Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07360 and PGA1_c07370 overlap by 4 nucleotides PGA1_c07370 and PGA1_c07380 overlap by 1 nucleotides PGA1_c07380 and PGA1_c07390 overlap by 4 nucleotides
PGA1_c07360: PGA1_c07360 - 2-dehydro-3-deoxygalactonokinase DgoK, at 758,131 to 759,108
_c07360
PGA1_c07370: PGA1_c07370 - putative short chain dehydrogenase, at 759,105 to 759,875
_c07370
PGA1_c07380: PGA1_c07380 - dihydroxy-acid dehydratase IlvD, at 759,875 to 761,590
_c07380
PGA1_c07390: PGA1_c07390 - alpha-galactosidase RafA, at 761,587 to 763,686
_c07390
Position (kb) 759
760
761
762 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 758.892 kb on - strand, within PGA1_c07360 at 758.938 kb on - strand, within PGA1_c07360 at 758.964 kb on + strand, within PGA1_c07360 at 758.969 kb on + strand, within PGA1_c07360 at 759.011 kb on - strand at 759.057 kb on + strand at 759.057 kb on + strand at 759.064 kb on - strand at 759.116 kb on + strand at 759.122 kb on - strand at 759.148 kb on - strand at 759.175 kb on + strand at 759.180 kb on + strand at 759.265 kb on - strand, within PGA1_c07370 at 759.284 kb on + strand, within PGA1_c07370 at 759.292 kb on - strand, within PGA1_c07370 at 759.316 kb on + strand, within PGA1_c07370 at 759.316 kb on + strand, within PGA1_c07370 at 759.323 kb on - strand, within PGA1_c07370 at 759.324 kb on - strand, within PGA1_c07370 at 759.324 kb on - strand, within PGA1_c07370 at 759.324 kb on - strand, within PGA1_c07370 at 759.337 kb on + strand, within PGA1_c07370 at 759.357 kb on + strand, within PGA1_c07370 at 759.365 kb on - strand, within PGA1_c07370 at 759.393 kb on + strand, within PGA1_c07370 at 759.393 kb on + strand, within PGA1_c07370 at 759.393 kb on + strand, within PGA1_c07370 at 759.401 kb on - strand, within PGA1_c07370 at 759.401 kb on - strand, within PGA1_c07370 at 759.401 kb on - strand, within PGA1_c07370 at 759.401 kb on - strand, within PGA1_c07370 at 759.401 kb on - strand, within PGA1_c07370 at 759.401 kb on - strand, within PGA1_c07370 at 759.403 kb on + strand, within PGA1_c07370 at 759.411 kb on + strand, within PGA1_c07370 at 759.411 kb on - strand, within PGA1_c07370 at 759.411 kb on - strand, within PGA1_c07370 at 759.411 kb on - strand, within PGA1_c07370 at 759.430 kb on - strand, within PGA1_c07370 at 759.467 kb on - strand, within PGA1_c07370 at 759.504 kb on + strand, within PGA1_c07370 at 759.527 kb on - strand, within PGA1_c07370 at 759.530 kb on + strand, within PGA1_c07370 at 759.565 kb on - strand, within PGA1_c07370 at 759.565 kb on - strand, within PGA1_c07370 at 759.575 kb on - strand, within PGA1_c07370 at 759.602 kb on - strand, within PGA1_c07370 at 759.729 kb on + strand, within PGA1_c07370 at 759.744 kb on - strand, within PGA1_c07370 at 759.873 kb on + strand at 759.881 kb on + strand at 759.905 kb on - strand at 760.069 kb on + strand, within PGA1_c07380 at 760.080 kb on + strand, within PGA1_c07380 at 760.102 kb on + strand, within PGA1_c07380 at 760.106 kb on - strand, within PGA1_c07380 at 760.108 kb on + strand, within PGA1_c07380 at 760.108 kb on + strand, within PGA1_c07380 at 760.111 kb on - strand, within PGA1_c07380 at 760.168 kb on - strand, within PGA1_c07380 at 760.168 kb on - strand, within PGA1_c07380 at 760.178 kb on + strand, within PGA1_c07380 at 760.208 kb on + strand, within PGA1_c07380 at 760.346 kb on + strand, within PGA1_c07380 at 760.357 kb on + strand, within PGA1_c07380 at 760.379 kb on + strand, within PGA1_c07380 at 760.452 kb on - strand, within PGA1_c07380 at 760.490 kb on - strand, within PGA1_c07380 at 760.495 kb on + strand, within PGA1_c07380 at 760.547 kb on + strand, within PGA1_c07380 at 760.589 kb on - strand, within PGA1_c07380 at 760.648 kb on - strand, within PGA1_c07380 at 760.716 kb on - strand, within PGA1_c07380 at 760.716 kb on - strand, within PGA1_c07380 at 760.737 kb on - strand, within PGA1_c07380 at 760.792 kb on + strand, within PGA1_c07380 at 760.832 kb on + strand, within PGA1_c07380 at 760.848 kb on - strand, within PGA1_c07380 at 760.916 kb on + strand, within PGA1_c07380 at 760.916 kb on + strand, within PGA1_c07380 at 761.027 kb on + strand, within PGA1_c07380 at 761.027 kb on + strand, within PGA1_c07380 at 761.027 kb on + strand, within PGA1_c07380 at 761.123 kb on + strand, within PGA1_c07380 at 761.123 kb on - strand, within PGA1_c07380 at 761.142 kb on - strand, within PGA1_c07380 at 761.155 kb on + strand, within PGA1_c07380 at 761.155 kb on + strand, within PGA1_c07380 at 761.155 kb on + strand, within PGA1_c07380 at 761.157 kb on - strand, within PGA1_c07380 at 761.163 kb on - strand, within PGA1_c07380 at 761.199 kb on + strand, within PGA1_c07380 at 761.199 kb on + strand, within PGA1_c07380 at 761.204 kb on - strand, within PGA1_c07380 at 761.207 kb on - strand, within PGA1_c07380 at 761.212 kb on - strand, within PGA1_c07380 at 761.245 kb on - strand, within PGA1_c07380 at 761.250 kb on - strand, within PGA1_c07380 at 761.429 kb on + strand at 761.443 kb on + strand at 761.456 kb on - strand at 761.530 kb on + strand at 761.593 kb on - strand at 761.593 kb on - strand at 761.629 kb on + strand at 761.630 kb on + strand at 761.635 kb on + strand at 761.637 kb on - strand at 761.638 kb on - strand at 761.638 kb on - strand at 761.638 kb on - strand at 761.638 kb on - strand at 761.718 kb on + strand at 761.760 kb on + strand at 761.800 kb on - strand, within PGA1_c07390 at 761.834 kb on - strand, within PGA1_c07390 at 761.849 kb on + strand, within PGA1_c07390 at 761.857 kb on - strand, within PGA1_c07390 at 761.905 kb on - strand, within PGA1_c07390 at 761.953 kb on - strand, within PGA1_c07390 at 761.955 kb on + strand, within PGA1_c07390 at 762.033 kb on - strand, within PGA1_c07390 at 762.046 kb on - strand, within PGA1_c07390 at 762.069 kb on + strand, within PGA1_c07390 at 762.077 kb on - strand, within PGA1_c07390 at 762.168 kb on + strand, within PGA1_c07390 at 762.271 kb on - strand, within PGA1_c07390 at 762.292 kb on - strand, within PGA1_c07390 at 762.313 kb on - strand, within PGA1_c07390 at 762.322 kb on + strand, within PGA1_c07390 at 762.322 kb on + strand, within PGA1_c07390 at 762.322 kb on + strand, within PGA1_c07390 at 762.330 kb on - strand, within PGA1_c07390 at 762.364 kb on + strand, within PGA1_c07390 at 762.372 kb on - strand, within PGA1_c07390 at 762.389 kb on + strand, within PGA1_c07390 at 762.397 kb on - strand, within PGA1_c07390 at 762.407 kb on + strand, within PGA1_c07390 at 762.412 kb on + strand, within PGA1_c07390 at 762.420 kb on - strand, within PGA1_c07390 at 762.457 kb on + strand, within PGA1_c07390 at 762.457 kb on + strand, within PGA1_c07390 at 762.458 kb on + strand, within PGA1_c07390 at 762.463 kb on + strand, within PGA1_c07390 at 762.466 kb on - strand, within PGA1_c07390 at 762.471 kb on - strand, within PGA1_c07390 at 762.486 kb on - strand, within PGA1_c07390 at 762.494 kb on + strand, within PGA1_c07390 at 762.526 kb on + strand, within PGA1_c07390 at 762.537 kb on + strand, within PGA1_c07390 at 762.545 kb on - strand, within PGA1_c07390 at 762.545 kb on - strand, within PGA1_c07390 at 762.577 kb on - strand, within PGA1_c07390 at 762.586 kb on - strand, within PGA1_c07390
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 758,892 - PGA1_c07360 0.78 +0.1 758,938 - PGA1_c07360 0.83 -2.2 758,964 + PGA1_c07360 0.85 +0.4 758,969 + PGA1_c07360 0.86 +0.3 759,011 - +0.8 759,057 + -2.9 759,057 + +1.8 759,064 - +1.5 759,116 + +0.8 759,122 - -1.2 759,148 - -0.3 759,175 + +0.1 759,180 + -0.0 759,265 - PGA1_c07370 0.21 +0.1 759,284 + PGA1_c07370 0.23 -1.1 759,292 - PGA1_c07370 0.24 -0.8 759,316 + PGA1_c07370 0.27 +1.1 759,316 + PGA1_c07370 0.27 -0.6 759,323 - PGA1_c07370 0.28 -1.5 759,324 - PGA1_c07370 0.28 +0.2 759,324 - PGA1_c07370 0.28 -1.0 759,324 - PGA1_c07370 0.28 -1.8 759,337 + PGA1_c07370 0.30 +2.3 759,357 + PGA1_c07370 0.33 -2.8 759,365 - PGA1_c07370 0.34 -0.2 759,393 + PGA1_c07370 0.37 -0.2 759,393 + PGA1_c07370 0.37 -0.2 759,393 + PGA1_c07370 0.37 -1.1 759,401 - PGA1_c07370 0.38 -1.6 759,401 - PGA1_c07370 0.38 -1.9 759,401 - PGA1_c07370 0.38 +0.6 759,401 - PGA1_c07370 0.38 -0.9 759,401 - PGA1_c07370 0.38 +0.4 759,401 - PGA1_c07370 0.38 +0.1 759,403 + PGA1_c07370 0.39 -1.6 759,411 + PGA1_c07370 0.40 -0.3 759,411 - PGA1_c07370 0.40 -1.7 759,411 - PGA1_c07370 0.40 +1.2 759,411 - PGA1_c07370 0.40 -0.7 759,430 - PGA1_c07370 0.42 +0.4 759,467 - PGA1_c07370 0.47 +0.3 759,504 + PGA1_c07370 0.52 -1.7 759,527 - PGA1_c07370 0.55 +0.3 759,530 + PGA1_c07370 0.55 -1.1 759,565 - PGA1_c07370 0.60 -0.3 759,565 - PGA1_c07370 0.60 -2.5 759,575 - PGA1_c07370 0.61 -0.2 759,602 - PGA1_c07370 0.64 -2.1 759,729 + PGA1_c07370 0.81 +0.1 759,744 - PGA1_c07370 0.83 +0.9 759,873 + +1.4 759,881 + +0.1 759,905 - -0.2 760,069 + PGA1_c07380 0.11 -1.7 760,080 + PGA1_c07380 0.12 +0.2 760,102 + PGA1_c07380 0.13 +1.5 760,106 - PGA1_c07380 0.13 +0.3 760,108 + PGA1_c07380 0.14 +1.5 760,108 + PGA1_c07380 0.14 +1.2 760,111 - PGA1_c07380 0.14 -2.0 760,168 - PGA1_c07380 0.17 -0.1 760,168 - PGA1_c07380 0.17 +1.2 760,178 + PGA1_c07380 0.18 -1.1 760,208 + PGA1_c07380 0.19 -1.6 760,346 + PGA1_c07380 0.27 -1.3 760,357 + PGA1_c07380 0.28 -0.0 760,379 + PGA1_c07380 0.29 +1.2 760,452 - PGA1_c07380 0.34 +0.7 760,490 - PGA1_c07380 0.36 +0.6 760,495 + PGA1_c07380 0.36 +0.3 760,547 + PGA1_c07380 0.39 +0.1 760,589 - PGA1_c07380 0.42 -0.0 760,648 - PGA1_c07380 0.45 -2.2 760,716 - PGA1_c07380 0.49 +1.8 760,716 - PGA1_c07380 0.49 +0.2 760,737 - PGA1_c07380 0.50 +0.9 760,792 + PGA1_c07380 0.53 +0.0 760,832 + PGA1_c07380 0.56 +0.3 760,848 - PGA1_c07380 0.57 -1.2 760,916 + PGA1_c07380 0.61 -2.6 760,916 + PGA1_c07380 0.61 -3.3 761,027 + PGA1_c07380 0.67 -1.1 761,027 + PGA1_c07380 0.67 -0.9 761,027 + PGA1_c07380 0.67 +1.4 761,123 + PGA1_c07380 0.73 -0.4 761,123 - PGA1_c07380 0.73 -0.2 761,142 - PGA1_c07380 0.74 +0.0 761,155 + PGA1_c07380 0.75 +0.1 761,155 + PGA1_c07380 0.75 +0.3 761,155 + PGA1_c07380 0.75 -2.8 761,157 - PGA1_c07380 0.75 +0.2 761,163 - PGA1_c07380 0.75 -0.4 761,199 + PGA1_c07380 0.77 +0.7 761,199 + PGA1_c07380 0.77 -0.3 761,204 - PGA1_c07380 0.77 +0.1 761,207 - PGA1_c07380 0.78 +0.2 761,212 - PGA1_c07380 0.78 -0.9 761,245 - PGA1_c07380 0.80 +0.4 761,250 - PGA1_c07380 0.80 -0.1 761,429 + -1.2 761,443 + -1.4 761,456 - -0.2 761,530 + +0.1 761,593 - -1.0 761,593 - +0.2 761,629 + +0.4 761,630 + -0.8 761,635 + -1.1 761,637 - -0.3 761,638 - -2.9 761,638 - -1.1 761,638 - +0.8 761,638 - -0.6 761,718 + -0.7 761,760 + +0.2 761,800 - PGA1_c07390 0.10 -1.4 761,834 - PGA1_c07390 0.12 +0.2 761,849 + PGA1_c07390 0.12 -0.5 761,857 - PGA1_c07390 0.13 -0.7 761,905 - PGA1_c07390 0.15 -1.8 761,953 - PGA1_c07390 0.17 -0.4 761,955 + PGA1_c07390 0.18 +1.7 762,033 - PGA1_c07390 0.21 -0.6 762,046 - PGA1_c07390 0.22 +0.2 762,069 + PGA1_c07390 0.23 +1.2 762,077 - PGA1_c07390 0.23 +1.0 762,168 + PGA1_c07390 0.28 -1.6 762,271 - PGA1_c07390 0.33 -0.6 762,292 - PGA1_c07390 0.34 -0.9 762,313 - PGA1_c07390 0.35 -0.7 762,322 + PGA1_c07390 0.35 -0.5 762,322 + PGA1_c07390 0.35 -0.9 762,322 + PGA1_c07390 0.35 +0.1 762,330 - PGA1_c07390 0.35 +1.1 762,364 + PGA1_c07390 0.37 +0.4 762,372 - PGA1_c07390 0.37 -0.7 762,389 + PGA1_c07390 0.38 -0.7 762,397 - PGA1_c07390 0.39 -0.3 762,407 + PGA1_c07390 0.39 +0.4 762,412 + PGA1_c07390 0.39 -1.7 762,420 - PGA1_c07390 0.40 -1.1 762,457 + PGA1_c07390 0.41 -0.6 762,457 + PGA1_c07390 0.41 -0.4 762,458 + PGA1_c07390 0.41 -2.3 762,463 + PGA1_c07390 0.42 +0.4 762,466 - PGA1_c07390 0.42 -0.6 762,471 - PGA1_c07390 0.42 -0.4 762,486 - PGA1_c07390 0.43 +0.3 762,494 + PGA1_c07390 0.43 +1.0 762,526 + PGA1_c07390 0.45 -2.0 762,537 + PGA1_c07390 0.45 -1.3 762,545 - PGA1_c07390 0.46 -0.8 762,545 - PGA1_c07390 0.46 -2.9 762,577 - PGA1_c07390 0.47 +0.8 762,586 - PGA1_c07390 0.48 +0.2
Or see this region's nucleotide sequence