Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04160 and PGA1_c04170 are separated by 65 nucleotides PGA1_c04170 and PGA1_c04180 are separated by 176 nucleotides
PGA1_c04160: PGA1_c04160 - putative crotonobetaine/carnitine-CoA ligase, at 403,269 to 404,774
_c04160
PGA1_c04170: PGA1_c04170 - ribulose-phosphate 3-epimerase Rpe, at 404,840 to 405,529
_c04170
PGA1_c04180: PGA1_c04180 - phosphonates import ATP-binding protein PhnC, at 405,706 to 406,524
_c04180
Position (kb) 404
405
406 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 403.842 kb on + strand, within PGA1_c04160 at 403.847 kb on + strand, within PGA1_c04160 at 403.847 kb on + strand, within PGA1_c04160 at 403.855 kb on - strand, within PGA1_c04160 at 403.855 kb on - strand, within PGA1_c04160 at 403.855 kb on - strand, within PGA1_c04160 at 403.857 kb on + strand, within PGA1_c04160 at 403.865 kb on - strand, within PGA1_c04160 at 403.875 kb on + strand, within PGA1_c04160 at 403.883 kb on - strand, within PGA1_c04160 at 403.892 kb on + strand, within PGA1_c04160 at 403.926 kb on - strand, within PGA1_c04160 at 403.943 kb on + strand, within PGA1_c04160 at 403.943 kb on + strand, within PGA1_c04160 at 403.951 kb on - strand, within PGA1_c04160 at 403.976 kb on + strand, within PGA1_c04160 at 403.989 kb on - strand, within PGA1_c04160 at 403.991 kb on + strand, within PGA1_c04160 at 404.047 kb on + strand, within PGA1_c04160 at 404.054 kb on - strand, within PGA1_c04160 at 404.055 kb on + strand, within PGA1_c04160 at 404.087 kb on + strand, within PGA1_c04160 at 404.100 kb on - strand, within PGA1_c04160 at 404.129 kb on - strand, within PGA1_c04160 at 404.189 kb on + strand, within PGA1_c04160 at 404.194 kb on + strand, within PGA1_c04160 at 404.209 kb on + strand, within PGA1_c04160 at 404.244 kb on - strand, within PGA1_c04160 at 404.251 kb on + strand, within PGA1_c04160 at 404.251 kb on + strand, within PGA1_c04160 at 404.251 kb on + strand, within PGA1_c04160 at 404.251 kb on + strand, within PGA1_c04160 at 404.253 kb on + strand, within PGA1_c04160 at 404.254 kb on - strand, within PGA1_c04160 at 404.259 kb on - strand, within PGA1_c04160 at 404.259 kb on - strand, within PGA1_c04160 at 404.276 kb on - strand, within PGA1_c04160 at 404.301 kb on + strand, within PGA1_c04160 at 404.301 kb on + strand, within PGA1_c04160 at 404.370 kb on + strand, within PGA1_c04160 at 404.372 kb on + strand, within PGA1_c04160 at 404.589 kb on + strand, within PGA1_c04160 at 404.611 kb on + strand, within PGA1_c04160 at 404.659 kb on - strand at 404.664 kb on + strand at 404.696 kb on + strand at 404.754 kb on + strand at 404.822 kb on - strand at 405.587 kb on - strand at 405.619 kb on + strand at 405.670 kb on + strand at 405.670 kb on + strand at 405.678 kb on - strand at 405.678 kb on - strand at 405.678 kb on - strand at 405.680 kb on + strand at 405.680 kb on + strand at 405.688 kb on - strand at 405.688 kb on - strand at 405.701 kb on + strand at 405.701 kb on + strand at 405.708 kb on - strand at 405.756 kb on + strand at 405.756 kb on + strand at 405.799 kb on + strand, within PGA1_c04180 at 405.861 kb on + strand, within PGA1_c04180 at 405.890 kb on + strand, within PGA1_c04180 at 405.898 kb on - strand, within PGA1_c04180 at 405.898 kb on - strand, within PGA1_c04180 at 405.899 kb on + strand, within PGA1_c04180 at 405.899 kb on + strand, within PGA1_c04180 at 405.914 kb on + strand, within PGA1_c04180 at 405.914 kb on + strand, within PGA1_c04180 at 405.961 kb on - strand, within PGA1_c04180 at 405.961 kb on - strand, within PGA1_c04180 at 405.963 kb on + strand, within PGA1_c04180 at 405.971 kb on - strand, within PGA1_c04180 at 406.003 kb on - strand, within PGA1_c04180 at 406.012 kb on + strand, within PGA1_c04180 at 406.044 kb on + strand, within PGA1_c04180 at 406.044 kb on + strand, within PGA1_c04180 at 406.044 kb on + strand, within PGA1_c04180 at 406.106 kb on - strand, within PGA1_c04180 at 406.140 kb on + strand, within PGA1_c04180 at 406.148 kb on - strand, within PGA1_c04180 at 406.150 kb on - strand, within PGA1_c04180 at 406.155 kb on - strand, within PGA1_c04180 at 406.340 kb on - strand, within PGA1_c04180 at 406.398 kb on + strand, within PGA1_c04180 at 406.453 kb on + strand at 406.468 kb on - strand at 406.485 kb on - strand at 406.485 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 403,842 + PGA1_c04160 0.38 -1.1 403,847 + PGA1_c04160 0.38 +0.5 403,847 + PGA1_c04160 0.38 -0.6 403,855 - PGA1_c04160 0.39 +0.2 403,855 - PGA1_c04160 0.39 -0.2 403,855 - PGA1_c04160 0.39 -0.2 403,857 + PGA1_c04160 0.39 +0.6 403,865 - PGA1_c04160 0.40 +0.9 403,875 + PGA1_c04160 0.40 -1.6 403,883 - PGA1_c04160 0.41 -0.4 403,892 + PGA1_c04160 0.41 -1.2 403,926 - PGA1_c04160 0.44 +0.3 403,943 + PGA1_c04160 0.45 +0.0 403,943 + PGA1_c04160 0.45 +0.7 403,951 - PGA1_c04160 0.45 +1.2 403,976 + PGA1_c04160 0.47 -0.2 403,989 - PGA1_c04160 0.48 -0.5 403,991 + PGA1_c04160 0.48 -1.0 404,047 + PGA1_c04160 0.52 -0.4 404,054 - PGA1_c04160 0.52 -1.4 404,055 + PGA1_c04160 0.52 -0.6 404,087 + PGA1_c04160 0.54 -0.3 404,100 - PGA1_c04160 0.55 +0.4 404,129 - PGA1_c04160 0.57 +0.5 404,189 + PGA1_c04160 0.61 +0.2 404,194 + PGA1_c04160 0.61 -0.7 404,209 + PGA1_c04160 0.62 +0.2 404,244 - PGA1_c04160 0.65 +0.4 404,251 + PGA1_c04160 0.65 -0.3 404,251 + PGA1_c04160 0.65 -1.0 404,251 + PGA1_c04160 0.65 +1.5 404,251 + PGA1_c04160 0.65 -2.6 404,253 + PGA1_c04160 0.65 -1.5 404,254 - PGA1_c04160 0.65 +0.8 404,259 - PGA1_c04160 0.66 +0.8 404,259 - PGA1_c04160 0.66 +1.0 404,276 - PGA1_c04160 0.67 +0.6 404,301 + PGA1_c04160 0.69 -1.2 404,301 + PGA1_c04160 0.69 +1.0 404,370 + PGA1_c04160 0.73 -0.3 404,372 + PGA1_c04160 0.73 -3.1 404,589 + PGA1_c04160 0.88 -0.9 404,611 + PGA1_c04160 0.89 +1.0 404,659 - +0.7 404,664 + -0.7 404,696 + -2.2 404,754 + +1.5 404,822 - -2.1 405,587 - -0.2 405,619 + +0.7 405,670 + -0.5 405,670 + -0.7 405,678 - -0.7 405,678 - +1.4 405,678 - +0.3 405,680 + +0.5 405,680 + -0.2 405,688 - -3.2 405,688 - +0.2 405,701 + -0.1 405,701 + +0.4 405,708 - -0.2 405,756 + -1.2 405,756 + +0.3 405,799 + PGA1_c04180 0.11 +1.3 405,861 + PGA1_c04180 0.19 +0.9 405,890 + PGA1_c04180 0.22 -1.2 405,898 - PGA1_c04180 0.23 -1.2 405,898 - PGA1_c04180 0.23 +0.9 405,899 + PGA1_c04180 0.24 -0.1 405,899 + PGA1_c04180 0.24 +0.4 405,914 + PGA1_c04180 0.25 -0.5 405,914 + PGA1_c04180 0.25 +0.2 405,961 - PGA1_c04180 0.31 +0.4 405,961 - PGA1_c04180 0.31 +0.3 405,963 + PGA1_c04180 0.31 -0.6 405,971 - PGA1_c04180 0.32 -0.9 406,003 - PGA1_c04180 0.36 +0.8 406,012 + PGA1_c04180 0.37 -0.8 406,044 + PGA1_c04180 0.41 +0.2 406,044 + PGA1_c04180 0.41 -0.1 406,044 + PGA1_c04180 0.41 -0.5 406,106 - PGA1_c04180 0.49 +0.9 406,140 + PGA1_c04180 0.53 +2.1 406,148 - PGA1_c04180 0.54 -1.7 406,150 - PGA1_c04180 0.54 -0.6 406,155 - PGA1_c04180 0.55 -0.2 406,340 - PGA1_c04180 0.77 +0.1 406,398 + PGA1_c04180 0.84 +1.0 406,453 + +0.5 406,468 - -0.6 406,485 - -3.3 406,485 - +0.8
Or see this region's nucleotide sequence