Strain Fitness in Shewanella amazonensis SB2B around Sama_3223

Experiment: Benzalkonium Chloride 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Benzalkonium Chloride 0.004 mg/ml
3,815,141	+		Sama_3222	0.13	-1.2
3,815,148	+		Sama_3222	0.14	+0.5
3,815,148	+		Sama_3222	0.14	-0.8
3,815,148	+		Sama_3222	0.14	-0.0
3,815,149	-		Sama_3222	0.14	+2.2
3,815,216	+		Sama_3222	0.23	-1.0
3,815,217	-		Sama_3222	0.23	-2.2
3,815,264	+		Sama_3222	0.30	-0.2
3,815,265	-		Sama_3222	0.30	-1.2
3,815,265	-		Sama_3222	0.30	+0.0
3,815,265	-		Sama_3222	0.30	-0.1
3,815,265	-		Sama_3222	0.30	+0.3
3,815,283	+		Sama_3222	0.32	-0.1
3,815,283	+		Sama_3222	0.32	+1.1
3,815,284	-		Sama_3222	0.32	-2.9
3,815,329	-		Sama_3222	0.39	+0.5
3,815,329	-		Sama_3222	0.39	-0.1
3,815,329	-		Sama_3222	0.39	-0.8
3,815,340	+		Sama_3222	0.40	-0.5
3,815,340	+		Sama_3222	0.40	-0.3
3,815,341	-		Sama_3222	0.40	+0.5
3,815,341	-		Sama_3222	0.40	-1.2
3,815,341	-		Sama_3222	0.40	+0.6
3,815,341	-		Sama_3222	0.40	-1.3
3,815,344	+		Sama_3222	0.41	+1.3
3,815,344	+		Sama_3222	0.41	+0.2
3,815,344	+		Sama_3222	0.41	-0.5
3,815,344	+		Sama_3222	0.41	+0.5
3,815,345	-		Sama_3222	0.41	-0.8
3,815,345	-		Sama_3222	0.41	+0.5
3,815,345	-		Sama_3222	0.41	+1.7
3,815,518	+		Sama_3222	0.64	+0.7
3,815,519	-		Sama_3222	0.64	+0.1
3,815,606	+		Sama_3222	0.76	-0.6
3,815,607	-		Sama_3222	0.77	-0.7
3,815,607	-		Sama_3222	0.77	+0.6
3,815,607	-		Sama_3222	0.77	-1.5
3,815,607	-		Sama_3222	0.77	-0.9
3,815,607	-		Sama_3222	0.77	-1.2
3,815,607	-		Sama_3222	0.77	+0.8
3,815,649	+		Sama_3222	0.82	+0.6
3,815,650	-		Sama_3222	0.82	-1.5
3,815,650	-		Sama_3222	0.82	+0.5
3,815,650	-		Sama_3222	0.82	-0.4
3,815,650	-		Sama_3222	0.82	-1.0
3,815,650	-		Sama_3222	0.82	+0.9
3,815,650	-		Sama_3222	0.82	+2.2
3,815,743	+				+1.7
3,815,743	+				+1.0
3,815,744	-				-1.5
3,815,744	-				+0.3
3,815,744	-				-0.8
3,815,744	-				+0.3
3,815,744	-				-1.3
3,815,748	+				+1.1
3,815,748	+				+0.9
3,815,748	+				-0.0
3,815,748	+				+0.7
3,815,748	+				-0.4
3,815,748	+				+0.9
3,815,748	+				+0.4
3,815,748	+				-0.5
3,815,748	+				-1.0
3,815,748	+				-0.7
3,815,748	+				-0.5
3,815,748	+				+0.6
3,815,748	+				+0.3
3,815,748	+				+1.0
3,815,749	-				-2.7
3,815,749	-				+0.3
3,815,749	-				+1.0
3,815,749	-				+1.0
3,815,749	-				-0.1
3,815,749	-				+1.1
3,815,831	+				+0.4
3,815,832	-				-0.2
3,815,832	-				+1.5
3,815,841	-				+0.1
3,815,841	-				-2.0
3,815,902	+				+0.7
3,815,903	-				+0.9
3,815,933	-				-0.7
3,815,933	-				-0.9
3,815,979	-				-1.2
3,816,080	+				+1.0
3,816,080	+				+0.1
3,816,084	+				+0.2
3,816,084	+				-0.0
3,816,084	+				-1.7
3,816,084	+				+0.2
3,816,084	+				+0.5
3,816,084	+				+0.5
3,816,084	+				-0.4
3,816,085	-				+0.1
3,816,085	-				-0.4
3,816,085	-				-2.2
3,816,085	-				+0.1
3,816,085	-				-0.4
3,816,088	-				+1.4
3,816,104	+				+1.7
3,816,105	-				-0.3
3,816,105	-				-0.8
3,816,105	-				+0.6
3,816,105	-				-2.2
3,816,143	+				+0.1
3,816,143	+				+0.8
3,816,144	-				-0.8
3,816,267	+		Sama_3223	0.11	-0.9
3,816,268	-		Sama_3223	0.11	-0.4
3,816,268	-		Sama_3223	0.11	+1.7
3,816,276	+		Sama_3223	0.11	+0.1
3,816,276	+		Sama_3223	0.11	+0.8
3,816,277	-		Sama_3223	0.11	+0.6
3,816,277	-		Sama_3223	0.11	-1.8
3,816,322	+		Sama_3223	0.14	-0.2
3,816,322	+		Sama_3223	0.14	-0.3
3,816,323	-		Sama_3223	0.15	-1.5
3,816,323	-		Sama_3223	0.15	+0.9
3,816,323	-		Sama_3223	0.15	+0.9
3,816,323	-		Sama_3223	0.15	+1.6
3,816,342	+		Sama_3223	0.16	-0.2
3,816,364	+		Sama_3223	0.17	-0.2
3,816,365	-		Sama_3223	0.18	+0.1
3,816,365	-		Sama_3223	0.18	-0.6
3,816,608	+		Sama_3223	0.35	-0.4
3,816,608	+		Sama_3223	0.35	+0.4
3,816,608	+		Sama_3223	0.35	+0.3
3,816,608	+		Sama_3223	0.35	-0.2
3,816,608	+		Sama_3223	0.35	+2.1
3,816,608	+		Sama_3223	0.35	-0.3
3,816,608	+		Sama_3223	0.35	-0.2
3,816,608	+		Sama_3223	0.35	+0.8
3,816,608	+		Sama_3223	0.35	+0.8
3,816,609	-		Sama_3223	0.35	-1.8
3,816,609	-		Sama_3223	0.35	+0.2
3,816,609	-		Sama_3223	0.35	+0.4
3,816,609	-		Sama_3223	0.35	+0.1
3,816,609	-		Sama_3223	0.35	-1.7
3,816,609	-		Sama_3223	0.35	+0.1
3,816,609	-		Sama_3223	0.35	-1.9
3,816,609	-		Sama_3223	0.35	-2.0
3,816,662	-		Sama_3223	0.39	+0.9
3,816,670	+		Sama_3223	0.39	+1.8
3,816,670	+		Sama_3223	0.39	+0.6
3,816,671	-		Sama_3223	0.39	-0.2
3,816,703	+		Sama_3223	0.41	-0.0
3,816,704	-		Sama_3223	0.42	-1.0
3,816,704	-		Sama_3223	0.42	+0.1
3,816,704	-		Sama_3223	0.42	-0.5
3,816,704	-		Sama_3223	0.42	+0.9
3,816,752	+		Sama_3223	0.45	+0.2
3,816,752	+		Sama_3223	0.45	-0.7
3,816,753	-		Sama_3223	0.45	+0.7
3,816,753	-		Sama_3223	0.45	-1.5
3,816,753	-		Sama_3223	0.45	+0.8
3,816,753	-		Sama_3223	0.45	-1.8
3,816,757	+		Sama_3223	0.45	-0.8
3,816,757	+		Sama_3223	0.45	+2.7
3,816,757	+		Sama_3223	0.45	+0.8
3,816,757	+		Sama_3223	0.45	-2.4
3,816,758	-		Sama_3223	0.45	-0.2
3,816,758	-		Sama_3223	0.45	-0.2
3,816,758	-		Sama_3223	0.45	+0.8
3,816,820	-		Sama_3223	0.50	-1.9
3,816,864	+		Sama_3223	0.53	+2.0
3,816,864	+		Sama_3223	0.53	+0.2
3,816,864	+		Sama_3223	0.53	-1.4
3,816,865	-		Sama_3223	0.53	+0.3
3,816,865	-		Sama_3223	0.53	+1.3
3,816,870	+		Sama_3223	0.53	+0.3
3,816,870	+		Sama_3223	0.53	-0.2
3,816,871	-		Sama_3223	0.53	-1.1
3,816,871	-		Sama_3223	0.53	+1.1
3,816,871	-		Sama_3223	0.53	-1.4
3,816,871	-		Sama_3223	0.53	-0.2
3,816,871	-		Sama_3223	0.53	-0.8
3,816,936	-		Sama_3223	0.58	-0.0
3,816,945	-		Sama_3223	0.59	-0.5
3,816,945	-		Sama_3223	0.59	+0.3
3,816,967	-		Sama_3223	0.60	-2.0
3,817,012	+		Sama_3223	0.63	-0.8
3,817,012	+		Sama_3223	0.63	+1.3
3,817,013	-		Sama_3223	0.63	-0.2
3,817,036	+		Sama_3223	0.65	+0.0
3,817,036	+		Sama_3223	0.65	+1.8
3,817,052	+		Sama_3223	0.66	+0.2
3,817,052	+		Sama_3223	0.66	+0.0
3,817,053	-		Sama_3223	0.66	-2.3
3,817,094	+		Sama_3223	0.69	+0.6
3,817,094	+		Sama_3223	0.69	-1.3
3,817,174	+		Sama_3223	0.75	+1.1
3,817,175	-		Sama_3223	0.75	+0.0
3,817,175	-		Sama_3223	0.75	+2.4
3,817,175	-		Sama_3223	0.75	+1.2
3,817,175	-		Sama_3223	0.75	+0.2
3,817,263	+		Sama_3223	0.81	+0.8
3,817,263	+		Sama_3223	0.81	+0.7
3,817,264	-		Sama_3223	0.81	-0.1
3,817,267	+		Sama_3223	0.81	-0.7
3,817,267	+		Sama_3223	0.81	+0.2
3,817,267	+		Sama_3223	0.81	-0.2
3,817,267	+		Sama_3223	0.81	+1.0
3,817,267	+		Sama_3223	0.81	-0.3
3,817,267	+		Sama_3223	0.81	+0.5
3,817,267	+		Sama_3223	0.81	+0.3
3,817,267	+		Sama_3223	0.81	-1.2
3,817,267	+		Sama_3223	0.81	+2.1
3,817,267	+		Sama_3223	0.81	-1.0
3,817,268	-		Sama_3223	0.82	-0.6
3,817,268	-		Sama_3223	0.82	+0.5
3,817,268	-		Sama_3223	0.82	+0.8
3,817,268	-		Sama_3223	0.82	-0.4
3,817,268	-		Sama_3223	0.82	-2.2
3,817,268	-		Sama_3223	0.82	+0.0
3,817,268	-		Sama_3223	0.82	-0.1
3,817,268	-		Sama_3223	0.82	-0.7
3,817,268	-		Sama_3223	0.82	-0.3
3,817,268	-		Sama_3223	0.82	-3.1
3,817,289	+		Sama_3223	0.83	+0.9
3,817,324	+		Sama_3223	0.86	+2.2
3,817,324	+		Sama_3223	0.86	+0.2
3,817,324	+		Sama_3223	0.86	+0.5
3,817,325	-		Sama_3223	0.86	-2.0
3,817,325	-		Sama_3223	0.86	-0.0
3,817,336	-		Sama_3223	0.86	+0.5
3,817,366	+		Sama_3223	0.89	-0.5
3,817,366	+		Sama_3223	0.89	-0.7
3,817,366	+		Sama_3223	0.89	-0.2
3,817,366	+		Sama_3223	0.89	-1.9
3,817,366	+		Sama_3223	0.89	+0.8
3,817,366	+		Sama_3223	0.89	+0.8
3,817,366	+		Sama_3223	0.89	-1.4
3,817,366	+		Sama_3223	0.89	-1.1
3,817,367	-		Sama_3223	0.89	+0.7
3,817,367	-		Sama_3223	0.89	+0.5
3,817,367	-		Sama_3223	0.89	+0.7
3,817,367	-		Sama_3223	0.89	+0.5
3,817,367	-		Sama_3223	0.89	-2.0
3,817,367	-		Sama_3223	0.89	+0.1
3,817,367	-		Sama_3223	0.89	-0.4
3,817,367	-		Sama_3223	0.89	+0.8
3,817,447	+				-0.2
3,817,448	-				-2.7
3,817,448	-				-2.5
3,817,448	-				-2.2
3,817,544	+				+2.2
3,817,544	+				-1.0
3,817,544	+				+0.0
3,817,544	+				+1.1
3,817,545	-				+0.4
3,817,545	-				+1.1
3,817,545	-				+0.2
3,817,545	-				+0.4
3,817,545	-				-1.1
3,817,545	-				-0.5
3,817,555	+				+0.3
3,817,555	+				-1.0
3,817,556	-				-1.6
3,817,563	+				-0.1
3,817,563	+				+1.0
3,817,563	+				-0.8
3,817,563	+				-0.4
3,817,563	+				+2.4
3,817,563	+				+2.0
3,817,563	+				-0.5
3,817,563	+				+0.8
3,817,564	-				+0.2
3,817,564	-				+0.0
3,817,564	-				+0.1
3,817,564	-				-0.3
3,817,564	-				-0.9
3,817,564	-				+0.3
3,817,564	-				-1.4
3,817,564	-				-0.6
3,817,564	-				-1.1
3,817,564	-				-2.7
3,817,573	+				-0.1
3,817,610	+				-1.9
3,817,616	-				-0.2
3,817,627	+				+0.5
3,817,642	+				+0.4
3,817,643	-				+0.2
3,817,643	-				+1.0
3,817,752	+	prmA	Sama_3224	0.12	+0.3
3,817,752	+	prmA	Sama_3224	0.12	-0.6
3,817,752	+	prmA	Sama_3224	0.12	-0.5
3,817,752	+	prmA	Sama_3224	0.12	-1.2
3,817,753	-	prmA	Sama_3224	0.12	+0.6
3,817,856	+	prmA	Sama_3224	0.23	+1.0
3,817,900	+	prmA	Sama_3224	0.28	+0.7
3,817,900	+	prmA	Sama_3224	0.28	-2.2
3,817,901	-	prmA	Sama_3224	0.28	+1.0
3,817,901	-	prmA	Sama_3224	0.28	+0.8
3,817,901	-	prmA	Sama_3224	0.28	-0.4
3,817,954	+	prmA	Sama_3224	0.34	+0.3
3,817,954	+	prmA	Sama_3224	0.34	-0.4
3,817,954	+	prmA	Sama_3224	0.34	+0.6
3,817,954	+	prmA	Sama_3224	0.34	+1.3
3,817,954	+	prmA	Sama_3224	0.34	-0.2
3,817,954	+	prmA	Sama_3224	0.34	-0.6
3,817,954	+	prmA	Sama_3224	0.34	+1.0
3,817,954	+	prmA	Sama_3224	0.34	+0.8
3,817,954	+	prmA	Sama_3224	0.34	+0.3
3,817,955	-	prmA	Sama_3224	0.35	+0.0
3,817,955	-	prmA	Sama_3224	0.35	-1.5
3,817,955	-	prmA	Sama_3224	0.35	+0.5
3,817,955	-	prmA	Sama_3224	0.35	-0.1
3,817,955	-	prmA	Sama_3224	0.35	+0.5
3,817,955	-	prmA	Sama_3224	0.35	+0.6
3,817,955	-	prmA	Sama_3224	0.35	+0.4
3,817,955	-	prmA	Sama_3224	0.35	+0.0
3,818,067	+	prmA	Sama_3224	0.47	-1.2
3,818,134	-	prmA	Sama_3224	0.55	+0.5
3,818,178	+	prmA	Sama_3224	0.60	+0.8
3,818,178	+	prmA	Sama_3224	0.60	+0.3
3,818,219	-	prmA	Sama_3224	0.64	-2.0
3,818,256	+	prmA	Sama_3224	0.68	-1.5
3,818,256	+	prmA	Sama_3224	0.68	+0.0
3,818,264	+	prmA	Sama_3224	0.69	-2.2
3,818,264	+	prmA	Sama_3224	0.69	+0.9
3,818,264	+	prmA	Sama_3224	0.69	+2.0
3,818,265	-	prmA	Sama_3224	0.69	+0.7
3,818,284	+	prmA	Sama_3224	0.72	+0.4
3,818,284	+	prmA	Sama_3224	0.72	+0.5
3,818,284	+	prmA	Sama_3224	0.72	-0.6
3,818,285	-	prmA	Sama_3224	0.72	-2.1
3,818,285	-	prmA	Sama_3224	0.72	+0.5
3,818,285	-	prmA	Sama_3224	0.72	-1.8
3,818,285	-	prmA	Sama_3224	0.72	-0.6
3,818,285	-	prmA	Sama_3224	0.72	-3.6
3,818,337	+	prmA	Sama_3224	0.78	-0.2
3,818,373	+	prmA	Sama_3224	0.82	+0.3
3,818,374	-	prmA	Sama_3224	0.82	-0.9
3,818,405	+	prmA	Sama_3224	0.85	-0.3
3,818,456	-				+0.6
3,818,519	+				+1.0