Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06390 and PGA1_c06400 are separated by 100 nucleotides PGA1_c06400 and PGA1_c06410 are separated by 9 nucleotides PGA1_c06410 and PGA1_c06420 are separated by 207 nucleotides PGA1_c06420 and PGA1_c06430 are separated by 96 nucleotides
PGA1_c06390: PGA1_c06390 - putative sulfate transporter, at 654,214 to 655,854
_c06390
PGA1_c06400: PGA1_c06400 - putative antibiotic acetyltransferase, at 655,955 to 656,596
_c06400
PGA1_c06410: PGA1_c06410 - Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family, at 656,606 to 657,211
_c06410
PGA1_c06420: PGA1_c06420 - acetyltransferase domain-containing protein, at 657,419 to 657,928
_c06420
PGA1_c06430: PGA1_c06430 - hypothetical protein, at 658,025 to 658,804
_c06430
Position (kb) 656
657
658 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 655.637 kb on + strand, within PGA1_c06390 at 655.648 kb on - strand, within PGA1_c06390 at 655.700 kb on - strand at 655.750 kb on + strand at 655.776 kb on + strand at 655.815 kb on + strand at 655.815 kb on + strand at 655.856 kb on - strand at 655.858 kb on + strand at 655.866 kb on - strand at 655.891 kb on + strand at 655.956 kb on - strand at 656.038 kb on + strand, within PGA1_c06400 at 656.103 kb on + strand, within PGA1_c06400 at 656.103 kb on + strand, within PGA1_c06400 at 656.343 kb on + strand, within PGA1_c06400 at 656.354 kb on + strand, within PGA1_c06400 at 656.497 kb on - strand, within PGA1_c06400 at 656.529 kb on - strand, within PGA1_c06400 at 656.565 kb on - strand at 656.581 kb on + strand at 656.594 kb on - strand at 656.644 kb on + strand at 656.695 kb on + strand, within PGA1_c06410 at 656.761 kb on + strand, within PGA1_c06410 at 656.772 kb on + strand, within PGA1_c06410 at 656.772 kb on + strand, within PGA1_c06410 at 656.790 kb on - strand, within PGA1_c06410 at 656.941 kb on + strand, within PGA1_c06410 at 657.058 kb on + strand, within PGA1_c06410 at 657.058 kb on + strand, within PGA1_c06410 at 657.058 kb on + strand, within PGA1_c06410 at 657.058 kb on + strand, within PGA1_c06410 at 657.058 kb on + strand, within PGA1_c06410 at 657.066 kb on - strand, within PGA1_c06410 at 657.066 kb on - strand, within PGA1_c06410 at 657.193 kb on + strand at 657.201 kb on - strand at 657.273 kb on - strand at 657.299 kb on - strand at 657.299 kb on - strand at 657.301 kb on + strand at 657.309 kb on - strand at 657.309 kb on - strand at 657.372 kb on + strand at 657.411 kb on + strand at 657.441 kb on + strand at 657.468 kb on - strand at 657.521 kb on - strand, within PGA1_c06420 at 657.557 kb on - strand, within PGA1_c06420 at 657.641 kb on - strand, within PGA1_c06420 at 657.641 kb on - strand, within PGA1_c06420 at 657.646 kb on - strand, within PGA1_c06420 at 657.712 kb on - strand, within PGA1_c06420 at 657.714 kb on + strand, within PGA1_c06420 at 657.815 kb on - strand, within PGA1_c06420 at 657.857 kb on - strand, within PGA1_c06420 at 657.862 kb on + strand, within PGA1_c06420 at 657.876 kb on - strand, within PGA1_c06420 at 657.896 kb on - strand at 657.898 kb on + strand at 658.052 kb on + strand at 658.052 kb on + strand at 658.057 kb on + strand at 658.060 kb on - strand at 658.065 kb on - strand at 658.065 kb on - strand at 658.065 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 655,637 + PGA1_c06390 0.87 -0.0 655,648 - PGA1_c06390 0.87 -0.2 655,700 - +0.5 655,750 + +0.5 655,776 + -0.6 655,815 + -0.5 655,815 + +0.8 655,856 - -0.2 655,858 + -0.7 655,866 - +0.7 655,891 + +1.2 655,956 - -0.2 656,038 + PGA1_c06400 0.13 -1.7 656,103 + PGA1_c06400 0.23 +0.3 656,103 + PGA1_c06400 0.23 -0.9 656,343 + PGA1_c06400 0.60 +0.6 656,354 + PGA1_c06400 0.62 +0.5 656,497 - PGA1_c06400 0.84 +0.5 656,529 - PGA1_c06400 0.89 +0.9 656,565 - +0.4 656,581 + -0.3 656,594 - +0.1 656,644 + -0.1 656,695 + PGA1_c06410 0.15 -2.7 656,761 + PGA1_c06410 0.26 +0.3 656,772 + PGA1_c06410 0.27 -0.7 656,772 + PGA1_c06410 0.27 +1.8 656,790 - PGA1_c06410 0.30 +0.7 656,941 + PGA1_c06410 0.55 -0.4 657,058 + PGA1_c06410 0.75 -0.5 657,058 + PGA1_c06410 0.75 -0.4 657,058 + PGA1_c06410 0.75 -0.3 657,058 + PGA1_c06410 0.75 -0.8 657,058 + PGA1_c06410 0.75 -3.4 657,066 - PGA1_c06410 0.76 -0.1 657,066 - PGA1_c06410 0.76 -1.0 657,193 + +0.8 657,201 - +1.4 657,273 - -0.1 657,299 - -0.5 657,299 - -1.2 657,301 + -1.0 657,309 - +1.0 657,309 - +0.1 657,372 + -0.8 657,411 + -0.0 657,441 + -2.7 657,468 - -1.4 657,521 - PGA1_c06420 0.20 -2.5 657,557 - PGA1_c06420 0.27 -3.2 657,641 - PGA1_c06420 0.44 -3.3 657,641 - PGA1_c06420 0.44 -3.4 657,646 - PGA1_c06420 0.45 -2.9 657,712 - PGA1_c06420 0.57 -1.9 657,714 + PGA1_c06420 0.58 -2.9 657,815 - PGA1_c06420 0.78 -3.9 657,857 - PGA1_c06420 0.86 -1.1 657,862 + PGA1_c06420 0.87 -2.5 657,876 - PGA1_c06420 0.90 -2.7 657,896 - -2.7 657,898 + -1.3 658,052 + -0.6 658,052 + -0.1 658,057 + +0.5 658,060 - -0.3 658,065 - +0.5 658,065 - -3.2 658,065 - -0.5
Or see this region's nucleotide sequence