 kb on + strand, within Sama_0751 at 926.588 kb on - strand, within Sama_0751 at 926.588 kb on - strand, within Sama_0751 at 926.588 kb on - strand, within Sama_0751 at 926.603 kb on + strand, within Sama_0751 at 926.604 kb on - strand, within Sama_0751 at 926.687 kb on + strand, within Sama_0751 at 926.688 kb on - strand, within Sama_0751 at 926.727 kb on + strand, within Sama_0751 at 926.728 kb on - strand, within Sama_0751 at 926.728 kb on - strand, within Sama_0751 at 926.731 kb on + strand, within Sama_0751 at 926.731 kb on + strand, within Sama_0751 at 926.731 kb on + strand, within Sama_0751 at 926.731 kb on + strand, within Sama_0751 at 926.869 kb on + strand, within Sama_0751 at 926.869 kb on + strand, within Sama_0751 at 926.870 kb on - strand, within Sama_0751 at 926.870 kb on - strand, within Sama_0751 at 926.870 kb on - strand, within Sama_0751 at 926.870 kb on - strand, within Sama_0751 at 926.870 kb on - strand, within Sama_0751
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 923,919 + Sama_0748 0.51 -1.4 923,919 + Sama_0748 0.51 +0.3 923,920 - Sama_0748 0.52 +0.6 923,920 - Sama_0748 0.52 +0.5 923,963 + Sama_0748 0.56 -0.1 923,963 + Sama_0748 0.56 +1.2 923,963 + Sama_0748 0.56 +0.4 923,964 - Sama_0748 0.56 +0.5 923,991 + Sama_0748 0.59 +0.5 923,991 + Sama_0748 0.59 -0.4 923,991 + Sama_0748 0.59 -2.4 924,004 - Sama_0748 0.60 -1.9 924,004 - Sama_0748 0.60 -0.2 924,004 - Sama_0748 0.60 +0.0 924,004 - Sama_0748 0.60 -3.4 924,105 + Sama_0748 0.71 -0.3 924,105 + Sama_0748 0.71 -0.3 924,106 - Sama_0748 0.71 -1.1 924,273 + Sama_0748 0.89 +0.6 924,308 + +0.7 924,313 + +0.2 924,313 + -1.4 924,314 - +0.4 924,314 - +0.3 924,314 - +0.3 924,318 + -0.8 924,318 + +1.6 924,319 - +1.3 924,319 - -0.8 924,319 - +0.9 924,319 - +0.3 924,319 - +0.9 924,319 - +0.8 924,353 + +1.1 924,353 + +0.2 924,353 + +1.2 924,353 + +0.2 924,353 + +1.3 924,353 + +0.9 924,353 + +0.2 924,353 + +0.4 924,353 + +0.4 924,353 + -0.7 924,353 + +0.7 924,353 + +0.3 924,353 + -0.3 924,353 + -2.1 924,353 + +1.6 924,353 + +0.8 924,353 + -0.1 924,353 + +0.3 924,354 - +0.5 924,354 - +0.1 924,354 - +0.6 924,354 - +0.5 924,354 - -0.4 924,354 - -0.9 924,354 - -0.6 924,354 - +0.1 924,354 - -2.4 924,354 - +2.4 924,354 - +0.2 924,354 - -1.0 924,383 - -1.0 924,457 - +1.6 924,538 + Sama_0749 0.31 +0.1 924,598 + Sama_0749 0.54 +0.2 924,598 + Sama_0749 0.54 -0.1 924,598 + Sama_0749 0.54 -0.5 924,599 - Sama_0749 0.55 +0.6 924,599 - Sama_0749 0.55 +0.4 924,599 - Sama_0749 0.55 +2.5 924,599 - Sama_0749 0.55 -0.7 924,665 + Sama_0749 0.80 -0.3 924,665 + Sama_0749 0.80 +0.3 924,665 + Sama_0749 0.80 -0.7 924,665 + Sama_0749 0.80 -0.8 924,666 - Sama_0749 0.80 -0.1 924,706 + -0.2 924,764 - +0.2 924,820 - -1.1 924,820 - -1.3 924,875 + -0.2 924,875 + -1.4 924,876 - +0.3 924,876 - -0.3 924,876 - +0.5 924,876 - +0.4 924,888 + +0.9 924,902 + -0.4 924,926 - +1.3 924,945 + +0.1 924,961 + -0.0 924,961 + +0.2 925,030 + Sama_0750 0.16 -0.4 925,031 - Sama_0750 0.16 +0.3 925,031 - Sama_0750 0.16 -1.8 925,031 - Sama_0750 0.16 -0.5 925,092 + Sama_0750 0.22 +0.3 925,092 + Sama_0750 0.22 -2.6 925,092 + Sama_0750 0.22 -0.7 925,093 - Sama_0750 0.22 -1.9 925,093 - Sama_0750 0.22 -0.0 925,095 + Sama_0750 0.22 -1.4 925,095 + Sama_0750 0.22 -0.5 925,096 - Sama_0750 0.22 -0.3 925,121 + Sama_0750 0.25 +0.8 925,121 + Sama_0750 0.25 -2.0 925,122 - Sama_0750 0.25 -0.9 925,122 - Sama_0750 0.25 -0.8 925,152 + Sama_0750 0.28 -0.2 925,153 - Sama_0750 0.28 +0.9 925,210 - Sama_0750 0.34 -0.1 925,298 + Sama_0750 0.42 -0.6 925,298 + Sama_0750 0.42 +0.5 925,298 + Sama_0750 0.42 -0.4 925,299 - Sama_0750 0.43 -1.9 925,309 + Sama_0750 0.44 +0.4 925,310 - Sama_0750 0.44 +1.0 925,310 - Sama_0750 0.44 -0.0 925,364 + Sama_0750 0.49 -0.1 925,364 + Sama_0750 0.49 -0.7 925,364 + Sama_0750 0.49 +0.6 925,365 - Sama_0750 0.49 +1.1 925,365 - Sama_0750 0.49 -0.4 925,365 - Sama_0750 0.49 +0.5 925,365 - Sama_0750 0.49 -0.1 925,365 - Sama_0750 0.49 +0.5 925,506 + Sama_0750 0.63 -0.8 925,506 + Sama_0750 0.63 -0.4 925,506 + Sama_0750 0.63 -0.5 925,506 + Sama_0750 0.63 -0.1 925,507 - Sama_0750 0.63 +1.3 925,507 - Sama_0750 0.63 +1.1 925,507 - Sama_0750 0.63 -1.1 925,542 + Sama_0750 0.67 -0.1 925,543 - Sama_0750 0.67 -1.8 925,567 + Sama_0750 0.69 +0.9 925,567 + Sama_0750 0.69 -0.9 925,568 - Sama_0750 0.69 +0.1 925,588 + Sama_0750 0.71 +2.9 925,612 - Sama_0750 0.74 +0.2 925,638 + Sama_0750 0.76 -0.8 925,686 + Sama_0750 0.81 -0.6 925,726 - Sama_0750 0.85 +1.1 925,762 - Sama_0750 0.89 -0.8 925,818 + +0.6 925,836 + +0.9 925,836 + -0.4 925,836 + +0.8 925,836 + +0.4 925,862 + -0.2 925,862 + +0.9 925,862 + +0.5 925,862 + -0.7 925,863 - -0.8 925,863 - -1.4 925,863 - +0.9 925,863 - +0.5 925,863 - -0.1 925,863 - -0.1 925,919 + -2.3 925,922 + +0.2 925,922 + -0.5 925,926 - -0.6 926,007 - +0.7 926,007 - -0.9 926,027 + -0.9 926,027 + -0.0 926,028 - -0.7 926,161 + +0.2 926,161 + -0.1 926,162 - +0.2 926,162 - +0.8 926,162 - -0.2 926,162 - -1.0 926,162 - -2.5 926,162 - +0.4 926,170 + +0.4 926,171 - -0.8 926,172 + +0.2 926,195 + -0.1 926,195 + +1.4 926,195 + -0.3 926,196 - +0.8 926,249 + -0.7 926,249 + -0.8 926,250 - -0.0 926,250 - -0.9 926,250 - -0.4 926,275 + -1.8 926,276 - -0.0 926,314 + -0.2 926,314 + -0.2 926,314 + -0.4 926,314 + +0.9 926,314 + -0.4 926,314 + +1.2 926,314 + +0.2 926,314 + -1.0 926,314 + +0.8 926,314 + -0.7 926,314 + -0.7 926,314 + +0.1 926,314 + +0.2 926,315 - -0.1 926,315 - +0.1 926,315 - -0.3 926,315 - -1.2 926,315 - -0.7 926,315 - +1.6 926,315 - -0.7 926,315 - -0.4 926,315 - -1.1 926,315 - -0.8 926,315 - +1.7 926,315 - -0.1 926,315 - +0.4 926,315 - -0.2 926,315 - +0.6 926,385 + Sama_0751 0.10 +1.1 926,386 - Sama_0751 0.10 -0.4 926,386 - Sama_0751 0.10 -1.7 926,386 - Sama_0751 0.10 -0.9 926,414 + Sama_0751 0.12 +0.2 926,414 + Sama_0751 0.12 +0.2 926,414 + Sama_0751 0.12 +1.9 926,414 + Sama_0751 0.12 +1.2 926,414 + Sama_0751 0.12 -0.6 926,509 + Sama_0751 0.19 +0.8 926,509 + Sama_0751 0.19 -1.2 926,509 + Sama_0751 0.19 +0.1 926,509 + Sama_0751 0.19 +0.7 926,509 + Sama_0751 0.19 +0.1 926,509 + Sama_0751 0.19 -0.0 926,509 + Sama_0751 0.19 +0.2 926,509 + Sama_0751 0.19 -0.2 926,509 + Sama_0751 0.19 +0.2 926,509 + Sama_0751 0.19 +0.3 926,509 + Sama_0751 0.19 -0.4 926,509 + Sama_0751 0.19 +0.2 926,509 + Sama_0751 0.19 -0.2 926,509 + Sama_0751 0.19 -0.7 926,509 + Sama_0751 0.19 +0.7 926,509 + Sama_0751 0.19 +0.1 926,510 - Sama_0751 0.20 -0.8 926,510 - Sama_0751 0.20 +0.9 926,510 - Sama_0751 0.20 +0.6 926,510 - Sama_0751 0.20 +1.0 926,510 - Sama_0751 0.20 +0.9 926,510 - Sama_0751 0.20 +0.3 926,587 + Sama_0751 0.25 +0.5 926,587 + Sama_0751 0.25 +0.2 926,587 + Sama_0751 0.25 +0.1 926,588 - Sama_0751 0.25 +0.7 926,588 - Sama_0751 0.25 -0.4 926,588 - Sama_0751 0.25 -0.7 926,603 + Sama_0751 0.27 +0.3 926,604 - Sama_0751 0.27 +0.2 926,687 + Sama_0751 0.33 -0.7 926,688 - Sama_0751 0.33 +2.4 926,727 + Sama_0751 0.36 -2.8 926,728 - Sama_0751 0.36 +0.8 926,728 - Sama_0751 0.36 +0.3 926,731 + Sama_0751 0.36 +0.5 926,731 + Sama_0751 0.36 -0.1 926,731 + Sama_0751 0.36 -0.0 926,731 + Sama_0751 0.36 +0.7 926,869 + Sama_0751 0.46 +0.2 926,869 + Sama_0751 0.46 +0.1 926,870 - Sama_0751 0.47 +1.2 926,870 - Sama_0751 0.47 -1.4 926,870 - Sama_0751 0.47 +0.3 926,870 - Sama_0751 0.47 -0.2 926,870 - Sama_0751 0.47 +2.2
Or see this region's nucleotide sequence