Strain Fitness in Shewanella oneidensis MR-1 around SO0859

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0858 and SO0859 are separated by 126 nucleotidesSO0859 and SO0860 are separated by 58 nucleotides SO0858: SO0858 - sodium:alanine symporter family protein (NCBI ptt file), at 881,216 to 882,574 SO0858 SO0859: SO0859 - sensory box histidine kinase/response regulator (NCBI ptt file), at 882,701 to 887,998 SO0859 SO0860: SO0860 - response regulator (NCBI ptt file), at 888,057 to 889,076 SO0860 Position (kb) 882 883 884 885 886 887 888Strain fitness (log2 ratio) -1 0 1 2 3at 881.766 kb on + strand, within SO0858at 881.773 kb on - strand, within SO0858at 881.870 kb on - strand, within SO0858at 881.875 kb on - strand, within SO0858at 881.896 kb on - strand, within SO0858at 882.041 kb on + strand, within SO0858at 882.041 kb on + strand, within SO0858at 882.041 kb on + strand, within SO0858at 882.049 kb on - strand, within SO0858at 882.049 kb on - strand, within SO0858at 882.049 kb on - strand, within SO0858at 882.049 kb on - strand, within SO0858at 882.101 kb on + strand, within SO0858at 882.108 kb on - strand, within SO0858at 882.135 kb on + strand, within SO0858at 882.209 kb on + strand, within SO0858at 882.267 kb on - strand, within SO0858at 882.293 kb on - strand, within SO0858at 882.318 kb on + strand, within SO0858at 882.318 kb on + strand, within SO0858at 882.326 kb on - strand, within SO0858at 882.449 kb on + strandat 882.706 kb on - strandat 882.732 kb on + strandat 882.745 kb on - strandat 882.774 kb on + strandat 882.899 kb on - strandat 882.909 kb on - strandat 882.917 kb on - strandat 883.003 kb on + strandat 883.080 kb on + strandat 883.131 kb on + strandat 883.138 kb on + strandat 883.181 kb on - strandat 883.205 kb on - strandat 883.226 kb on + strandat 883.245 kb on + strand, within SO0859at 883.253 kb on + strand, within SO0859at 883.340 kb on - strand, within SO0859at 883.355 kb on + strand, within SO0859at 883.422 kb on - strand, within SO0859at 883.521 kb on + strand, within SO0859at 883.579 kb on - strand, within SO0859at 883.638 kb on + strand, within SO0859at 883.645 kb on - strand, within SO0859at 883.699 kb on - strand, within SO0859at 883.744 kb on + strand, within SO0859at 883.745 kb on + strand, within SO0859at 883.809 kb on + strand, within SO0859at 883.909 kb on + strand, within SO0859at 883.951 kb on + strand, within SO0859at 883.951 kb on + strand, within SO0859at 883.951 kb on + strand, within SO0859at 883.954 kb on - strand, within SO0859at 883.955 kb on + strand, within SO0859at 883.964 kb on - strand, within SO0859at 883.973 kb on + strand, within SO0859at 884.086 kb on - strand, within SO0859at 884.144 kb on - strand, within SO0859at 884.155 kb on + strand, within SO0859at 884.164 kb on + strand, within SO0859at 884.239 kb on + strand, within SO0859at 884.239 kb on + strand, within SO0859at 884.239 kb on + strand, within SO0859at 884.247 kb on - strand, within SO0859at 884.247 kb on - strand, within SO0859at 884.247 kb on - strand, within SO0859at 884.247 kb on - strand, within SO0859at 884.251 kb on + strand, within SO0859at 884.251 kb on + strand, within SO0859at 884.251 kb on + strand, within SO0859at 884.259 kb on - strand, within SO0859at 884.259 kb on - strand, within SO0859at 884.259 kb on - strand, within SO0859at 884.283 kb on - strand, within SO0859at 884.322 kb on + strand, within SO0859at 884.448 kb on + strand, within SO0859at 884.809 kb on + strand, within SO0859at 884.911 kb on + strand, within SO0859at 884.919 kb on - strand, within SO0859at 884.919 kb on - strand, within SO0859at 884.943 kb on - strand, within SO0859at 885.009 kb on + strand, within SO0859at 885.009 kb on - strand, within SO0859at 885.046 kb on + strand, within SO0859at 885.046 kb on + strand, within SO0859at 885.054 kb on - strand, within SO0859at 885.064 kb on - strand, within SO0859at 885.149 kb on - strand, within SO0859at 885.213 kb on + strand, within SO0859at 885.221 kb on - strand, within SO0859at 885.224 kb on + strand, within SO0859at 885.361 kb on + strand, within SO0859at 885.411 kb on - strand, within SO0859at 885.435 kb on + strand, within SO0859at 885.545 kb on + strand, within SO0859at 885.555 kb on + strand, within SO0859at 885.568 kb on + strand, within SO0859at 885.568 kb on + strand, within SO0859at 885.568 kb on + strand, within SO0859at 885.576 kb on - strand, within SO0859at 885.576 kb on - strand, within SO0859at 885.576 kb on - strand, within SO0859at 885.591 kb on + strand, within SO0859at 885.599 kb on - strand, within SO0859at 885.652 kb on + strand, within SO0859at 885.657 kb on + strand, within SO0859at 885.659 kb on + strand, within SO0859at 885.705 kb on + strand, within SO0859at 885.728 kb on + strand, within SO0859at 885.728 kb on - strand, within SO0859at 885.730 kb on + strand, within SO0859at 885.999 kb on + strand, within SO0859at 886.062 kb on - strand, within SO0859at 886.070 kb on + strand, within SO0859at 886.100 kb on - strand, within SO0859at 886.234 kb on - strand, within SO0859at 886.278 kb on + strand, within SO0859at 886.285 kb on - strand, within SO0859at 886.286 kb on - strand, within SO0859at 886.291 kb on + strand, within SO0859at 886.319 kb on + strand, within SO0859at 886.333 kb on + strand, within SO0859at 886.341 kb on - strand, within SO0859at 886.376 kb on - strand, within SO0859at 886.389 kb on + strand, within SO0859at 886.389 kb on + strand, within SO0859at 886.396 kb on - strand, within SO0859at 886.468 kb on - strand, within SO0859at 886.768 kb on + strand, within SO0859at 886.835 kb on + strand, within SO0859at 886.843 kb on + strand, within SO0859at 886.890 kb on + strand, within SO0859at 886.925 kb on + strand, within SO0859at 886.930 kb on + strand, within SO0859at 886.960 kb on + strand, within SO0859at 886.972 kb on + strand, within SO0859at 886.974 kb on + strand, within SO0859at 887.088 kb on - strand, within SO0859at 887.234 kb on + strand, within SO0859at 887.250 kb on - strand, within SO0859at 887.255 kb on + strand, within SO0859at 887.299 kb on + strand, within SO0859at 887.328 kb on + strand, within SO0859at 887.328 kb on + strand, within SO0859at 887.328 kb on + strand, within SO0859at 887.328 kb on + strand, within SO0859at 887.336 kb on - strand, within SO0859at 887.336 kb on - strand, within SO0859at 887.383 kb on + strand, within SO0859at 887.447 kb on + strand, within SO0859at 887.457 kb on - strand, within SO0859at 887.582 kb on + strandat 887.590 kb on - strandat 887.714 kb on + strandat 887.890 kb on - strandat 887.911 kb on + strandat 887.911 kb on + strandat 887.916 kb on + strandat 887.919 kb on - strandat 887.919 kb on - strandat 888.026 kb on - strandat 888.142 kb on - strandat 888.171 kb on + strand, within SO0860at 888.241 kb on + strand, within SO0860at 888.249 kb on - strand, within SO0860at 888.268 kb on - strand, within SO0860at 888.321 kb on - strand, within SO0860at 888.341 kb on - strand, within SO0860at 888.341 kb on - strandat 888.407 kb on - strand, within SO0860at 888.477 kb on - strand, within SO0860at 888.534 kb on + strand, within SO0860at 888.535 kb on - strand, within SO0860at 888.546 kb on + strand, within SO0860at 888.554 kb on - strand, within SO0860at 888.554 kb on - strand, within SO0860at 888.629 kb on + strand, within SO0860at 888.635 kb on + strand, within SO0860at 888.637 kb on - strand, within SO0860at 888.643 kb on - strand, within SO0860at 888.746 kb on - strand, within SO0860at 888.850 kb on - strand, within SO0860at 888.931 kb on + strand, within SO0860at 888.939 kb on - strand, within SO0860at 888.941 kb on + strand, within SO0860at 888.941 kb on + strand, within SO0860at 888.941 kb on + strand, within SO0860at 888.949 kb on - strand, within SO0860at 888.949 kb on - strand, within SO0860at 888.949 kb on - strand, within SO0860at 888.949 kb on - strand, within SO0860at 888.949 kb on - strand, within SO0860

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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881,766 + SO0858 0.40 +1.0
881,773 - SO0858 0.41 +0.6
881,870 - SO0858 0.48 -0.4
881,875 - SO0858 0.48 -0.5
881,896 - SO0858 0.50 -0.1
882,041 + SO0858 0.61 -0.1
882,041 + SO0858 0.61 +1.0
882,041 + SO0858 0.61 +1.1
882,049 - SO0858 0.61 +0.5
882,049 - SO0858 0.61 +0.1
882,049 - SO0858 0.61 -0.2
882,049 - SO0858 0.61 +0.5
882,101 + SO0858 0.65 -0.8
882,108 - SO0858 0.66 +0.5
882,135 + SO0858 0.68 +0.1
882,209 + SO0858 0.73 -0.2
882,267 - SO0858 0.77 +0.1
882,293 - SO0858 0.79 +0.0
882,318 + SO0858 0.81 +0.9
882,318 + SO0858 0.81 +0.1
882,326 - SO0858 0.82 -0.0
882,449 + -0.2
882,706 - +0.3
882,732 + -0.2
882,745 - -0.2
882,774 + -1.0
882,899 - -0.0
882,909 - +0.1
882,917 - +0.2
883,003 + +0.1
883,080 + +0.2
883,131 + -1.5
883,138 + +0.8
883,181 - +0.1
883,205 - +0.6
883,226 + -0.1
883,245 + SO0859 0.10 -0.3
883,253 + SO0859 0.10 +0.3
883,340 - SO0859 0.12 +0.8
883,355 + SO0859 0.12 +1.2
883,422 - SO0859 0.14 +0.6
883,521 + SO0859 0.15 +0.6
883,579 - SO0859 0.17 -0.0
883,638 + SO0859 0.18 +0.8
883,645 - SO0859 0.18 +0.3
883,699 - SO0859 0.19 -0.3
883,744 + SO0859 0.20 +1.0
883,745 + SO0859 0.20 -0.9
883,809 + SO0859 0.21 +0.8
883,909 + SO0859 0.23 +0.3
883,951 + SO0859 0.24 +0.2
883,951 + SO0859 0.24 -0.2
883,951 + SO0859 0.24 +0.3
883,954 - SO0859 0.24 +0.6
883,955 + SO0859 0.24 -0.2
883,964 - SO0859 0.24 +0.1
883,973 + SO0859 0.24 -0.6
884,086 - SO0859 0.26 -1.7
884,144 - SO0859 0.27 +0.2
884,155 + SO0859 0.27 -0.3
884,164 + SO0859 0.28 -0.5
884,239 + SO0859 0.29 +0.2
884,239 + SO0859 0.29 -0.5
884,239 + SO0859 0.29 -0.2
884,247 - SO0859 0.29 -0.3
884,247 - SO0859 0.29 +0.6
884,247 - SO0859 0.29 +0.2
884,247 - SO0859 0.29 +0.1
884,251 + SO0859 0.29 +1.4
884,251 + SO0859 0.29 +0.2
884,251 + SO0859 0.29 -0.1
884,259 - SO0859 0.29 +0.6
884,259 - SO0859 0.29 +0.3
884,259 - SO0859 0.29 -0.4
884,283 - SO0859 0.30 +0.7
884,322 + SO0859 0.31 +1.1
884,448 + SO0859 0.33 +0.1
884,809 + SO0859 0.40 +0.7
884,911 + SO0859 0.42 +0.7
884,919 - SO0859 0.42 +0.8
884,919 - SO0859 0.42 +0.2
884,943 - SO0859 0.42 +0.2
885,009 + SO0859 0.44 +0.0
885,009 - SO0859 0.44 -0.2
885,046 + SO0859 0.44 -0.9
885,046 + SO0859 0.44 -0.7
885,054 - SO0859 0.44 +1.0
885,064 - SO0859 0.45 +0.3
885,149 - SO0859 0.46 +0.2
885,213 + SO0859 0.47 -0.5
885,221 - SO0859 0.48 +0.4
885,224 + SO0859 0.48 +0.4
885,361 + SO0859 0.50 -1.1
885,411 - SO0859 0.51 -1.2
885,435 + SO0859 0.52 +0.6
885,545 + SO0859 0.54 +0.7
885,555 + SO0859 0.54 -0.1
885,568 + SO0859 0.54 +0.0
885,568 + SO0859 0.54 -0.2
885,568 + SO0859 0.54 -0.0
885,576 - SO0859 0.54 -1.2
885,576 - SO0859 0.54 +0.7
885,576 - SO0859 0.54 +0.1
885,591 + SO0859 0.55 -0.5
885,599 - SO0859 0.55 +0.4
885,652 + SO0859 0.56 +0.1
885,657 + SO0859 0.56 -0.4
885,659 + SO0859 0.56 +0.2
885,705 + SO0859 0.57 +0.0
885,728 + SO0859 0.57 -0.3
885,728 - SO0859 0.57 +1.5
885,730 + SO0859 0.57 -0.2
885,999 + SO0859 0.62 +0.0
886,062 - SO0859 0.63 -1.0
886,070 + SO0859 0.64 +1.8
886,100 - SO0859 0.64 +0.4
886,234 - SO0859 0.67 +0.2
886,278 + SO0859 0.68 +1.0
886,285 - SO0859 0.68 -0.1
886,286 - SO0859 0.68 -0.0
886,291 + SO0859 0.68 +0.2
886,319 + SO0859 0.68 +0.2
886,333 + SO0859 0.69 +0.5
886,341 - SO0859 0.69 +0.1
886,376 - SO0859 0.69 -0.1
886,389 + SO0859 0.70 +0.1
886,389 + SO0859 0.70 +1.6
886,396 - SO0859 0.70 -0.3
886,468 - SO0859 0.71 +0.2
886,768 + SO0859 0.77 +0.1
886,835 + SO0859 0.78 +0.5
886,843 + SO0859 0.78 +0.2
886,890 + SO0859 0.79 -0.0
886,925 + SO0859 0.80 -0.5
886,930 + SO0859 0.80 +0.7
886,960 + SO0859 0.80 +0.4
886,972 + SO0859 0.81 +0.1
886,974 + SO0859 0.81 +0.2
887,088 - SO0859 0.83 -0.2
887,234 + SO0859 0.86 +0.1
887,250 - SO0859 0.86 -0.7
887,255 + SO0859 0.86 +0.5
887,299 + SO0859 0.87 +1.3
887,328 + SO0859 0.87 +0.7
887,328 + SO0859 0.87 -0.4
887,328 + SO0859 0.87 +0.5
887,328 + SO0859 0.87 +0.8
887,336 - SO0859 0.87 +0.1
887,336 - SO0859 0.87 +0.0
887,383 + SO0859 0.88 +0.4
887,447 + SO0859 0.90 +0.0
887,457 - SO0859 0.90 +1.6
887,582 + +2.8
887,590 - +0.3
887,714 + +0.5
887,890 - +0.9
887,911 + +0.3
887,911 + +0.2
887,916 + -0.1
887,919 - -0.1
887,919 - +0.6
888,026 - -0.2
888,142 - +0.4
888,171 + SO0860 0.11 -0.1
888,241 + SO0860 0.18 -0.2
888,249 - SO0860 0.19 +0.6
888,268 - SO0860 0.21 +0.1
888,321 - SO0860 0.26 +0.5
888,341 - SO0860 0.28 +0.3
888,341 - +1.5
888,407 - SO0860 0.34 +1.1
888,477 - SO0860 0.41 -0.4
888,534 + SO0860 0.47 +0.0
888,535 - SO0860 0.47 +0.5
888,546 + SO0860 0.48 +0.5
888,554 - SO0860 0.49 +0.3
888,554 - SO0860 0.49 -0.1
888,629 + SO0860 0.56 -0.9
888,635 + SO0860 0.57 -0.1
888,637 - SO0860 0.57 +0.2
888,643 - SO0860 0.57 +0.4
888,746 - SO0860 0.68 +0.6
888,850 - SO0860 0.78 +0.0
888,931 + SO0860 0.86 -0.3
888,939 - SO0860 0.86 +0.7
888,941 + SO0860 0.87 +0.0
888,941 + SO0860 0.87 +1.3
888,941 + SO0860 0.87 +0.5
888,949 - SO0860 0.87 +1.1
888,949 - SO0860 0.87 +0.3
888,949 - SO0860 0.87 +0.1
888,949 - SO0860 0.87 -0.2
888,949 - SO0860 0.87 +0.7

Or see this region's nucleotide sequence