Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05870 and PGA1_c05880 are separated by 309 nucleotides PGA1_c05880 and PGA1_c05890 are separated by 25 nucleotides PGA1_c05890 and PGA1_c05900 are separated by 114 nucleotides
PGA1_c05870: PGA1_c05870 - holliday junction ATP-dependent DNA helicase RuvB, at 600,592 to 601,641
_c05870
PGA1_c05880: PGA1_c05880 - hypothetical protein, at 601,951 to 602,619
_c05880
PGA1_c05890: PGA1_c05890 - thioesterase domain-containing protein, at 602,645 to 603,031
_c05890
PGA1_c05900: PGA1_c05900 - protein TolQ, at 603,146 to 603,841
_c05900
Position (kb) 601
602
603 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 601.124 kb on - strand, within PGA1_c05870 at 601.351 kb on - strand, within PGA1_c05870 at 601.378 kb on + strand, within PGA1_c05870 at 601.461 kb on - strand, within PGA1_c05870 at 601.593 kb on - strand at 601.595 kb on + strand at 601.595 kb on + strand at 601.603 kb on - strand at 601.603 kb on - strand at 601.686 kb on + strand at 601.723 kb on + strand at 601.770 kb on - strand at 601.770 kb on - strand at 601.780 kb on + strand at 601.780 kb on - strand at 601.803 kb on - strand at 601.877 kb on + strand at 601.910 kb on + strand at 601.910 kb on + strand at 601.918 kb on - strand at 601.986 kb on - strand at 602.118 kb on + strand, within PGA1_c05880 at 602.158 kb on - strand, within PGA1_c05880 at 602.177 kb on + strand, within PGA1_c05880 at 602.195 kb on - strand, within PGA1_c05880 at 602.276 kb on - strand, within PGA1_c05880 at 602.338 kb on + strand, within PGA1_c05880 at 602.383 kb on + strand, within PGA1_c05880 at 602.383 kb on + strand, within PGA1_c05880 at 602.405 kb on - strand, within PGA1_c05880 at 602.500 kb on + strand, within PGA1_c05880 at 602.548 kb on - strand, within PGA1_c05880 at 602.613 kb on + strand at 602.627 kb on + strand at 602.634 kb on + strand at 602.634 kb on + strand at 602.634 kb on + strand at 602.634 kb on + strand at 602.634 kb on + strand at 602.648 kb on + strand at 602.682 kb on + strand at 602.737 kb on + strand, within PGA1_c05890 at 602.753 kb on - strand, within PGA1_c05890 at 602.779 kb on - strand, within PGA1_c05890 at 602.795 kb on + strand, within PGA1_c05890 at 602.799 kb on - strand, within PGA1_c05890 at 602.800 kb on + strand, within PGA1_c05890 at 602.800 kb on + strand, within PGA1_c05890 at 602.827 kb on + strand, within PGA1_c05890 at 602.843 kb on + strand, within PGA1_c05890 at 602.879 kb on - strand, within PGA1_c05890 at 602.887 kb on + strand, within PGA1_c05890 at 602.895 kb on - strand, within PGA1_c05890 at 602.895 kb on - strand, within PGA1_c05890 at 602.895 kb on - strand, within PGA1_c05890 at 602.900 kb on - strand, within PGA1_c05890 at 602.900 kb on - strand, within PGA1_c05890 at 602.900 kb on - strand, within PGA1_c05890 at 603.086 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 601,124 - PGA1_c05870 0.51 -2.8 601,351 - PGA1_c05870 0.72 -1.9 601,378 + PGA1_c05870 0.75 -1.1 601,461 - PGA1_c05870 0.83 -2.8 601,593 - +0.6 601,595 + -0.3 601,595 + -1.0 601,603 - -1.7 601,603 - +0.7 601,686 + -0.5 601,723 + -1.6 601,770 - +0.5 601,770 - +0.1 601,780 + +0.8 601,780 - +0.5 601,803 - -1.6 601,877 + +0.1 601,910 + +0.2 601,910 + -0.1 601,918 - -0.5 601,986 - +0.2 602,118 + PGA1_c05880 0.25 -0.9 602,158 - PGA1_c05880 0.31 +0.7 602,177 + PGA1_c05880 0.34 -1.3 602,195 - PGA1_c05880 0.36 -1.5 602,276 - PGA1_c05880 0.49 -0.0 602,338 + PGA1_c05880 0.58 +2.2 602,383 + PGA1_c05880 0.65 -1.3 602,383 + PGA1_c05880 0.65 +0.3 602,405 - PGA1_c05880 0.68 +0.2 602,500 + PGA1_c05880 0.82 -0.2 602,548 - PGA1_c05880 0.89 +1.0 602,613 + -0.6 602,627 + +0.3 602,634 + -0.2 602,634 + +0.0 602,634 + -1.1 602,634 + +0.5 602,634 + +1.8 602,648 + +0.7 602,682 + +2.4 602,737 + PGA1_c05890 0.24 +1.1 602,753 - PGA1_c05890 0.28 +0.6 602,779 - PGA1_c05890 0.35 +0.6 602,795 + PGA1_c05890 0.39 -1.5 602,799 - PGA1_c05890 0.40 -1.2 602,800 + PGA1_c05890 0.40 -0.2 602,800 + PGA1_c05890 0.40 -1.8 602,827 + PGA1_c05890 0.47 -1.4 602,843 + PGA1_c05890 0.51 -0.8 602,879 - PGA1_c05890 0.60 -1.5 602,887 + PGA1_c05890 0.63 -2.0 602,895 - PGA1_c05890 0.65 +0.5 602,895 - PGA1_c05890 0.65 +0.4 602,895 - PGA1_c05890 0.65 +0.2 602,900 - PGA1_c05890 0.66 -1.7 602,900 - PGA1_c05890 0.66 -1.1 602,900 - PGA1_c05890 0.66 -0.2 603,086 - -1.5
Or see this region's nucleotide sequence