Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01460 and PGA1_262p01470 are separated by 65 nucleotides PGA1_262p01470 and PGA1_262p01480 overlap by 4 nucleotides
PGA1_262p01460: PGA1_262p01460 - aldehyde dehydrogenase, at 159,077 to 160,570
_262p01460
PGA1_262p01470: PGA1_262p01470 - transcriptional regulator, LysR family, at 160,636 to 161,532
_262p01470
PGA1_262p01480: PGA1_262p01480 - transcriptional regulator, AraC family, at 161,529 to 162,536
_262p01480
Position (kb) 160
161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 159.871 kb on + strand, within PGA1_262p01460 at 159.871 kb on + strand, within PGA1_262p01460 at 159.871 kb on + strand, within PGA1_262p01460 at 159.927 kb on - strand, within PGA1_262p01460 at 159.936 kb on + strand, within PGA1_262p01460 at 159.989 kb on - strand, within PGA1_262p01460 at 160.235 kb on - strand, within PGA1_262p01460 at 160.241 kb on - strand, within PGA1_262p01460 at 160.269 kb on + strand, within PGA1_262p01460 at 160.277 kb on + strand, within PGA1_262p01460 at 160.277 kb on - strand, within PGA1_262p01460 at 160.407 kb on + strand, within PGA1_262p01460 at 160.415 kb on - strand, within PGA1_262p01460 at 160.521 kb on + strand at 160.534 kb on - strand at 160.569 kb on - strand at 160.929 kb on + strand, within PGA1_262p01470 at 160.949 kb on + strand, within PGA1_262p01470 at 161.027 kb on + strand, within PGA1_262p01470 at 161.091 kb on - strand, within PGA1_262p01470 at 161.129 kb on + strand, within PGA1_262p01470 at 161.129 kb on + strand, within PGA1_262p01470 at 161.251 kb on - strand, within PGA1_262p01470 at 161.268 kb on + strand, within PGA1_262p01470 at 161.276 kb on - strand, within PGA1_262p01470 at 161.276 kb on - strand, within PGA1_262p01470 at 161.300 kb on + strand, within PGA1_262p01470 at 161.457 kb on + strand at 161.457 kb on + strand at 161.457 kb on + strand at 161.457 kb on + strand at 161.457 kb on + strand at 161.534 kb on - strand at 161.591 kb on - strand at 161.613 kb on - strand at 162.040 kb on + strand, within PGA1_262p01480 at 162.267 kb on - strand, within PGA1_262p01480 at 162.312 kb on - strand, within PGA1_262p01480 at 162.317 kb on - strand, within PGA1_262p01480
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 159,871 + PGA1_262p01460 0.53 +0.8 159,871 + PGA1_262p01460 0.53 -2.8 159,871 + PGA1_262p01460 0.53 -0.6 159,927 - PGA1_262p01460 0.57 +1.1 159,936 + PGA1_262p01460 0.57 +0.4 159,989 - PGA1_262p01460 0.61 +0.2 160,235 - PGA1_262p01460 0.78 +0.7 160,241 - PGA1_262p01460 0.78 -1.4 160,269 + PGA1_262p01460 0.80 -0.5 160,277 + PGA1_262p01460 0.80 -1.2 160,277 - PGA1_262p01460 0.80 -1.1 160,407 + PGA1_262p01460 0.89 +1.9 160,415 - PGA1_262p01460 0.90 +0.4 160,521 + -0.9 160,534 - +1.2 160,569 - -2.2 160,929 + PGA1_262p01470 0.33 -1.5 160,949 + PGA1_262p01470 0.35 -1.6 161,027 + PGA1_262p01470 0.44 -0.9 161,091 - PGA1_262p01470 0.51 -1.2 161,129 + PGA1_262p01470 0.55 +0.6 161,129 + PGA1_262p01470 0.55 +0.2 161,251 - PGA1_262p01470 0.69 -0.2 161,268 + PGA1_262p01470 0.70 +1.4 161,276 - PGA1_262p01470 0.71 +0.3 161,276 - PGA1_262p01470 0.71 +0.2 161,300 + PGA1_262p01470 0.74 -0.7 161,457 + +1.2 161,457 + -0.3 161,457 + -0.4 161,457 + +1.7 161,457 + -0.0 161,534 - -0.2 161,591 - -0.1 161,613 - +2.0 162,040 + PGA1_262p01480 0.51 +0.5 162,267 - PGA1_262p01480 0.73 +0.1 162,312 - PGA1_262p01480 0.78 +1.6 162,317 - PGA1_262p01480 0.78 +2.4
Or see this region's nucleotide sequence