Strain Fitness in Marinobacter adhaerens HP15 around HP15_200

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_198 and HP15_199 overlap by 11 nucleotidesHP15_199 and HP15_200 are separated by 123 nucleotidesHP15_200 and HP15_201 are separated by 89 nucleotides HP15_198: HP15_198 - LrgA protein, at 185,682 to 186,041 _198 HP15_199: HP15_199 - LrgB family protein, at 186,031 to 186,753 _199 HP15_200: HP15_200 - peptide ABC transporter, periplasmic peptide-binding protein, at 186,877 to 188,472 _200 HP15_201: HP15_201 - peptide transport system permease ABC transporter protein, at 188,562 to 189,599 _201 Position (kb) 186 187 188 189Strain fitness (log2 ratio) -2 -1 0 1at 185.979 kb on + strand, within HP15_198at 186.054 kb on + strandat 186.054 kb on + strandat 186.085 kb on + strandat 186.112 kb on - strand, within HP15_199at 186.157 kb on - strand, within HP15_199at 186.161 kb on + strand, within HP15_199at 186.420 kb on - strand, within HP15_199at 186.429 kb on + strand, within HP15_199at 186.430 kb on - strand, within HP15_199at 186.517 kb on - strand, within HP15_199at 186.565 kb on - strand, within HP15_199at 186.584 kb on - strand, within HP15_199at 186.627 kb on - strand, within HP15_199at 186.721 kb on + strandat 186.812 kb on + strandat 186.812 kb on + strandat 187.018 kb on - strandat 187.055 kb on - strand, within HP15_200at 187.079 kb on + strand, within HP15_200at 187.079 kb on + strand, within HP15_200at 187.185 kb on + strand, within HP15_200at 187.237 kb on + strand, within HP15_200at 187.247 kb on + strand, within HP15_200at 187.319 kb on + strand, within HP15_200at 187.532 kb on - strand, within HP15_200at 187.555 kb on + strand, within HP15_200at 187.756 kb on - strand, within HP15_200at 187.895 kb on + strand, within HP15_200at 187.902 kb on - strand, within HP15_200at 187.929 kb on + strand, within HP15_200at 187.937 kb on - strand, within HP15_200at 187.947 kb on + strand, within HP15_200at 188.072 kb on - strand, within HP15_200at 188.096 kb on - strand, within HP15_200at 188.100 kb on + strand, within HP15_200at 188.100 kb on + strand, within HP15_200at 188.103 kb on - strand, within HP15_200at 188.161 kb on + strand, within HP15_200at 188.219 kb on + strand, within HP15_200at 188.224 kb on + strand, within HP15_200at 188.232 kb on - strand, within HP15_200at 188.232 kb on - strand, within HP15_200at 188.232 kb on - strand, within HP15_200at 188.309 kb on - strand, within HP15_200at 188.309 kb on - strand, within HP15_200at 188.375 kb on + strandat 188.383 kb on - strandat 188.441 kb on + strandat 188.449 kb on - strandat 188.501 kb on - strandat 188.538 kb on - strandat 188.552 kb on - strandat 188.634 kb on + strandat 188.658 kb on + strandat 188.684 kb on + strand, within HP15_201at 188.956 kb on - strand, within HP15_201at 189.013 kb on + strand, within HP15_201at 189.013 kb on - strand, within HP15_201at 189.021 kb on - strand, within HP15_201at 189.166 kb on + strand, within HP15_201at 189.166 kb on + strand, within HP15_201at 189.174 kb on - strand, within HP15_201at 189.174 kb on - strand, within HP15_201at 189.221 kb on + strand, within HP15_201at 189.239 kb on + strand, within HP15_201at 189.293 kb on + strand, within HP15_201at 189.325 kb on - strand, within HP15_201at 189.338 kb on + strand, within HP15_201at 189.344 kb on - strand, within HP15_201at 189.393 kb on - strand, within HP15_201at 189.441 kb on + strand, within HP15_201

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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185,979 + HP15_198 0.82 -0.3
186,054 + -0.1
186,054 + -0.1
186,085 + +0.3
186,112 - HP15_199 0.11 -0.1
186,157 - HP15_199 0.17 -0.1
186,161 + HP15_199 0.18 +0.5
186,420 - HP15_199 0.54 -0.4
186,429 + HP15_199 0.55 -0.0
186,430 - HP15_199 0.55 -1.1
186,517 - HP15_199 0.67 -0.0
186,565 - HP15_199 0.74 +0.2
186,584 - HP15_199 0.76 +0.2
186,627 - HP15_199 0.82 -0.5
186,721 + -0.1
186,812 + -1.3
186,812 + +0.3
187,018 - -0.8
187,055 - HP15_200 0.11 -0.3
187,079 + HP15_200 0.13 -0.5
187,079 + HP15_200 0.13 -0.7
187,185 + HP15_200 0.19 -0.5
187,237 + HP15_200 0.23 +0.2
187,247 + HP15_200 0.23 -0.1
187,319 + HP15_200 0.28 -0.5
187,532 - HP15_200 0.41 -0.6
187,555 + HP15_200 0.42 +0.7
187,756 - HP15_200 0.55 -0.7
187,895 + HP15_200 0.64 -0.5
187,902 - HP15_200 0.64 -0.6
187,929 + HP15_200 0.66 -0.7
187,937 - HP15_200 0.66 +0.0
187,947 + HP15_200 0.67 -0.2
188,072 - HP15_200 0.75 -0.6
188,096 - HP15_200 0.76 -0.1
188,100 + HP15_200 0.77 -0.7
188,100 + HP15_200 0.77 -0.4
188,103 - HP15_200 0.77 -0.5
188,161 + HP15_200 0.80 -0.6
188,219 + HP15_200 0.84 -0.6
188,224 + HP15_200 0.84 -0.2
188,232 - HP15_200 0.85 +0.4
188,232 - HP15_200 0.85 -0.3
188,232 - HP15_200 0.85 -0.7
188,309 - HP15_200 0.90 +0.4
188,309 - HP15_200 0.90 -0.3
188,375 + +0.7
188,383 - +0.4
188,441 + -0.4
188,449 - -0.9
188,501 - +0.4
188,538 - -0.7
188,552 - -0.5
188,634 + -0.3
188,658 + -2.2
188,684 + HP15_201 0.12 -0.3
188,956 - HP15_201 0.38 -0.2
189,013 + HP15_201 0.43 -0.7
189,013 - HP15_201 0.43 -0.3
189,021 - HP15_201 0.44 -0.9
189,166 + HP15_201 0.58 -0.3
189,166 + HP15_201 0.58 -0.1
189,174 - HP15_201 0.59 -0.3
189,174 - HP15_201 0.59 -0.9
189,221 + HP15_201 0.63 +0.8
189,239 + HP15_201 0.65 -0.7
189,293 + HP15_201 0.70 -0.7
189,325 - HP15_201 0.74 +0.5
189,338 + HP15_201 0.75 -0.5
189,344 - HP15_201 0.75 -0.7
189,393 - HP15_201 0.80 -0.7
189,441 + HP15_201 0.85 -1.2

Or see this region's nucleotide sequence