Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04380 and PGA1_c04390 overlap by 4 nucleotides PGA1_c04390 and PGA1_c04400 are separated by 415 nucleotides
PGA1_c04380: PGA1_c04380 - putative colanic acid biosynthesis glycosyltransferase WcaL, at 422,739 to 423,998
_c04380
PGA1_c04390: PGA1_c04390 - Predicted glycosyl transferase, at 423,995 to 425,206
_c04390
PGA1_c04400: PGA1_c04400 - mechanosensitive ion channel-like protein, at 425,622 to 427,991
_c04400
Position (kb) 423
424
425
426 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 423.041 kb on + strand, within PGA1_c04380 at 423.049 kb on - strand, within PGA1_c04380 at 423.065 kb on + strand, within PGA1_c04380 at 423.073 kb on - strand, within PGA1_c04380 at 423.073 kb on - strand, within PGA1_c04380 at 423.238 kb on + strand, within PGA1_c04380 at 423.293 kb on - strand, within PGA1_c04380 at 423.350 kb on + strand, within PGA1_c04380 at 423.350 kb on + strand, within PGA1_c04380 at 423.350 kb on + strand, within PGA1_c04380 at 423.350 kb on + strand, within PGA1_c04380 at 423.358 kb on - strand, within PGA1_c04380 at 423.394 kb on + strand, within PGA1_c04380 at 423.394 kb on + strand, within PGA1_c04380 at 423.394 kb on + strand, within PGA1_c04380 at 423.397 kb on - strand, within PGA1_c04380 at 423.451 kb on + strand, within PGA1_c04380 at 423.499 kb on + strand, within PGA1_c04380 at 423.499 kb on + strand, within PGA1_c04380 at 423.499 kb on + strand, within PGA1_c04380 at 423.529 kb on + strand, within PGA1_c04380 at 423.534 kb on + strand, within PGA1_c04380 at 423.537 kb on - strand, within PGA1_c04380 at 423.585 kb on - strand, within PGA1_c04380 at 423.585 kb on - strand, within PGA1_c04380 at 423.645 kb on - strand, within PGA1_c04380 at 423.645 kb on - strand, within PGA1_c04380 at 423.650 kb on - strand, within PGA1_c04380 at 423.650 kb on - strand, within PGA1_c04380 at 423.650 kb on - strand, within PGA1_c04380 at 423.650 kb on - strand, within PGA1_c04380 at 423.733 kb on + strand, within PGA1_c04380 at 423.739 kb on + strand, within PGA1_c04380 at 423.741 kb on - strand, within PGA1_c04380 at 423.851 kb on - strand, within PGA1_c04380 at 423.876 kb on + strand at 423.882 kb on + strand at 423.900 kb on + strand at 423.940 kb on - strand at 423.940 kb on - strand at 423.940 kb on - strand at 424.055 kb on + strand at 424.095 kb on + strand at 424.268 kb on + strand, within PGA1_c04390 at 424.355 kb on + strand, within PGA1_c04390 at 424.370 kb on - strand, within PGA1_c04390 at 424.494 kb on + strand, within PGA1_c04390 at 424.548 kb on - strand, within PGA1_c04390 at 424.560 kb on + strand, within PGA1_c04390 at 424.568 kb on - strand, within PGA1_c04390 at 424.573 kb on + strand, within PGA1_c04390 at 424.606 kb on - strand, within PGA1_c04390 at 424.621 kb on + strand, within PGA1_c04390 at 424.629 kb on - strand, within PGA1_c04390 at 424.629 kb on - strand, within PGA1_c04390 at 424.779 kb on + strand, within PGA1_c04390 at 424.821 kb on - strand, within PGA1_c04390 at 424.891 kb on + strand, within PGA1_c04390 at 424.899 kb on + strand, within PGA1_c04390 at 424.912 kb on - strand, within PGA1_c04390 at 424.963 kb on + strand, within PGA1_c04390 at 425.044 kb on + strand, within PGA1_c04390 at 425.055 kb on + strand, within PGA1_c04390 at 425.063 kb on - strand, within PGA1_c04390 at 425.143 kb on - strand at 425.189 kb on - strand at 425.334 kb on + strand at 425.347 kb on + strand at 425.348 kb on - strand at 425.360 kb on - strand at 425.360 kb on - strand at 425.360 kb on - strand at 425.362 kb on + strand at 425.377 kb on + strand at 425.377 kb on + strand at 425.377 kb on + strand at 425.377 kb on + strand at 425.377 kb on + strand at 425.385 kb on - strand at 425.385 kb on - strand at 425.395 kb on - strand at 425.439 kb on + strand at 425.447 kb on - strand at 425.447 kb on - strand at 425.448 kb on - strand at 425.469 kb on - strand at 425.513 kb on + strand at 425.513 kb on + strand at 425.521 kb on - strand at 425.534 kb on + strand at 425.542 kb on - strand at 425.608 kb on + strand at 425.698 kb on + strand at 425.698 kb on + strand at 425.699 kb on - strand at 425.706 kb on - strand at 425.706 kb on - strand at 425.716 kb on - strand at 425.765 kb on + strand at 425.797 kb on + strand at 425.829 kb on - strand at 425.840 kb on + strand at 425.853 kb on - strand at 425.891 kb on - strand, within PGA1_c04400 at 425.899 kb on + strand, within PGA1_c04400 at 425.904 kb on + strand, within PGA1_c04400 at 425.904 kb on + strand, within PGA1_c04400 at 425.904 kb on + strand, within PGA1_c04400 at 425.907 kb on - strand, within PGA1_c04400 at 425.912 kb on - strand, within PGA1_c04400 at 425.917 kb on - strand, within PGA1_c04400 at 425.936 kb on + strand, within PGA1_c04400 at 425.936 kb on + strand, within PGA1_c04400 at 425.946 kb on + strand, within PGA1_c04400 at 425.946 kb on + strand, within PGA1_c04400 at 425.946 kb on + strand, within PGA1_c04400 at 425.954 kb on - strand, within PGA1_c04400 at 425.954 kb on - strand, within PGA1_c04400 at 425.954 kb on - strand, within PGA1_c04400 at 425.967 kb on - strand, within PGA1_c04400 at 425.999 kb on - strand, within PGA1_c04400 at 425.999 kb on - strand, within PGA1_c04400 at 426.019 kb on - strand, within PGA1_c04400 at 426.019 kb on - strand, within PGA1_c04400 at 426.024 kb on - strand, within PGA1_c04400 at 426.024 kb on - strand, within PGA1_c04400 at 426.029 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.048 kb on - strand, within PGA1_c04400 at 426.048 kb on - strand, within PGA1_c04400 at 426.082 kb on + strand, within PGA1_c04400 at 426.096 kb on + strand, within PGA1_c04400 at 426.096 kb on + strand, within PGA1_c04400 at 426.096 kb on + strand, within PGA1_c04400 at 426.104 kb on - strand, within PGA1_c04400 at 426.120 kb on + strand, within PGA1_c04400 at 426.127 kb on + strand, within PGA1_c04400 at 426.128 kb on + strand, within PGA1_c04400 at 426.128 kb on - strand, within PGA1_c04400 at 426.162 kb on + strand, within PGA1_c04400 at 426.201 kb on + strand, within PGA1_c04400
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 423,041 + PGA1_c04380 0.24 -0.6 423,049 - PGA1_c04380 0.25 +2.0 423,065 + PGA1_c04380 0.26 +0.3 423,073 - PGA1_c04380 0.27 +1.5 423,073 - PGA1_c04380 0.27 +1.1 423,238 + PGA1_c04380 0.40 +0.3 423,293 - PGA1_c04380 0.44 -0.2 423,350 + PGA1_c04380 0.48 +1.5 423,350 + PGA1_c04380 0.48 +0.6 423,350 + PGA1_c04380 0.48 +0.7 423,350 + PGA1_c04380 0.48 -1.1 423,358 - PGA1_c04380 0.49 +0.8 423,394 + PGA1_c04380 0.52 -3.0 423,394 + PGA1_c04380 0.52 +0.1 423,394 + PGA1_c04380 0.52 -0.7 423,397 - PGA1_c04380 0.52 +1.1 423,451 + PGA1_c04380 0.57 -0.7 423,499 + PGA1_c04380 0.60 +0.8 423,499 + PGA1_c04380 0.60 +0.4 423,499 + PGA1_c04380 0.60 -0.6 423,529 + PGA1_c04380 0.63 +1.3 423,534 + PGA1_c04380 0.63 +0.8 423,537 - PGA1_c04380 0.63 +0.7 423,585 - PGA1_c04380 0.67 +0.1 423,585 - PGA1_c04380 0.67 +2.2 423,645 - PGA1_c04380 0.72 +0.7 423,645 - PGA1_c04380 0.72 +1.0 423,650 - PGA1_c04380 0.72 -0.1 423,650 - PGA1_c04380 0.72 +0.6 423,650 - PGA1_c04380 0.72 +0.1 423,650 - PGA1_c04380 0.72 +0.6 423,733 + PGA1_c04380 0.79 +0.8 423,739 + PGA1_c04380 0.79 -0.2 423,741 - PGA1_c04380 0.80 -1.2 423,851 - PGA1_c04380 0.88 -0.3 423,876 + +1.3 423,882 + +1.1 423,900 + +0.4 423,940 - +0.2 423,940 - -2.0 423,940 - +1.0 424,055 + +1.3 424,095 + +0.5 424,268 + PGA1_c04390 0.23 +0.1 424,355 + PGA1_c04390 0.30 +0.9 424,370 - PGA1_c04390 0.31 +2.3 424,494 + PGA1_c04390 0.41 +1.0 424,548 - PGA1_c04390 0.46 -0.1 424,560 + PGA1_c04390 0.47 +1.4 424,568 - PGA1_c04390 0.47 +1.3 424,573 + PGA1_c04390 0.48 +1.9 424,606 - PGA1_c04390 0.50 +0.5 424,621 + PGA1_c04390 0.52 +1.3 424,629 - PGA1_c04390 0.52 +0.7 424,629 - PGA1_c04390 0.52 +0.6 424,779 + PGA1_c04390 0.65 +0.1 424,821 - PGA1_c04390 0.68 -1.1 424,891 + PGA1_c04390 0.74 -1.1 424,899 + PGA1_c04390 0.75 +0.6 424,912 - PGA1_c04390 0.76 +0.6 424,963 + PGA1_c04390 0.80 -1.5 425,044 + PGA1_c04390 0.87 -0.1 425,055 + PGA1_c04390 0.87 +1.3 425,063 - PGA1_c04390 0.88 +1.1 425,143 - +0.8 425,189 - -0.1 425,334 + +1.5 425,347 + -1.5 425,348 - +1.1 425,360 - +0.1 425,360 - -0.6 425,360 - -0.8 425,362 + -0.6 425,377 + -0.2 425,377 + +1.5 425,377 + +0.4 425,377 + +0.2 425,377 + +0.7 425,385 - -0.3 425,385 - -0.9 425,395 - +1.4 425,439 + -0.1 425,447 - -0.4 425,447 - -0.9 425,448 - +0.1 425,469 - +1.1 425,513 + -3.3 425,513 + +1.1 425,521 - -1.5 425,534 + -0.3 425,542 - -0.7 425,608 + +1.5 425,698 + -0.5 425,698 + -1.4 425,699 - +1.9 425,706 - +0.6 425,706 - -1.2 425,716 - -0.2 425,765 + -0.2 425,797 + +0.1 425,829 - +1.3 425,840 + +0.9 425,853 - -0.2 425,891 - PGA1_c04400 0.11 +0.8 425,899 + PGA1_c04400 0.12 -0.6 425,904 + PGA1_c04400 0.12 -0.9 425,904 + PGA1_c04400 0.12 +0.4 425,904 + PGA1_c04400 0.12 -2.1 425,907 - PGA1_c04400 0.12 -1.2 425,912 - PGA1_c04400 0.12 +0.6 425,917 - PGA1_c04400 0.12 +1.2 425,936 + PGA1_c04400 0.13 -0.7 425,936 + PGA1_c04400 0.13 -0.8 425,946 + PGA1_c04400 0.14 +0.7 425,946 + PGA1_c04400 0.14 -0.1 425,946 + PGA1_c04400 0.14 -0.9 425,954 - PGA1_c04400 0.14 -1.5 425,954 - PGA1_c04400 0.14 +0.2 425,954 - PGA1_c04400 0.14 -0.4 425,967 - PGA1_c04400 0.15 +0.7 425,999 - PGA1_c04400 0.16 -1.6 425,999 - PGA1_c04400 0.16 -0.5 426,019 - PGA1_c04400 0.17 -0.3 426,019 - PGA1_c04400 0.17 -0.0 426,024 - PGA1_c04400 0.17 +0.2 426,024 - PGA1_c04400 0.17 -2.7 426,029 + PGA1_c04400 0.17 +0.0 426,040 + PGA1_c04400 0.18 -1.1 426,040 + PGA1_c04400 0.18 -0.3 426,040 + PGA1_c04400 0.18 -0.2 426,040 + PGA1_c04400 0.18 -2.8 426,040 + PGA1_c04400 0.18 +0.3 426,040 + PGA1_c04400 0.18 -2.1 426,048 - PGA1_c04400 0.18 -0.7 426,048 - PGA1_c04400 0.18 -2.7 426,082 + PGA1_c04400 0.19 +1.8 426,096 + PGA1_c04400 0.20 -0.1 426,096 + PGA1_c04400 0.20 +1.8 426,096 + PGA1_c04400 0.20 +0.5 426,104 - PGA1_c04400 0.20 +0.8 426,120 + PGA1_c04400 0.21 -1.8 426,127 + PGA1_c04400 0.21 +0.1 426,128 + PGA1_c04400 0.21 -1.7 426,128 - PGA1_c04400 0.21 -1.4 426,162 + PGA1_c04400 0.23 -1.7 426,201 + PGA1_c04400 0.24 +0.4
Or see this region's nucleotide sequence