Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06920 and PGA1_c06930 overlap by 11 nucleotides PGA1_c06930 and PGA1_c06940 are separated by 496 nucleotides PGA1_c06940 and PGA1_c06950 are separated by 186 nucleotides PGA1_c06950 and PGA1_c06960 are separated by 99 nucleotides
PGA1_c06920: PGA1_c06920 - hypothetical protein, at 711,835 to 712,371
_c06920
PGA1_c06930: PGA1_c06930 - hypothetical protein, at 712,361 to 712,759
_c06930
PGA1_c06940: PGA1_c06940 - putative adenosylcobalamin(B12)-dependent ribonucleotide reductases, at 713,256 to 715,553
_c06940
PGA1_c06950: PGA1_c06950 - Uncharacterized conserved protein, at 715,740 to 716,171
_c06950
PGA1_c06960: PGA1_c06960 - Uncharacterized protein conserved in bacteria, at 716,271 to 716,588
_c06960
Position (kb) 713
714
715
716 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 712.300 kb on - strand, within PGA1_c06920 at 712.322 kb on - strand at 712.327 kb on + strand at 712.335 kb on - strand at 712.342 kb on - strand at 712.353 kb on + strand at 712.356 kb on + strand at 712.361 kb on - strand at 712.467 kb on + strand, within PGA1_c06930 at 712.475 kb on - strand, within PGA1_c06930 at 712.479 kb on + strand, within PGA1_c06930 at 712.479 kb on + strand, within PGA1_c06930 at 712.479 kb on + strand, within PGA1_c06930 at 712.501 kb on + strand, within PGA1_c06930 at 712.501 kb on + strand, within PGA1_c06930 at 712.549 kb on + strand, within PGA1_c06930 at 712.549 kb on + strand, within PGA1_c06930 at 712.556 kb on + strand, within PGA1_c06930 at 712.639 kb on + strand, within PGA1_c06930 at 712.639 kb on + strand, within PGA1_c06930 at 712.639 kb on + strand, within PGA1_c06930 at 712.647 kb on - strand, within PGA1_c06930 at 712.647 kb on - strand, within PGA1_c06930 at 712.647 kb on - strand, within PGA1_c06930 at 712.647 kb on - strand, within PGA1_c06930 at 712.649 kb on + strand, within PGA1_c06930 at 712.649 kb on + strand, within PGA1_c06930 at 712.650 kb on + strand, within PGA1_c06930 at 712.657 kb on - strand, within PGA1_c06930 at 712.657 kb on - strand, within PGA1_c06930 at 712.700 kb on + strand, within PGA1_c06930 at 712.700 kb on + strand, within PGA1_c06930 at 712.700 kb on + strand, within PGA1_c06930 at 712.700 kb on + strand, within PGA1_c06930 at 712.706 kb on + strand, within PGA1_c06930 at 712.708 kb on - strand, within PGA1_c06930 at 712.714 kb on - strand, within PGA1_c06930 at 712.717 kb on + strand, within PGA1_c06930 at 712.717 kb on + strand, within PGA1_c06930 at 712.717 kb on + strand, within PGA1_c06930 at 712.722 kb on + strand at 712.725 kb on - strand at 712.730 kb on - strand at 712.751 kb on - strand at 712.762 kb on - strand at 712.762 kb on - strand at 712.762 kb on - strand at 712.785 kb on + strand at 712.791 kb on + strand at 712.791 kb on + strand at 712.791 kb on + strand at 712.792 kb on + strand at 712.793 kb on - strand at 712.799 kb on - strand at 712.799 kb on - strand at 712.799 kb on - strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.876 kb on + strand at 712.876 kb on + strand at 712.884 kb on - strand at 712.909 kb on + strand at 712.922 kb on - strand at 712.941 kb on + strand at 712.941 kb on + strand at 712.949 kb on - strand at 712.959 kb on - strand at 712.975 kb on - strand at 712.982 kb on + strand at 712.983 kb on - strand at 713.006 kb on + strand at 713.006 kb on + strand at 713.006 kb on + strand at 713.011 kb on + strand at 713.019 kb on - strand at 713.083 kb on + strand at 713.090 kb on + strand at 713.091 kb on - strand at 713.091 kb on - strand at 713.095 kb on + strand at 713.095 kb on + strand at 713.098 kb on - strand at 713.098 kb on - strand at 713.098 kb on - strand at 713.100 kb on + strand at 713.100 kb on + strand at 713.100 kb on + strand at 713.108 kb on + strand at 713.108 kb on - strand at 713.160 kb on - strand at 713.168 kb on + strand at 713.168 kb on + strand at 713.170 kb on + strand at 713.176 kb on - strand at 713.176 kb on - strand at 713.230 kb on - strand at 713.240 kb on + strand at 713.248 kb on - strand at 713.263 kb on + strand at 713.263 kb on + strand at 713.290 kb on + strand at 713.298 kb on + strand at 713.298 kb on + strand at 713.298 kb on + strand at 713.340 kb on + strand at 713.340 kb on + strand at 713.343 kb on - strand at 713.399 kb on - strand at 713.399 kb on - strand at 713.432 kb on + strand at 713.487 kb on + strand, within PGA1_c06940 at 713.487 kb on + strand, within PGA1_c06940 at 713.503 kb on - strand, within PGA1_c06940 at 713.573 kb on - strand, within PGA1_c06940 at 713.589 kb on + strand, within PGA1_c06940 at 713.592 kb on - strand, within PGA1_c06940 at 713.595 kb on + strand, within PGA1_c06940 at 713.597 kb on - strand, within PGA1_c06940 at 713.642 kb on + strand, within PGA1_c06940 at 713.650 kb on - strand, within PGA1_c06940 at 713.650 kb on - strand, within PGA1_c06940 at 713.650 kb on - strand, within PGA1_c06940 at 713.696 kb on - strand, within PGA1_c06940 at 713.730 kb on + strand, within PGA1_c06940 at 713.731 kb on - strand, within PGA1_c06940 at 713.824 kb on - strand, within PGA1_c06940 at 713.824 kb on - strand, within PGA1_c06940 at 713.861 kb on + strand, within PGA1_c06940 at 713.927 kb on + strand, within PGA1_c06940 at 713.951 kb on + strand, within PGA1_c06940 at 713.951 kb on + strand, within PGA1_c06940 at 713.959 kb on - strand, within PGA1_c06940 at 713.959 kb on - strand, within PGA1_c06940 at 714.018 kb on + strand, within PGA1_c06940 at 714.018 kb on + strand, within PGA1_c06940 at 714.023 kb on + strand, within PGA1_c06940 at 714.026 kb on - strand, within PGA1_c06940 at 714.026 kb on - strand, within PGA1_c06940 at 714.056 kb on + strand, within PGA1_c06940 at 714.056 kb on + strand, within PGA1_c06940 at 714.120 kb on + strand, within PGA1_c06940 at 714.120 kb on + strand, within PGA1_c06940 at 714.120 kb on + strand, within PGA1_c06940 at 714.120 kb on + strand, within PGA1_c06940 at 714.120 kb on + strand, within PGA1_c06940 at 714.120 kb on + strand, within PGA1_c06940 at 714.123 kb on - strand, within PGA1_c06940 at 714.125 kb on + strand, within PGA1_c06940 at 714.128 kb on - strand, within PGA1_c06940 at 714.130 kb on + strand, within PGA1_c06940 at 714.130 kb on + strand, within PGA1_c06940 at 714.135 kb on + strand, within PGA1_c06940 at 714.138 kb on - strand, within PGA1_c06940 at 714.154 kb on - strand, within PGA1_c06940 at 714.192 kb on + strand, within PGA1_c06940 at 714.194 kb on - strand, within PGA1_c06940 at 714.260 kb on + strand, within PGA1_c06940 at 714.260 kb on + strand, within PGA1_c06940 at 714.263 kb on - strand, within PGA1_c06940 at 714.524 kb on + strand, within PGA1_c06940 at 714.556 kb on + strand, within PGA1_c06940 at 714.556 kb on + strand, within PGA1_c06940 at 714.635 kb on + strand, within PGA1_c06940 at 714.692 kb on - strand, within PGA1_c06940 at 714.732 kb on + strand, within PGA1_c06940 at 714.733 kb on + strand, within PGA1_c06940 at 714.733 kb on + strand, within PGA1_c06940 at 714.740 kb on + strand, within PGA1_c06940 at 714.778 kb on + strand, within PGA1_c06940 at 714.854 kb on + strand, within PGA1_c06940 at 714.912 kb on + strand, within PGA1_c06940 at 714.917 kb on + strand, within PGA1_c06940 at 714.925 kb on - strand, within PGA1_c06940 at 714.976 kb on - strand, within PGA1_c06940 at 714.976 kb on - strand, within PGA1_c06940 at 715.017 kb on + strand, within PGA1_c06940 at 715.025 kb on - strand, within PGA1_c06940 at 715.153 kb on - strand, within PGA1_c06940 at 715.220 kb on + strand, within PGA1_c06940 at 715.249 kb on - strand, within PGA1_c06940 at 715.272 kb on + strand, within PGA1_c06940 at 715.280 kb on - strand, within PGA1_c06940 at 715.289 kb on + strand, within PGA1_c06940 at 715.292 kb on - strand, within PGA1_c06940 at 715.292 kb on - strand, within PGA1_c06940 at 715.292 kb on - strand, within PGA1_c06940 at 715.297 kb on - strand, within PGA1_c06940 at 715.307 kb on + strand, within PGA1_c06940 at 715.314 kb on - strand, within PGA1_c06940 at 715.315 kb on - strand, within PGA1_c06940 at 715.324 kb on + strand at 715.422 kb on - strand at 715.445 kb on + strand at 715.514 kb on + strand at 715.596 kb on + strand at 715.596 kb on + strand at 715.596 kb on + strand at 715.596 kb on + strand at 715.604 kb on - strand at 715.604 kb on - strand at 715.673 kb on - strand at 715.696 kb on - strand at 715.778 kb on + strand at 715.840 kb on - strand, within PGA1_c06950 at 715.840 kb on - strand, within PGA1_c06950 at 715.862 kb on + strand, within PGA1_c06950 at 715.862 kb on + strand, within PGA1_c06950 at 715.862 kb on + strand, within PGA1_c06950 at 715.870 kb on - strand, within PGA1_c06950 at 715.870 kb on - strand, within PGA1_c06950 at 715.870 kb on - strand, within PGA1_c06950 at 715.870 kb on - strand, within PGA1_c06950 at 715.888 kb on - strand, within PGA1_c06950 at 715.889 kb on + strand, within PGA1_c06950 at 716.001 kb on + strand, within PGA1_c06950 at 716.039 kb on + strand, within PGA1_c06950 at 716.048 kb on + strand, within PGA1_c06950 at 716.056 kb on - strand, within PGA1_c06950 at 716.071 kb on + strand, within PGA1_c06950 at 716.086 kb on - strand, within PGA1_c06950 at 716.093 kb on - strand, within PGA1_c06950 at 716.104 kb on - strand, within PGA1_c06950 at 716.168 kb on - strand at 716.173 kb on - strand at 716.178 kb on - strand at 716.185 kb on + strand at 716.187 kb on + strand at 716.193 kb on - strand at 716.205 kb on + strand at 716.205 kb on + strand at 716.213 kb on - strand at 716.242 kb on + strand at 716.366 kb on + strand, within PGA1_c06960 at 716.388 kb on - strand, within PGA1_c06960 at 716.390 kb on + strand, within PGA1_c06960 at 716.441 kb on + strand, within PGA1_c06960 at 716.449 kb on - strand, within PGA1_c06960 at 716.449 kb on - strand, within PGA1_c06960 at 716.449 kb on - strand, within PGA1_c06960
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 712,300 - PGA1_c06920 0.87 +0.6 712,322 - -0.4 712,327 + +0.0 712,335 - -0.3 712,342 - -0.7 712,353 + -0.9 712,356 + +0.2 712,361 - -2.8 712,467 + PGA1_c06930 0.27 -0.7 712,475 - PGA1_c06930 0.29 -0.1 712,479 + PGA1_c06930 0.30 -0.4 712,479 + PGA1_c06930 0.30 -0.1 712,479 + PGA1_c06930 0.30 +0.0 712,501 + PGA1_c06930 0.35 +0.4 712,501 + PGA1_c06930 0.35 +0.1 712,549 + PGA1_c06930 0.47 -0.6 712,549 + PGA1_c06930 0.47 +0.2 712,556 + PGA1_c06930 0.49 -0.4 712,639 + PGA1_c06930 0.70 -2.3 712,639 + PGA1_c06930 0.70 +0.9 712,639 + PGA1_c06930 0.70 +0.1 712,647 - PGA1_c06930 0.72 -0.2 712,647 - PGA1_c06930 0.72 -1.4 712,647 - PGA1_c06930 0.72 -0.3 712,647 - PGA1_c06930 0.72 +0.8 712,649 + PGA1_c06930 0.72 +0.1 712,649 + PGA1_c06930 0.72 -0.6 712,650 + PGA1_c06930 0.72 -1.7 712,657 - PGA1_c06930 0.74 -0.3 712,657 - PGA1_c06930 0.74 +0.2 712,700 + PGA1_c06930 0.85 +0.3 712,700 + PGA1_c06930 0.85 +0.0 712,700 + PGA1_c06930 0.85 -0.2 712,700 + PGA1_c06930 0.85 +0.7 712,706 + PGA1_c06930 0.86 -1.0 712,708 - PGA1_c06930 0.87 +0.1 712,714 - PGA1_c06930 0.88 +0.5 712,717 + PGA1_c06930 0.89 +0.4 712,717 + PGA1_c06930 0.89 +0.3 712,717 + PGA1_c06930 0.89 +0.5 712,722 + -0.0 712,725 - +0.7 712,730 - +0.6 712,751 - -0.3 712,762 - -0.6 712,762 - -1.1 712,762 - +0.3 712,785 + -1.0 712,791 + +0.1 712,791 + -0.8 712,791 + -0.1 712,792 + +0.3 712,793 - +1.2 712,799 - -1.0 712,799 - +0.1 712,799 - +1.6 712,838 + -1.2 712,838 + -0.9 712,838 + +0.3 712,838 + -0.8 712,838 + +0.0 712,838 + +0.2 712,838 + +0.5 712,838 + -0.8 712,838 + -1.7 712,838 + +0.5 712,838 + +0.6 712,838 + +1.3 712,838 + +0.1 712,838 + -0.8 712,838 + -0.7 712,838 + -0.6 712,846 - +0.8 712,846 - -0.6 712,846 - +0.0 712,846 - +0.3 712,846 - +1.1 712,846 - -0.1 712,846 - +0.4 712,846 - -0.9 712,846 - +0.8 712,846 - -0.6 712,846 - +0.9 712,846 - +0.1 712,846 - +0.7 712,846 - -1.5 712,876 + -0.7 712,876 + -0.5 712,884 - -1.2 712,909 + +0.2 712,922 - -0.4 712,941 + -1.2 712,941 + +0.6 712,949 - +0.1 712,959 - -0.3 712,975 - -0.3 712,982 + +0.2 712,983 - -0.7 713,006 + -0.7 713,006 + +0.8 713,006 + +0.7 713,011 + +0.2 713,019 - -0.1 713,083 + +0.1 713,090 + -0.5 713,091 - -0.7 713,091 - +0.3 713,095 + -1.3 713,095 + -1.3 713,098 - -1.1 713,098 - -1.9 713,098 - -1.6 713,100 + -0.5 713,100 + -0.4 713,100 + -0.1 713,108 + +0.4 713,108 - +0.3 713,160 - -1.2 713,168 + -0.8 713,168 + -0.3 713,170 + +0.3 713,176 - -0.5 713,176 - +0.5 713,230 - +0.7 713,240 + +0.0 713,248 - +0.4 713,263 + +0.4 713,263 + +1.3 713,290 + +0.1 713,298 + -3.0 713,298 + +0.3 713,298 + -0.6 713,340 + -0.6 713,340 + +0.7 713,343 - -3.2 713,399 - -0.5 713,399 - -0.3 713,432 + +1.1 713,487 + PGA1_c06940 0.10 +0.8 713,487 + PGA1_c06940 0.10 -1.8 713,503 - PGA1_c06940 0.11 -0.8 713,573 - PGA1_c06940 0.14 -0.3 713,589 + PGA1_c06940 0.14 -1.3 713,592 - PGA1_c06940 0.15 -0.0 713,595 + PGA1_c06940 0.15 +0.4 713,597 - PGA1_c06940 0.15 -1.2 713,642 + PGA1_c06940 0.17 +0.4 713,650 - PGA1_c06940 0.17 -1.6 713,650 - PGA1_c06940 0.17 +0.0 713,650 - PGA1_c06940 0.17 -0.4 713,696 - PGA1_c06940 0.19 +0.7 713,730 + PGA1_c06940 0.21 +0.1 713,731 - PGA1_c06940 0.21 -0.4 713,824 - PGA1_c06940 0.25 -0.8 713,824 - PGA1_c06940 0.25 +0.9 713,861 + PGA1_c06940 0.26 +0.7 713,927 + PGA1_c06940 0.29 -1.2 713,951 + PGA1_c06940 0.30 +0.3 713,951 + PGA1_c06940 0.30 -0.4 713,959 - PGA1_c06940 0.31 -0.0 713,959 - PGA1_c06940 0.31 -1.2 714,018 + PGA1_c06940 0.33 -1.1 714,018 + PGA1_c06940 0.33 -0.2 714,023 + PGA1_c06940 0.33 -0.7 714,026 - PGA1_c06940 0.34 -0.6 714,026 - PGA1_c06940 0.34 -1.8 714,056 + PGA1_c06940 0.35 -2.3 714,056 + PGA1_c06940 0.35 -0.0 714,120 + PGA1_c06940 0.38 -0.1 714,120 + PGA1_c06940 0.38 -0.5 714,120 + PGA1_c06940 0.38 +1.6 714,120 + PGA1_c06940 0.38 +0.0 714,120 + PGA1_c06940 0.38 -1.1 714,120 + PGA1_c06940 0.38 -0.1 714,123 - PGA1_c06940 0.38 -0.2 714,125 + PGA1_c06940 0.38 -0.5 714,128 - PGA1_c06940 0.38 -0.2 714,130 + PGA1_c06940 0.38 +0.2 714,130 + PGA1_c06940 0.38 -0.3 714,135 + PGA1_c06940 0.38 +0.1 714,138 - PGA1_c06940 0.38 -0.6 714,154 - PGA1_c06940 0.39 -0.2 714,192 + PGA1_c06940 0.41 -0.5 714,194 - PGA1_c06940 0.41 -3.4 714,260 + PGA1_c06940 0.44 +0.4 714,260 + PGA1_c06940 0.44 -0.4 714,263 - PGA1_c06940 0.44 +0.3 714,524 + PGA1_c06940 0.55 -0.0 714,556 + PGA1_c06940 0.57 -0.1 714,556 + PGA1_c06940 0.57 -1.8 714,635 + PGA1_c06940 0.60 -0.3 714,692 - PGA1_c06940 0.62 -0.7 714,732 + PGA1_c06940 0.64 +0.7 714,733 + PGA1_c06940 0.64 +0.4 714,733 + PGA1_c06940 0.64 -0.3 714,740 + PGA1_c06940 0.65 +0.3 714,778 + PGA1_c06940 0.66 -2.0 714,854 + PGA1_c06940 0.70 -2.5 714,912 + PGA1_c06940 0.72 +0.3 714,917 + PGA1_c06940 0.72 -1.8 714,925 - PGA1_c06940 0.73 -1.2 714,976 - PGA1_c06940 0.75 -0.3 714,976 - PGA1_c06940 0.75 +0.3 715,017 + PGA1_c06940 0.77 -1.5 715,025 - PGA1_c06940 0.77 -1.3 715,153 - PGA1_c06940 0.83 +0.4 715,220 + PGA1_c06940 0.85 -2.2 715,249 - PGA1_c06940 0.87 -1.6 715,272 + PGA1_c06940 0.88 -2.0 715,280 - PGA1_c06940 0.88 +0.3 715,289 + PGA1_c06940 0.88 -2.6 715,292 - PGA1_c06940 0.89 -1.0 715,292 - PGA1_c06940 0.89 +0.2 715,292 - PGA1_c06940 0.89 -0.4 715,297 - PGA1_c06940 0.89 -1.2 715,307 + PGA1_c06940 0.89 -2.1 715,314 - PGA1_c06940 0.90 -1.9 715,315 - PGA1_c06940 0.90 -0.6 715,324 + -1.2 715,422 - -1.6 715,445 + -0.8 715,514 + -2.8 715,596 + -0.4 715,596 + -0.3 715,596 + -0.2 715,596 + +0.3 715,604 - +0.7 715,604 - -0.1 715,673 - +1.0 715,696 - +0.0 715,778 + -0.3 715,840 - PGA1_c06950 0.23 +0.7 715,840 - PGA1_c06950 0.23 +1.1 715,862 + PGA1_c06950 0.28 -0.1 715,862 + PGA1_c06950 0.28 +0.5 715,862 + PGA1_c06950 0.28 -1.2 715,870 - PGA1_c06950 0.30 +0.0 715,870 - PGA1_c06950 0.30 +1.0 715,870 - PGA1_c06950 0.30 +0.5 715,870 - PGA1_c06950 0.30 -2.3 715,888 - PGA1_c06950 0.34 -0.4 715,889 + PGA1_c06950 0.34 +1.2 716,001 + PGA1_c06950 0.60 +0.4 716,039 + PGA1_c06950 0.69 -0.7 716,048 + PGA1_c06950 0.71 +1.3 716,056 - PGA1_c06950 0.73 -0.1 716,071 + PGA1_c06950 0.77 -2.3 716,086 - PGA1_c06950 0.80 -2.6 716,093 - PGA1_c06950 0.82 -0.1 716,104 - PGA1_c06950 0.84 -1.0 716,168 - -1.5 716,173 - +1.2 716,178 - -0.2 716,185 + -1.8 716,187 + +0.1 716,193 - -0.1 716,205 + +0.6 716,205 + -2.6 716,213 - +0.1 716,242 + +0.4 716,366 + PGA1_c06960 0.30 -1.3 716,388 - PGA1_c06960 0.37 +1.3 716,390 + PGA1_c06960 0.37 -1.4 716,441 + PGA1_c06960 0.53 +0.2 716,449 - PGA1_c06960 0.56 -1.6 716,449 - PGA1_c06960 0.56 +1.0 716,449 - PGA1_c06960 0.56 +1.8
Or see this region's nucleotide sequence