Strain Fitness in Marinobacter adhaerens HP15 around HP15_1800

Experiment: m.b. Cobalt chloride 0.32 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1798 and HP15_1799 are separated by 231 nucleotidesHP15_1799 and HP15_1800 are separated by 62 nucleotidesHP15_1800 and HP15_1801 are separated by 4 nucleotides HP15_1798: HP15_1798 - sohB protein, peptidase U7 family, at 1,890,744 to 1,891,805 _1798 HP15_1799: HP15_1799 - sterol-binding domain protein, at 1,892,037 to 1,892,351 _1799 HP15_1800: HP15_1800 - conserved hypothetical protein, membrane, at 1,892,414 to 1,893,061 _1800 HP15_1801: HP15_1801 - methyl-accepting chemotaxis protein, at 1,893,066 to 1,894,771 _1801 Position (kb) 1892 1893 1894Strain fitness (log2 ratio) -1 0 1at 1891.445 kb on + strand, within HP15_1798at 1891.479 kb on + strand, within HP15_1798at 1891.704 kb on + strandat 1892.011 kb on - strandat 1892.098 kb on + strand, within HP15_1799at 1892.105 kb on - strand, within HP15_1799at 1892.105 kb on - strand, within HP15_1799at 1892.105 kb on - strand, within HP15_1799at 1892.140 kb on - strand, within HP15_1799at 1892.203 kb on + strand, within HP15_1799at 1892.211 kb on - strand, within HP15_1799at 1892.213 kb on + strand, within HP15_1799at 1892.283 kb on + strand, within HP15_1799at 1892.336 kb on + strandat 1892.635 kb on - strand, within HP15_1800at 1892.642 kb on + strand, within HP15_1800at 1892.658 kb on - strand, within HP15_1800at 1892.841 kb on - strand, within HP15_1800at 1892.867 kb on - strand, within HP15_1800at 1892.906 kb on + strand, within HP15_1800at 1893.018 kb on - strandat 1893.312 kb on + strand, within HP15_1801at 1893.319 kb on + strand, within HP15_1801at 1893.325 kb on - strand, within HP15_1801at 1893.394 kb on - strand, within HP15_1801at 1893.519 kb on - strand, within HP15_1801at 1893.673 kb on - strand, within HP15_1801at 1893.681 kb on - strand, within HP15_1801at 1893.810 kb on - strand, within HP15_1801at 1893.810 kb on - strand, within HP15_1801at 1893.826 kb on + strand, within HP15_1801at 1893.920 kb on + strand, within HP15_1801at 1893.939 kb on - strand, within HP15_1801at 1893.943 kb on + strand, within HP15_1801at 1894.021 kb on - strand, within HP15_1801

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.32 mM
remove
1,891,445 + HP15_1798 0.66 +0.4
1,891,479 + HP15_1798 0.69 +0.4
1,891,704 + +0.5
1,892,011 - -0.3
1,892,098 + HP15_1799 0.19 -0.6
1,892,105 - HP15_1799 0.22 -0.1
1,892,105 - HP15_1799 0.22 -0.1
1,892,105 - HP15_1799 0.22 +0.5
1,892,140 - HP15_1799 0.33 +0.0
1,892,203 + HP15_1799 0.53 -0.3
1,892,211 - HP15_1799 0.55 +0.4
1,892,213 + HP15_1799 0.56 +0.1
1,892,283 + HP15_1799 0.78 -0.1
1,892,336 + -0.1
1,892,635 - HP15_1800 0.34 +0.5
1,892,642 + HP15_1800 0.35 +0.6
1,892,658 - HP15_1800 0.38 +0.5
1,892,841 - HP15_1800 0.66 +0.3
1,892,867 - HP15_1800 0.70 +0.1
1,892,906 + HP15_1800 0.76 +0.2
1,893,018 - -0.6
1,893,312 + HP15_1801 0.14 +0.1
1,893,319 + HP15_1801 0.15 -0.1
1,893,325 - HP15_1801 0.15 +0.1
1,893,394 - HP15_1801 0.19 +1.3
1,893,519 - HP15_1801 0.27 +0.3
1,893,673 - HP15_1801 0.36 +1.1
1,893,681 - HP15_1801 0.36 +0.3
1,893,810 - HP15_1801 0.44 -0.1
1,893,810 - HP15_1801 0.44 +0.2
1,893,826 + HP15_1801 0.45 -0.7
1,893,920 + HP15_1801 0.50 +0.1
1,893,939 - HP15_1801 0.51 +0.7
1,893,943 + HP15_1801 0.51 +0.3
1,894,021 - HP15_1801 0.56 +0.3

Or see this region's nucleotide sequence