Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c22760

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
2,358,539	-		PGA1_c22740	0.89	+0.7
2,358,546	-		PGA1_c22740	0.89	-0.4
2,358,546	-		PGA1_c22740	0.89	-0.9
2,358,546	-		PGA1_c22740	0.89	+1.0
2,358,546	-		PGA1_c22740	0.89	-0.1
2,358,546	-		PGA1_c22740	0.89	+0.3
2,358,546	-		PGA1_c22740	0.89	-0.8
2,358,546	-		PGA1_c22740	0.89	+0.1
2,358,546	-		PGA1_c22740	0.89	-2.3
2,358,547	+		PGA1_c22740	0.89	+0.4
2,358,547	+		PGA1_c22740	0.89	-1.8
2,358,555	-		PGA1_c22740	0.90	+1.0
2,358,555	-		PGA1_c22740	0.90	+1.0
2,358,555	-		PGA1_c22740	0.90	+0.1
2,358,555	-		PGA1_c22740	0.90	+0.3
2,358,557	+		PGA1_c22740	0.90	+1.3
2,358,565	-				+1.0
2,358,636	+				+0.8
2,358,636	+				-2.9
2,358,636	+				-0.7
2,358,636	+				-0.4
2,358,636	+				-1.2
2,358,644	-				-1.0
2,358,644	-				-0.2
2,358,644	-				-0.1
2,358,646	+				-0.4
2,358,700	+				-0.2
2,358,700	+				+1.0
2,358,739	+				+0.3
2,358,747	+				-0.0
2,358,747	+				+0.9
2,358,747	+				+1.2
2,358,747	+				+0.0
2,358,747	+				+0.7
2,358,747	+				-0.0
2,358,747	+				-0.1
2,358,747	+				+0.8
2,358,747	+				+0.2
2,358,755	-				+1.3
2,358,755	-				-1.0
2,358,829	-				-0.2
2,358,837	+				-0.1
2,358,845	-				+0.9
2,358,858	-		PGA1_c22750	0.11	+1.4
2,358,964	-		PGA1_c22750	0.26	+0.0
2,359,008	+		PGA1_c22750	0.33	-0.3
2,359,008	+		PGA1_c22750	0.33	+0.5
2,359,015	+		PGA1_c22750	0.34	-1.1
2,359,016	-		PGA1_c22750	0.34	-1.5
2,359,016	-		PGA1_c22750	0.34	+0.3
2,359,020	+		PGA1_c22750	0.34	-3.1
2,359,028	-		PGA1_c22750	0.36	+0.3
2,359,028	-		PGA1_c22750	0.36	-0.4
2,359,083	+		PGA1_c22750	0.44	-0.5
2,359,098	+		PGA1_c22750	0.46	+0.3
2,359,104	+		PGA1_c22750	0.47	-1.4
2,359,104	+		PGA1_c22750	0.47	+0.8
2,359,104	+		PGA1_c22750	0.47	+0.9
2,359,104	+		PGA1_c22750	0.47	-3.6
2,359,107	-		PGA1_c22750	0.47	+0.4
2,359,112	-		PGA1_c22750	0.48	-1.0
2,359,118	+		PGA1_c22750	0.49	+0.5
2,359,133	+		PGA1_c22750	0.51	-0.5
2,359,133	+		PGA1_c22750	0.51	+1.3
2,359,133	+		PGA1_c22750	0.51	+0.6
2,359,133	+		PGA1_c22750	0.51	+1.6
2,359,141	-		PGA1_c22750	0.52	+0.5
2,359,141	-		PGA1_c22750	0.52	+0.4
2,359,147	-		PGA1_c22750	0.53	-0.4
2,359,147	-		PGA1_c22750	0.53	-0.3
2,359,210	+		PGA1_c22750	0.62	+1.0
2,359,210	+		PGA1_c22750	0.62	+0.3
2,359,230	+		PGA1_c22750	0.65	+0.8
2,359,288	+		PGA1_c22750	0.73	-1.4
2,359,296	-		PGA1_c22750	0.75	-2.2
2,359,296	-		PGA1_c22750	0.75	-0.8
2,359,296	-		PGA1_c22750	0.75	-1.0
2,359,335	+		PGA1_c22750	0.80	-2.1
2,359,343	+		PGA1_c22750	0.81	-1.6
2,359,343	+		PGA1_c22750	0.81	+0.7
2,359,351	-		PGA1_c22750	0.83	-1.1
2,359,351	-		PGA1_c22750	0.83	-0.2
2,359,351	-		PGA1_c22750	0.83	+1.5
2,359,358	+		PGA1_c22750	0.84	-0.1
2,359,380	+		PGA1_c22750	0.87	+1.4
2,359,380	+		PGA1_c22750	0.87	+0.7
2,359,380	+		PGA1_c22750	0.87	+0.6
2,359,388	-		PGA1_c22750	0.88	-0.3
2,359,388	-		PGA1_c22750	0.88	+0.8
2,359,403	+				-1.5
2,359,411	-				+0.0
2,359,425	+				+0.7
2,359,428	-				-0.4
2,359,536	+				+0.8
2,359,569	+				-0.6
2,359,641	+		PGA1_c22760	0.11	-0.2
2,359,690	-		PGA1_c22760	0.14	-0.5
2,359,690	-		PGA1_c22760	0.14	-1.6
2,359,754	+		PGA1_c22760	0.18	-0.6
2,359,798	+		PGA1_c22760	0.21	-1.0
2,359,818	-		PGA1_c22760	0.22	-1.4
2,359,818	-		PGA1_c22760	0.22	-0.7
2,359,883	-		PGA1_c22760	0.26	+0.2
2,359,885	-		PGA1_c22760	0.26	-1.8
2,359,896	-		PGA1_c22760	0.27	-0.1
2,359,906	-		PGA1_c22760	0.27	+0.6
2,359,906	-		PGA1_c22760	0.27	-1.3
2,359,931	+		PGA1_c22760	0.29	-1.2
2,359,931	+		PGA1_c22760	0.29	+0.5
2,359,939	+		PGA1_c22760	0.29	+1.2
2,359,947	-		PGA1_c22760	0.30	-1.3
2,360,056	+		PGA1_c22760	0.37	-0.1
2,360,088	+		PGA1_c22760	0.39	-1.2
2,360,115	+		PGA1_c22760	0.40	-0.3
2,360,123	-		PGA1_c22760	0.41	+0.6
2,360,140	-		PGA1_c22760	0.42	+0.6
2,360,152	+		PGA1_c22760	0.43	-0.0
2,360,206	-		PGA1_c22760	0.46	-0.5
2,360,208	+		PGA1_c22760	0.46	-0.4
2,360,229	+		PGA1_c22760	0.47	+1.1
2,360,237	-		PGA1_c22760	0.48	+0.2
2,360,237	-		PGA1_c22760	0.48	+0.8
2,360,238	+		PGA1_c22760	0.48	+0.6
2,360,263	+		PGA1_c22760	0.50	-0.2
2,360,328	-		PGA1_c22760	0.54	+1.3
2,360,340	+		PGA1_c22760	0.54	-1.5
2,360,340	+		PGA1_c22760	0.54	-3.0
2,360,343	-		PGA1_c22760	0.55	+1.3
2,360,349	-		PGA1_c22760	0.55	+0.1
2,360,359	-		PGA1_c22760	0.56	+0.5
2,360,393	-		PGA1_c22760	0.58	+1.1
2,360,477	+		PGA1_c22760	0.63	+0.3
2,360,477	+		PGA1_c22760	0.63	+0.1
2,360,477	+		PGA1_c22760	0.63	-1.8
2,360,477	+		PGA1_c22760	0.63	-0.2
2,360,477	+		PGA1_c22760	0.63	+0.0
2,360,477	+		PGA1_c22760	0.63	+0.7
2,360,477	+		PGA1_c22760	0.63	-1.2
2,360,485	-		PGA1_c22760	0.63	+0.9
2,360,485	-		PGA1_c22760	0.63	-1.1
2,360,485	-		PGA1_c22760	0.63	+0.6
2,360,485	-		PGA1_c22760	0.63	-0.9
2,360,514	+		PGA1_c22760	0.65	-0.4
2,360,514	+		PGA1_c22760	0.65	-0.3
2,360,522	+		PGA1_c22760	0.66	+0.3
2,360,522	-		PGA1_c22760	0.66	-0.8
2,360,591	+		PGA1_c22760	0.70	+0.9
2,360,599	-		PGA1_c22760	0.71	-3.0
2,360,601	+		PGA1_c22760	0.71	-2.1
2,360,601	+		PGA1_c22760	0.71	-0.3
2,360,609	-		PGA1_c22760	0.71	-0.6
2,360,609	-		PGA1_c22760	0.71	+0.0
2,360,624	+		PGA1_c22760	0.72	-1.2
2,360,624	+		PGA1_c22760	0.72	+0.7
2,360,632	-		PGA1_c22760	0.73	+0.3
2,360,632	-		PGA1_c22760	0.73	-0.4
2,360,651	+		PGA1_c22760	0.74	-1.6
2,360,656	+		PGA1_c22760	0.74	+0.2
2,360,672	-		PGA1_c22760	0.75	+0.2
2,360,689	+		PGA1_c22760	0.76	-1.5
2,360,689	+		PGA1_c22760	0.76	-0.1
2,360,689	+		PGA1_c22760	0.76	+0.1
2,360,697	-		PGA1_c22760	0.77	-0.4
2,360,770	+		PGA1_c22760	0.81	-1.0
2,360,773	-		PGA1_c22760	0.81	+0.2
2,360,799	-		PGA1_c22760	0.83	-0.8
2,360,803	+		PGA1_c22760	0.83	-0.5
2,360,882	+		PGA1_c22760	0.88	-1.6
2,360,886	-		PGA1_c22760	0.88	-0.4
2,360,890	+		PGA1_c22760	0.89	+0.1
2,360,890	-		PGA1_c22760	0.89	+0.3
2,360,927	-				-1.3
2,360,931	+				+2.9
2,360,931	+				+1.0
2,360,934	-				-2.3
2,360,939	-				-0.5
2,360,939	-				+0.3
2,360,939	-				-0.3
2,361,036	+				+0.6
2,361,051	-				-1.7
2,361,063	-				+0.6
2,361,064	+				+1.3
2,361,068	-				+0.1
2,361,076	-				+0.1
2,361,082	+				-0.1
2,361,092	+				-0.0
2,361,092	+				-1.3
2,361,122	+				-0.0
2,361,201	+				-0.4
2,361,209	-				+0.0
2,361,209	-				+0.2
2,361,254	+				+0.9
2,361,264	+				-0.7
2,361,324	-				-0.9
2,361,324	-				+0.9
2,361,352	-				+0.5
2,361,361	+				-0.1
2,361,369	-				+0.2
2,361,371	-				+0.4
2,361,388	+				-0.7
2,361,426	+		PGA1_c22770	0.13	-1.7
2,361,426	+		PGA1_c22770	0.13	+1.3
2,361,434	-		PGA1_c22770	0.14	-0.4
2,361,448	-		PGA1_c22770	0.15	+0.5
2,361,460	-		PGA1_c22770	0.17	-0.6
2,361,460	-		PGA1_c22770	0.17	+0.2
2,361,488	+		PGA1_c22770	0.20	-0.3
2,361,496	-		PGA1_c22770	0.20	-0.4
2,361,559	-		PGA1_c22770	0.27	-0.9
2,361,580	-		PGA1_c22770	0.30	+1.0
2,361,603	+		PGA1_c22770	0.32	-2.1
2,361,660	+		PGA1_c22770	0.38	+0.6
2,361,688	+		PGA1_c22770	0.41	+0.0
2,361,695	+		PGA1_c22770	0.42	-1.8
2,361,696	-		PGA1_c22770	0.42	+0.9
2,361,703	-		PGA1_c22770	0.43	-0.3
2,361,731	+		PGA1_c22770	0.46	+0.6
2,361,739	-		PGA1_c22770	0.47	+0.5
2,361,822	+		PGA1_c22770	0.56	+1.4
2,361,830	-		PGA1_c22770	0.57	-2.0
2,361,842	+		PGA1_c22770	0.58	-0.5
2,361,934	-		PGA1_c22770	0.68	-0.7
2,361,996	+		PGA1_c22770	0.75	-0.8
2,361,996	+		PGA1_c22770	0.75	+1.3
2,362,006	+		PGA1_c22770	0.76	-0.2
2,362,009	-		PGA1_c22770	0.76	-0.5
2,362,014	-		PGA1_c22770	0.77	-1.4
2,362,037	+		PGA1_c22770	0.79	-0.1
2,362,046	-		PGA1_c22770	0.80	-0.5
2,362,071	-		PGA1_c22770	0.83	-0.3