Strain Fitness in Shewanella amazonensis SB2B around Sama_0710

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0708 and Sama_0709 overlap by 8 nucleotidesSama_0709 and Sama_0710 are separated by 8 nucleotidesSama_0710 and Sama_0711 are separated by 1 nucleotidesSama_0711 and Sama_0712 overlap by 13 nucleotidesSama_0712 and Sama_0713 overlap by 4 nucleotides Sama_0708: Sama_0708 - type II/IV secretion system protein E (RefSeq), at 870,224 to 871,993 _0708 Sama_0709: Sama_0709 - putative type II secretion system protein F (RefSeq), at 871,986 to 872,837 _0709 Sama_0710: Sama_0710 - putative type II secretion system protein F (RefSeq), at 872,846 to 873,709 _0710 Sama_0711: Sama_0711 - hypothetical protein (RefSeq), at 873,711 to 874,055 _0711 Sama_0712: Sama_0712 - hypothetical protein (RefSeq), at 874,043 to 874,528 _0712 Sama_0713: Sama_0713 - hypothetical protein (RefSeq), at 874,525 to 875,211 _0713 Position (kb) 872 873 874Strain fitness (log2 ratio) -2 -1 0 1 2at 871.892 kb on + strandat 871.892 kb on + strandat 871.892 kb on + strandat 871.892 kb on + strandat 871.906 kb on + strandat 871.907 kb on - strandat 871.922 kb on + strandat 871.923 kb on - strandat 871.963 kb on + strandat 871.963 kb on + strandat 872.096 kb on + strand, within Sama_0709at 872.096 kb on + strand, within Sama_0709at 872.097 kb on - strand, within Sama_0709at 872.227 kb on + strand, within Sama_0709at 872.227 kb on + strand, within Sama_0709at 872.228 kb on - strand, within Sama_0709at 872.233 kb on + strand, within Sama_0709at 872.233 kb on + strand, within Sama_0709at 872.234 kb on - strand, within Sama_0709at 872.234 kb on - strand, within Sama_0709at 872.280 kb on + strand, within Sama_0709at 872.321 kb on - strand, within Sama_0709at 872.391 kb on - strand, within Sama_0709at 872.490 kb on + strand, within Sama_0709at 872.491 kb on - strand, within Sama_0709at 872.665 kb on + strand, within Sama_0709at 872.665 kb on + strand, within Sama_0709at 872.665 kb on + strand, within Sama_0709at 872.665 kb on + strand, within Sama_0709at 872.665 kb on + strand, within Sama_0709at 872.665 kb on + strand, within Sama_0709at 872.665 kb on + strand, within Sama_0709at 872.665 kb on + strand, within Sama_0709at 872.665 kb on + strand, within Sama_0709at 872.665 kb on + strand, within Sama_0709at 872.666 kb on - strand, within Sama_0709at 872.666 kb on - strand, within Sama_0709at 872.666 kb on - strand, within Sama_0709at 872.666 kb on - strand, within Sama_0709at 872.666 kb on - strand, within Sama_0709at 872.706 kb on + strand, within Sama_0709at 872.706 kb on + strand, within Sama_0709at 872.707 kb on - strand, within Sama_0709at 872.711 kb on + strand, within Sama_0709at 872.712 kb on - strand, within Sama_0709at 872.712 kb on - strand, within Sama_0709at 872.712 kb on - strand, within Sama_0709at 872.712 kb on - strand, within Sama_0709at 872.722 kb on + strand, within Sama_0709at 872.723 kb on - strand, within Sama_0709at 872.768 kb on - strandat 872.799 kb on + strandat 872.799 kb on + strandat 872.799 kb on + strandat 872.799 kb on + strandat 872.800 kb on - strandat 872.830 kb on - strandat 872.835 kb on + strandat 872.835 kb on + strandat 872.835 kb on + strandat 872.835 kb on + strandat 872.836 kb on - strandat 872.836 kb on - strandat 872.870 kb on + strandat 872.870 kb on + strandat 872.871 kb on - strandat 872.871 kb on - strandat 872.871 kb on - strandat 872.916 kb on - strandat 872.947 kb on + strand, within Sama_0710at 873.009 kb on - strand, within Sama_0710at 873.009 kb on - strand, within Sama_0710at 873.035 kb on + strand, within Sama_0710at 873.035 kb on + strand, within Sama_0710at 873.036 kb on - strand, within Sama_0710at 873.036 kb on - strand, within Sama_0710at 873.047 kb on - strand, within Sama_0710at 873.066 kb on + strand, within Sama_0710at 873.075 kb on + strand, within Sama_0710at 873.080 kb on + strand, within Sama_0710at 873.080 kb on + strand, within Sama_0710at 873.080 kb on + strand, within Sama_0710at 873.080 kb on + strand, within Sama_0710at 873.081 kb on - strand, within Sama_0710at 873.101 kb on + strand, within Sama_0710at 873.101 kb on + strand, within Sama_0710at 873.101 kb on + strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.142 kb on + strand, within Sama_0710at 873.143 kb on - strand, within Sama_0710at 873.143 kb on - strand, within Sama_0710at 873.143 kb on - strand, within Sama_0710at 873.143 kb on - strand, within Sama_0710at 873.143 kb on - strand, within Sama_0710at 873.177 kb on + strand, within Sama_0710at 873.178 kb on - strand, within Sama_0710at 873.188 kb on + strand, within Sama_0710at 873.188 kb on + strand, within Sama_0710at 873.188 kb on + strand, within Sama_0710at 873.188 kb on + strand, within Sama_0710at 873.189 kb on - strand, within Sama_0710at 873.189 kb on - strand, within Sama_0710at 873.189 kb on - strand, within Sama_0710at 873.189 kb on - strand, within Sama_0710at 873.246 kb on + strand, within Sama_0710at 873.247 kb on - strand, within Sama_0710at 873.253 kb on + strand, within Sama_0710at 873.254 kb on - strand, within Sama_0710at 873.290 kb on + strand, within Sama_0710at 873.291 kb on - strand, within Sama_0710at 873.291 kb on - strand, within Sama_0710at 873.395 kb on + strand, within Sama_0710at 873.424 kb on + strand, within Sama_0710at 873.425 kb on - strand, within Sama_0710at 873.471 kb on + strand, within Sama_0710at 873.471 kb on + strand, within Sama_0710at 873.472 kb on - strand, within Sama_0710at 873.472 kb on - strand, within Sama_0710at 873.472 kb on - strand, within Sama_0710at 873.482 kb on - strand, within Sama_0710at 873.482 kb on - strand, within Sama_0710at 873.482 kb on - strand, within Sama_0710at 873.536 kb on + strand, within Sama_0710at 873.536 kb on + strand, within Sama_0710at 873.537 kb on - strand, within Sama_0710at 873.635 kb on - strandat 873.643 kb on + strandat 873.644 kb on - strandat 873.761 kb on - strand, within Sama_0711at 873.761 kb on - strand, within Sama_0711at 873.761 kb on - strand, within Sama_0711at 873.761 kb on - strand, within Sama_0711at 873.879 kb on + strand, within Sama_0711at 873.880 kb on - strand, within Sama_0711at 873.880 kb on - strand, within Sama_0711at 873.929 kb on - strand, within Sama_0711at 873.982 kb on + strand, within Sama_0711at 873.982 kb on + strand, within Sama_0711at 874.040 kb on + strandat 874.048 kb on + strandat 874.057 kb on + strandat 874.102 kb on + strand, within Sama_0712at 874.103 kb on - strand, within Sama_0712at 874.103 kb on - strand, within Sama_0712at 874.103 kb on - strand, within Sama_0712at 874.103 kb on - strand, within Sama_0712at 874.103 kb on - strand, within Sama_0712at 874.118 kb on - strand, within Sama_0712at 874.147 kb on + strand, within Sama_0712at 874.147 kb on + strand, within Sama_0712at 874.147 kb on + strand, within Sama_0712at 874.148 kb on - strand, within Sama_0712at 874.148 kb on - strand, within Sama_0712at 874.179 kb on - strand, within Sama_0712at 874.180 kb on + strand, within Sama_0712at 874.180 kb on + strand, within Sama_0712at 874.180 kb on + strand, within Sama_0712at 874.180 kb on + strand, within Sama_0712at 874.180 kb on + strand, within Sama_0712at 874.181 kb on - strand, within Sama_0712at 874.215 kb on - strand, within Sama_0712at 874.244 kb on + strand, within Sama_0712at 874.244 kb on + strand, within Sama_0712at 874.245 kb on - strand, within Sama_0712at 874.245 kb on - strand, within Sama_0712at 874.245 kb on - strand, within Sama_0712at 874.277 kb on + strand, within Sama_0712at 874.277 kb on + strand, within Sama_0712at 874.277 kb on + strand, within Sama_0712at 874.277 kb on + strand, within Sama_0712at 874.277 kb on + strand, within Sama_0712at 874.277 kb on + strand, within Sama_0712at 874.277 kb on + strand, within Sama_0712at 874.277 kb on + strand, within Sama_0712at 874.278 kb on - strand, within Sama_0712at 874.278 kb on - strand, within Sama_0712at 874.278 kb on - strand, within Sama_0712at 874.278 kb on - strand, within Sama_0712at 874.278 kb on - strand, within Sama_0712at 874.278 kb on - strand, within Sama_0712at 874.329 kb on - strand, within Sama_0712at 874.361 kb on + strand, within Sama_0712at 874.361 kb on + strand, within Sama_0712at 874.361 kb on + strand, within Sama_0712at 874.361 kb on + strand, within Sama_0712at 874.361 kb on + strand, within Sama_0712at 874.362 kb on - strand, within Sama_0712at 874.362 kb on - strand, within Sama_0712at 874.429 kb on + strand, within Sama_0712at 874.430 kb on - strand, within Sama_0712at 874.455 kb on + strand, within Sama_0712at 874.455 kb on + strand, within Sama_0712at 874.456 kb on - strand, within Sama_0712at 874.520 kb on - strandat 874.631 kb on + strand, within Sama_0713at 874.631 kb on + strand, within Sama_0713at 874.632 kb on - strand, within Sama_0713at 874.648 kb on + strand, within Sama_0713at 874.648 kb on + strand, within Sama_0713at 874.648 kb on + strand, within Sama_0713at 874.648 kb on + strand, within Sama_0713at 874.648 kb on + strand, within Sama_0713at 874.648 kb on + strand, within Sama_0713at 874.649 kb on - strand, within Sama_0713at 874.649 kb on - strand, within Sama_0713at 874.649 kb on - strand, within Sama_0713at 874.649 kb on - strand, within Sama_0713at 874.649 kb on - strand, within Sama_0713at 874.649 kb on - strand, within Sama_0713at 874.657 kb on - strand, within Sama_0713at 874.691 kb on + strand, within Sama_0713

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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871,892 + +0.8
871,892 + -0.3
871,892 + -0.2
871,892 + -0.7
871,906 + +1.9
871,907 - -0.3
871,922 + -0.2
871,923 - +0.3
871,963 + -1.2
871,963 + +1.2
872,096 + Sama_0709 0.13 -0.2
872,096 + Sama_0709 0.13 +0.4
872,097 - Sama_0709 0.13 -0.4
872,227 + Sama_0709 0.28 +0.7
872,227 + Sama_0709 0.28 -0.7
872,228 - Sama_0709 0.28 -0.9
872,233 + Sama_0709 0.29 +0.2
872,233 + Sama_0709 0.29 -0.1
872,234 - Sama_0709 0.29 -0.1
872,234 - Sama_0709 0.29 -0.5
872,280 + Sama_0709 0.35 -0.9
872,321 - Sama_0709 0.39 +0.7
872,391 - Sama_0709 0.48 -0.4
872,490 + Sama_0709 0.59 +0.5
872,491 - Sama_0709 0.59 -1.5
872,665 + Sama_0709 0.80 -0.8
872,665 + Sama_0709 0.80 +0.9
872,665 + Sama_0709 0.80 -1.3
872,665 + Sama_0709 0.80 -1.7
872,665 + Sama_0709 0.80 -0.8
872,665 + Sama_0709 0.80 -0.4
872,665 + Sama_0709 0.80 +1.0
872,665 + Sama_0709 0.80 -0.7
872,665 + Sama_0709 0.80 -0.2
872,665 + Sama_0709 0.80 +0.9
872,666 - Sama_0709 0.80 +0.7
872,666 - Sama_0709 0.80 -0.2
872,666 - Sama_0709 0.80 -0.7
872,666 - Sama_0709 0.80 +0.7
872,666 - Sama_0709 0.80 +0.3
872,706 + Sama_0709 0.85 -0.1
872,706 + Sama_0709 0.85 -0.4
872,707 - Sama_0709 0.85 +0.9
872,711 + Sama_0709 0.85 +0.6
872,712 - Sama_0709 0.85 -0.5
872,712 - Sama_0709 0.85 -0.9
872,712 - Sama_0709 0.85 -2.3
872,712 - Sama_0709 0.85 -0.1
872,722 + Sama_0709 0.86 +1.1
872,723 - Sama_0709 0.87 -0.5
872,768 - +0.7
872,799 + +0.6
872,799 + +0.6
872,799 + -0.3
872,799 + -0.7
872,800 - +0.9
872,830 - -0.1
872,835 + -0.4
872,835 + +0.5
872,835 + -0.1
872,835 + +0.9
872,836 - +0.0
872,836 - -1.3
872,870 + +1.2
872,870 + +0.2
872,871 - -1.1
872,871 - -0.3
872,871 - +0.4
872,916 - -0.1
872,947 + Sama_0710 0.12 +1.9
873,009 - Sama_0710 0.19 -1.3
873,009 - Sama_0710 0.19 -1.9
873,035 + Sama_0710 0.22 +0.3
873,035 + Sama_0710 0.22 +0.8
873,036 - Sama_0710 0.22 -0.7
873,036 - Sama_0710 0.22 +0.1
873,047 - Sama_0710 0.23 -0.6
873,066 + Sama_0710 0.25 +0.2
873,075 + Sama_0710 0.27 -0.1
873,080 + Sama_0710 0.27 +0.3
873,080 + Sama_0710 0.27 -0.3
873,080 + Sama_0710 0.27 -0.1
873,080 + Sama_0710 0.27 +0.5
873,081 - Sama_0710 0.27 -0.4
873,101 + Sama_0710 0.30 +0.6
873,101 + Sama_0710 0.30 +0.4
873,101 + Sama_0710 0.30 -0.6
873,102 - Sama_0710 0.30 -1.4
873,102 - Sama_0710 0.30 -0.7
873,102 - Sama_0710 0.30 +0.6
873,102 - Sama_0710 0.30 -0.9
873,102 - Sama_0710 0.30 +0.3
873,102 - Sama_0710 0.30 -0.7
873,102 - Sama_0710 0.30 +0.8
873,102 - Sama_0710 0.30 -1.3
873,142 + Sama_0710 0.34 +0.5
873,143 - Sama_0710 0.34 +0.9
873,143 - Sama_0710 0.34 +0.3
873,143 - Sama_0710 0.34 +1.2
873,143 - Sama_0710 0.34 +0.5
873,143 - Sama_0710 0.34 +0.2
873,177 + Sama_0710 0.38 +0.4
873,178 - Sama_0710 0.38 +1.2
873,188 + Sama_0710 0.40 -0.0
873,188 + Sama_0710 0.40 +0.1
873,188 + Sama_0710 0.40 +0.5
873,188 + Sama_0710 0.40 +0.7
873,189 - Sama_0710 0.40 +0.9
873,189 - Sama_0710 0.40 -0.5
873,189 - Sama_0710 0.40 -1.2
873,189 - Sama_0710 0.40 -0.4
873,246 + Sama_0710 0.46 -1.4
873,247 - Sama_0710 0.46 +1.9
873,253 + Sama_0710 0.47 -0.1
873,254 - Sama_0710 0.47 +0.6
873,290 + Sama_0710 0.51 +0.6
873,291 - Sama_0710 0.52 -0.6
873,291 - Sama_0710 0.52 +0.3
873,395 + Sama_0710 0.64 +0.1
873,424 + Sama_0710 0.67 -0.3
873,425 - Sama_0710 0.67 +0.2
873,471 + Sama_0710 0.72 +0.5
873,471 + Sama_0710 0.72 +0.0
873,472 - Sama_0710 0.72 -0.9
873,472 - Sama_0710 0.72 +0.3
873,472 - Sama_0710 0.72 +0.1
873,482 - Sama_0710 0.74 +0.7
873,482 - Sama_0710 0.74 +1.4
873,482 - Sama_0710 0.74 +2.5
873,536 + Sama_0710 0.80 +0.7
873,536 + Sama_0710 0.80 -0.1
873,537 - Sama_0710 0.80 +1.3
873,635 - +0.7
873,643 + +2.1
873,644 - +0.8
873,761 - Sama_0711 0.14 -0.1
873,761 - Sama_0711 0.14 -0.5
873,761 - Sama_0711 0.14 -0.4
873,761 - Sama_0711 0.14 +0.6
873,879 + Sama_0711 0.49 -0.9
873,880 - Sama_0711 0.49 +0.1
873,880 - Sama_0711 0.49 -0.4
873,929 - Sama_0711 0.63 -0.2
873,982 + Sama_0711 0.79 -0.7
873,982 + Sama_0711 0.79 -0.8
874,040 + +1.1
874,048 + +0.3
874,057 + -0.6
874,102 + Sama_0712 0.12 -1.0
874,103 - Sama_0712 0.12 -0.2
874,103 - Sama_0712 0.12 +0.2
874,103 - Sama_0712 0.12 +0.2
874,103 - Sama_0712 0.12 +0.3
874,103 - Sama_0712 0.12 -0.1
874,118 - Sama_0712 0.15 -0.4
874,147 + Sama_0712 0.21 -1.0
874,147 + Sama_0712 0.21 -0.2
874,147 + Sama_0712 0.21 -0.3
874,148 - Sama_0712 0.22 -2.7
874,148 - Sama_0712 0.22 -0.4
874,179 - Sama_0712 0.28 +0.9
874,180 + Sama_0712 0.28 +0.3
874,180 + Sama_0712 0.28 -0.6
874,180 + Sama_0712 0.28 +0.9
874,180 + Sama_0712 0.28 -0.0
874,180 + Sama_0712 0.28 -2.0
874,181 - Sama_0712 0.28 +0.1
874,215 - Sama_0712 0.35 -0.9
874,244 + Sama_0712 0.41 +0.1
874,244 + Sama_0712 0.41 -0.2
874,245 - Sama_0712 0.42 +0.2
874,245 - Sama_0712 0.42 +0.3
874,245 - Sama_0712 0.42 -0.9
874,277 + Sama_0712 0.48 -1.7
874,277 + Sama_0712 0.48 +1.2
874,277 + Sama_0712 0.48 +0.1
874,277 + Sama_0712 0.48 +0.4
874,277 + Sama_0712 0.48 +0.9
874,277 + Sama_0712 0.48 -0.7
874,277 + Sama_0712 0.48 -0.5
874,277 + Sama_0712 0.48 -2.4
874,278 - Sama_0712 0.48 -0.7
874,278 - Sama_0712 0.48 -1.3
874,278 - Sama_0712 0.48 -0.6
874,278 - Sama_0712 0.48 +0.7
874,278 - Sama_0712 0.48 +0.7
874,278 - Sama_0712 0.48 -0.1
874,329 - Sama_0712 0.59 -0.1
874,361 + Sama_0712 0.65 -0.1
874,361 + Sama_0712 0.65 +0.1
874,361 + Sama_0712 0.65 +0.2
874,361 + Sama_0712 0.65 -0.7
874,361 + Sama_0712 0.65 +0.4
874,362 - Sama_0712 0.66 +0.4
874,362 - Sama_0712 0.66 +0.0
874,429 + Sama_0712 0.79 -2.3
874,430 - Sama_0712 0.80 +0.2
874,455 + Sama_0712 0.85 +0.4
874,455 + Sama_0712 0.85 -0.2
874,456 - Sama_0712 0.85 +0.4
874,520 - -0.2
874,631 + Sama_0713 0.15 -0.5
874,631 + Sama_0713 0.15 +0.9
874,632 - Sama_0713 0.16 -0.1
874,648 + Sama_0713 0.18 +0.8
874,648 + Sama_0713 0.18 +0.4
874,648 + Sama_0713 0.18 -1.2
874,648 + Sama_0713 0.18 -0.7
874,648 + Sama_0713 0.18 -0.1
874,648 + Sama_0713 0.18 +0.2
874,649 - Sama_0713 0.18 +0.3
874,649 - Sama_0713 0.18 +0.3
874,649 - Sama_0713 0.18 -2.3
874,649 - Sama_0713 0.18 -0.1
874,649 - Sama_0713 0.18 -0.1
874,649 - Sama_0713 0.18 -0.5
874,657 - Sama_0713 0.19 -0.7
874,691 + Sama_0713 0.24 -0.1

Or see this region's nucleotide sequence