Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35840

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
3,752,095	-		PGA1_c35810	0.80	-1.5
3,752,095	-		PGA1_c35810	0.80	-2.2
3,752,121	+		PGA1_c35810	0.89	-1.1
3,752,131	+				-1.3
3,752,134	+				+0.0
3,752,254	+		PGA1_c35820	0.14	-2.1
3,752,254	-		PGA1_c35820	0.14	-2.9
3,752,277	+		PGA1_c35820	0.20	-0.8
3,752,285	-		PGA1_c35820	0.22	-0.3
3,752,360	+		PGA1_c35820	0.41	-0.5
3,752,395	-		PGA1_c35820	0.50	-0.5
3,752,395	-		PGA1_c35820	0.50	+0.4
3,752,395	-		PGA1_c35820	0.50	-0.6
3,752,397	+		PGA1_c35820	0.50	-1.6
3,752,413	-		PGA1_c35820	0.54	-2.1
3,752,416	+		PGA1_c35820	0.55	+0.0
3,752,418	-		PGA1_c35820	0.56	-0.1
3,752,455	+		PGA1_c35820	0.65	-1.3
3,752,456	+		PGA1_c35820	0.65	-0.4
3,752,470	+		PGA1_c35820	0.69	+1.1
3,752,472	-		PGA1_c35820	0.69	-2.8
3,752,483	+		PGA1_c35820	0.72	-1.7
3,752,483	+		PGA1_c35820	0.72	+0.1
3,752,483	+		PGA1_c35820	0.72	+0.6
3,752,483	+		PGA1_c35820	0.72	-0.9
3,752,483	+		PGA1_c35820	0.72	-3.0
3,752,486	-		PGA1_c35820	0.73	-1.6
3,752,491	-		PGA1_c35820	0.74	+0.3
3,752,491	-		PGA1_c35820	0.74	-2.4
3,752,543	-		PGA1_c35820	0.88	+0.2
3,752,543	-		PGA1_c35820	0.88	-0.9
3,752,602	+				-1.0
3,752,602	+				-0.5
3,752,602	+				+0.0
3,752,610	-				-0.9
3,752,610	-				+0.3
3,752,610	-				-1.7
3,752,617	+				-0.0
3,752,620	-				-0.1
3,752,620	-				-0.9
3,752,625	+				-0.9
3,752,633	-				-0.2
3,752,684	+		PGA1_c35830	0.21	+0.2
3,752,684	+		PGA1_c35830	0.21	-1.0
3,752,692	-		PGA1_c35830	0.23	+0.1
3,752,692	-		PGA1_c35830	0.23	-0.5
3,752,722	+		PGA1_c35830	0.30	-0.9
3,752,764	+		PGA1_c35830	0.41	+1.0
3,752,769	+		PGA1_c35830	0.42	-0.5
3,752,769	+		PGA1_c35830	0.42	-1.8
3,752,769	+		PGA1_c35830	0.42	+0.0
3,752,769	+		PGA1_c35830	0.42	-0.5
3,752,772	-		PGA1_c35830	0.43	-1.8
3,752,772	-		PGA1_c35830	0.43	-1.0
3,752,772	-		PGA1_c35830	0.43	-0.7
3,752,777	-		PGA1_c35830	0.44	-0.3
3,752,777	-		PGA1_c35830	0.44	-0.4
3,752,843	+		PGA1_c35830	0.61	-1.8
3,752,863	+		PGA1_c35830	0.66	-1.1
3,752,863	+		PGA1_c35830	0.66	+0.7
3,752,863	+		PGA1_c35830	0.66	-0.4
3,752,863	+		PGA1_c35830	0.66	-0.7
3,752,871	-		PGA1_c35830	0.68	+0.3
3,752,871	-		PGA1_c35830	0.68	-0.8
3,752,871	-		PGA1_c35830	0.68	-0.1
3,752,905	+		PGA1_c35830	0.77	-0.7
3,752,907	-		PGA1_c35830	0.78	+0.5
3,752,920	+		PGA1_c35830	0.81	+1.1
3,752,931	+		PGA1_c35830	0.84	-1.7
3,752,931	+		PGA1_c35830	0.84	+0.0
3,752,951	+		PGA1_c35830	0.89	-0.3
3,752,999	-				+0.4
3,753,025	+				-0.7
3,753,063	+				-2.3
3,753,063	+				+0.6
3,753,063	+				+0.7
3,753,071	-				+0.1
3,753,071	-				+1.7
3,753,073	+				-0.7
3,753,073	+				-0.4
3,753,073	+				-0.1
3,753,073	-				-1.6
3,753,073	-				-0.7
3,753,073	-				-1.1
3,753,075	+				+0.4
3,753,081	-				-3.7
3,753,081	-				-0.1
3,753,139	+				-1.3
3,753,196	+				+0.1
3,753,330	-		PGA1_c35840	0.19	+0.3
3,753,369	+		PGA1_c35840	0.22	-2.5
3,753,369	+		PGA1_c35840	0.22	-0.7
3,753,420	-		PGA1_c35840	0.25	-1.6
3,753,420	-		PGA1_c35840	0.25	-1.1
3,753,479	-		PGA1_c35840	0.30	+0.1
3,753,518	+		PGA1_c35840	0.33	-0.7
3,753,518	+		PGA1_c35840	0.33	+0.2
3,753,518	+		PGA1_c35840	0.33	-2.4
3,753,581	+		PGA1_c35840	0.38	+0.4
3,753,581	+		PGA1_c35840	0.38	+0.2
3,753,581	+		PGA1_c35840	0.38	-0.4
3,753,581	+		PGA1_c35840	0.38	-2.7
3,753,581	+		PGA1_c35840	0.38	-0.9
3,753,589	-		PGA1_c35840	0.38	-0.5
3,753,589	-		PGA1_c35840	0.38	+0.6
3,753,596	+		PGA1_c35840	0.39	-0.5
3,753,596	+		PGA1_c35840	0.39	+0.6
3,753,604	-		PGA1_c35840	0.39	+0.3
3,753,604	-		PGA1_c35840	0.39	-0.3
3,753,614	+		PGA1_c35840	0.40	-1.6
3,753,614	-		PGA1_c35840	0.40	-0.7
3,753,657	+		PGA1_c35840	0.43	-1.8
3,753,665	-		PGA1_c35840	0.44	-0.8
3,753,696	+		PGA1_c35840	0.46	+0.3
3,753,717	+		PGA1_c35840	0.48	-1.1
3,753,753	-		PGA1_c35840	0.50	+0.4
3,753,779	+		PGA1_c35840	0.52	-1.1
3,753,904	+		PGA1_c35840	0.62	-1.7
3,753,913	-		PGA1_c35840	0.63	-0.2
3,753,940	+		PGA1_c35840	0.65	-1.7
3,753,940	+		PGA1_c35840	0.65	-0.8
3,753,940	+		PGA1_c35840	0.65	-0.1
3,753,948	-		PGA1_c35840	0.65	-0.5
3,753,948	-		PGA1_c35840	0.65	-1.5
3,753,974	-		PGA1_c35840	0.67	-0.4
3,753,978	-		PGA1_c35840	0.67	-0.6
3,753,978	-		PGA1_c35840	0.67	-1.3
3,754,087	-		PGA1_c35840	0.76	-1.0
3,754,095	-		PGA1_c35840	0.76	-1.7
3,754,119	+		PGA1_c35840	0.78	+0.2
3,754,119	+		PGA1_c35840	0.78	-1.8
3,754,151	+		PGA1_c35840	0.80	-0.1
3,754,151	+		PGA1_c35840	0.80	-0.9
3,754,151	+		PGA1_c35840	0.80	-3.3
3,754,159	-		PGA1_c35840	0.81	-0.6
3,754,159	-		PGA1_c35840	0.81	-0.7
3,754,240	+		PGA1_c35840	0.87	-0.5
3,754,240	+		PGA1_c35840	0.87	-1.8
3,754,240	+		PGA1_c35840	0.87	-0.1
3,754,248	-		PGA1_c35840	0.88	-0.5
3,754,248	-		PGA1_c35840	0.88	-0.0
3,754,248	-		PGA1_c35840	0.88	-1.6
3,754,248	-		PGA1_c35840	0.88	-1.7
3,754,257	+		PGA1_c35840	0.88	-0.9
3,754,295	-				+0.4
3,754,295	-				-2.1
3,754,295	-				-1.5
3,754,297	+				-1.3
3,754,302	+				-0.6
3,754,315	-				-0.9
3,754,334	+				-0.7
3,754,342	-				-1.5
3,754,343	+				-0.6
3,754,351	+				-2.6
3,754,351	+				-1.5
3,754,359	-				-0.1
3,754,359	-				-1.6
3,754,411	+				+1.0
3,754,455	-				-0.6
3,754,460	+				+0.5
3,754,513	+				+0.1
3,754,521	-				-0.2
3,754,533	+				-0.4
3,754,560	+				-0.4
3,754,560	+				+0.2
3,754,560	+				+0.2
3,754,560	+				+0.6
3,754,568	-				-0.3
3,754,622	+				+0.1
3,754,635	+				+0.2
3,754,750	-				-0.0
3,754,752	+				-1.2
3,754,755	-				-0.3
3,754,785	+				+0.9
3,754,789	+				+0.6
3,754,794	+				+0.7
3,754,795	+				+0.4
3,754,797	-				+1.2
3,754,800	+				-0.3
3,754,800	+				+0.3
3,754,800	+				-1.0
3,754,800	+				+0.8
3,754,808	-				+0.7
3,754,827	-				-0.3
3,754,832	-				-0.4
3,754,832	-				+1.2
3,754,832	-				+0.5
3,754,895	+				-0.6
3,754,966	-				-0.7
3,754,966	-				+0.1
3,754,968	+				-0.6
3,754,968	+				+1.2
3,754,973	-				-1.0
3,754,973	-				-0.0
3,754,974	-				-1.2
3,754,976	+				-1.5
3,754,978	+				-0.9
3,754,978	-				+1.3
3,754,986	-				-0.6
3,754,986	-				+0.4
3,754,992	+				-0.4
3,754,995	+				+0.8
3,755,000	-				+0.4
3,755,000	-				-0.1
3,755,063	-				+1.1
3,755,072	+				-0.4
3,755,079	+				-0.1
3,755,080	-				-0.3
3,755,087	-				+0.2
3,755,089	+				+0.0
3,755,089	+				-2.8
3,755,097	-				+0.1
3,755,124	+				+0.9
3,755,158	+				+0.0
3,755,158	+				+0.4
3,755,158	+				-0.6
3,755,158	+				-0.3
3,755,166	-				+0.1
3,755,168	+				-0.3
3,755,168	+				-0.3
3,755,168	+				-2.5
3,755,171	+				-2.7
3,755,176	-				-3.8
3,755,176	-				+0.2
3,755,176	-				-0.0
3,755,178	+				+0.4
3,755,178	+				-1.5
3,755,178	+				+0.4
3,755,186	-				+0.8
3,755,186	-				-0.3
3,755,186	-				+0.2
3,755,186	-				+0.4
3,755,186	-				-0.0
3,755,188	+				-2.0
3,755,188	+				-0.4
3,755,188	+				-1.0
3,755,188	+				+0.2
3,755,188	+				+2.3
3,755,188	+				-1.4
3,755,188	+				-0.1
3,755,188	+				-0.8
3,755,191	-				-0.7
3,755,193	+				+0.3
3,755,196	-				-1.1
3,755,196	-				+1.4
3,755,196	-				-0.6
3,755,196	-				+0.7
3,755,196	-				-0.8
3,755,196	-				+0.2
3,755,196	-				-0.1
3,755,196	-				+0.4
3,755,196	-				-0.9
3,755,196	-				-0.1
3,755,196	-				-1.4
3,755,196	-				-0.4
3,755,196	-				-0.4
3,755,196	-				+0.3
3,755,196	-				-1.2
3,755,196	-				+0.1
3,755,196	-				+0.2
3,755,196	-				-0.4
3,755,196	-				+1.6
3,755,196	-				-0.5
3,755,196	-				+0.6
3,755,196	-				+0.2
3,755,196	-				+0.8
3,755,198	+				-1.0
3,755,246	+				-1.1
3,755,246	-				+0.6
3,755,271	-				+0.6
3,755,285	+				+1.4
3,755,293	-		PGA1_c35850	0.11	+0.4
3,755,311	+		PGA1_c35850	0.16	-0.6
3,755,357	+		PGA1_c35850	0.27	-0.1
3,755,359	-		PGA1_c35850	0.28	-1.2
3,755,370	+		PGA1_c35850	0.30	-1.2