Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09650

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09620 and PGA1_c09630 are separated by 58 nucleotidesPGA1_c09630 and PGA1_c09640 overlap by 4 nucleotidesPGA1_c09640 and PGA1_c09650 are separated by 183 nucleotidesPGA1_c09650 and PGA1_c09660 are separated by 286 nucleotides PGA1_c09620: PGA1_c09620 - UDP-N-acetylmuramate--L-alanine ligase MurC, at 986,891 to 988,288 _c09620 PGA1_c09630: PGA1_c09630 - Protein of unknown function (DUF2484)., at 988,347 to 988,601 _c09630 PGA1_c09640: PGA1_c09640 - Protein of unknown function (DUF2484)., at 988,598 to 988,849 _c09640 PGA1_c09650: PGA1_c09650 - UDP-N-acetylenolpyruvoylglucosamine reductase MurB, at 989,033 to 989,956 _c09650 PGA1_c09660: PGA1_c09660 - D-alanine--D-alanine ligase Ddl, at 990,243 to 991,163 _c09660 Position (kb) 989 990Strain fitness (log2 ratio) -3 -2 -1 0 1at 988.297 kb on + strandat 988.347 kb on + strandat 988.387 kb on + strand, within PGA1_c09630at 988.623 kb on + strandat 988.631 kb on - strand, within PGA1_c09640at 988.648 kb on + strand, within PGA1_c09640at 988.658 kb on + strand, within PGA1_c09640at 988.751 kb on + strand, within PGA1_c09640at 988.771 kb on - strand, within PGA1_c09640at 988.790 kb on - strand, within PGA1_c09640at 988.792 kb on + strand, within PGA1_c09640at 988.800 kb on - strand, within PGA1_c09640at 988.811 kb on - strand, within PGA1_c09640at 988.899 kb on + strandat 988.942 kb on + strandat 988.942 kb on + strandat 988.950 kb on - strandat 989.009 kb on - strandat 989.932 kb on + strandat 989.992 kb on + strandat 990.088 kb on - strandat 990.088 kb on - strandat 990.110 kb on + strandat 990.110 kb on + strandat 990.110 kb on + strandat 990.110 kb on + strandat 990.110 kb on + strandat 990.110 kb on + strandat 990.110 kb on + strandat 990.110 kb on + strandat 990.110 kb on + strandat 990.110 kb on + strandat 990.117 kb on + strandat 990.118 kb on - strandat 990.118 kb on - strandat 990.118 kb on - strandat 990.118 kb on - strandat 990.118 kb on - strandat 990.118 kb on - strandat 990.118 kb on - strandat 990.118 kb on - strandat 990.127 kb on + strandat 990.162 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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988,297 + -1.5
988,347 + +0.6
988,387 + PGA1_c09630 0.16 -1.8
988,623 + -1.7
988,631 - PGA1_c09640 0.13 -1.4
988,648 + PGA1_c09640 0.20 -1.0
988,658 + PGA1_c09640 0.24 -0.8
988,751 + PGA1_c09640 0.61 -1.5
988,771 - PGA1_c09640 0.69 -0.1
988,790 - PGA1_c09640 0.76 -2.6
988,792 + PGA1_c09640 0.77 -0.2
988,800 - PGA1_c09640 0.80 -2.3
988,811 - PGA1_c09640 0.85 -1.4
988,899 + -2.1
988,942 + +0.0
988,942 + -0.6
988,950 - -1.1
989,009 - -0.3
989,932 + -3.3
989,992 + -2.6
990,088 - -1.3
990,088 - -1.4
990,110 + -2.2
990,110 + -1.1
990,110 + -2.2
990,110 + -1.2
990,110 + -2.3
990,110 + -2.1
990,110 + -1.2
990,110 + -0.8
990,110 + +0.7
990,110 + -0.4
990,117 + -0.6
990,118 - -2.7
990,118 - -1.2
990,118 - -2.1
990,118 - -3.7
990,118 - -3.4
990,118 - -2.8
990,118 - -1.4
990,118 - -1.5
990,127 + -1.5
990,162 + +0.3

Or see this region's nucleotide sequence