Strain Fitness in Shewanella amazonensis SB2B around Sama_3022

Experiment: Benzalkonium Chloride 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Benzalkonium Chloride 0.004 mg/ml
3,595,264	-				-1.9
3,595,283	-				-0.3
3,595,284	+				-0.3
3,595,284	+				-1.0
3,595,284	+				-0.9
3,595,284	+				-1.9
3,595,284	+				+0.1
3,595,285	-				-2.5
3,595,285	-				+0.1
3,595,285	-				-2.9
3,595,285	-				-1.6
3,595,324	+				-0.3
3,595,333	+				-3.2
3,595,333	+				-0.7
3,595,334	-				-1.7
3,595,341	-				-1.4
3,595,341	-				-0.4
3,595,389	-				-1.4
3,595,438	+		Sama_3021	0.17	-2.5
3,595,438	+		Sama_3021	0.17	-0.9
3,595,495	+		Sama_3021	0.26	-0.9
3,595,495	+		Sama_3021	0.26	-1.6
3,595,495	+		Sama_3021	0.26	-1.0
3,595,495	+		Sama_3021	0.26	-0.9
3,595,495	+		Sama_3021	0.26	-2.1
3,595,496	-		Sama_3021	0.27	-0.6
3,595,496	-		Sama_3021	0.27	-0.1
3,595,496	-		Sama_3021	0.27	-2.3
3,595,496	-		Sama_3021	0.27	-1.3
3,595,532	+		Sama_3021	0.33	-0.5
3,595,532	+		Sama_3021	0.33	-1.1
3,595,533	-		Sama_3021	0.33	-1.9
3,595,533	-		Sama_3021	0.33	-0.9
3,595,536	+		Sama_3021	0.33	-0.9
3,595,537	-		Sama_3021	0.34	-2.8
3,595,558	-		Sama_3021	0.37	-0.0
3,595,563	+		Sama_3021	0.38	-0.9
3,595,563	+		Sama_3021	0.38	-1.3
3,595,564	-		Sama_3021	0.38	-2.1
3,595,580	+		Sama_3021	0.41	-0.9
3,595,581	-		Sama_3021	0.41	-3.6
3,595,594	-		Sama_3021	0.43	-2.1
3,595,594	-		Sama_3021	0.43	-1.6
3,595,600	+		Sama_3021	0.44	+0.1
3,595,600	+		Sama_3021	0.44	+0.1
3,595,600	+		Sama_3021	0.44	-1.0
3,595,616	+		Sama_3021	0.47	-1.9
3,595,617	-		Sama_3021	0.47	-0.0
3,595,630	+		Sama_3021	0.49	-0.5
3,595,630	+		Sama_3021	0.49	-2.1
3,595,630	+		Sama_3021	0.49	-3.2
3,595,630	+		Sama_3021	0.49	-1.3
3,595,631	-		Sama_3021	0.49	-2.7
3,595,631	-		Sama_3021	0.49	-2.0
3,595,631	-		Sama_3021	0.49	-0.7
3,595,631	-		Sama_3021	0.49	-0.9
3,595,683	+		Sama_3021	0.58	-0.3
3,595,684	-		Sama_3021	0.58	-1.3
3,595,705	+		Sama_3021	0.62	-1.9
3,595,705	+		Sama_3021	0.62	-3.1
3,595,705	+		Sama_3021	0.62	-0.9
3,595,705	+		Sama_3021	0.62	-2.0
3,595,723	-		Sama_3021	0.65	-2.5
3,595,735	+		Sama_3021	0.67	+0.7
3,595,735	+		Sama_3021	0.67	-1.5
3,595,735	+		Sama_3021	0.67	-1.9
3,595,736	-		Sama_3021	0.67	+0.1
3,595,770	+		Sama_3021	0.73	+0.4
3,595,770	+		Sama_3021	0.73	-0.3
3,595,771	-		Sama_3021	0.73	+0.3
3,595,771	-		Sama_3021	0.73	+0.3
3,595,771	-		Sama_3021	0.73	-1.5
3,595,771	-		Sama_3021	0.73	-0.3
3,595,771	-		Sama_3021	0.73	-2.7
3,595,773	+		Sama_3021	0.73	-0.6
3,595,774	-		Sama_3021	0.74	-0.5
3,595,774	-		Sama_3021	0.74	+0.1
3,595,774	-		Sama_3021	0.74	-2.9
3,595,774	-		Sama_3021	0.74	-0.5
3,595,830	+		Sama_3021	0.83	-0.2
3,595,843	+		Sama_3021	0.85	-0.0
3,595,871	-				+1.1
3,595,936	-				-0.8
3,596,030	+				-1.0
3,596,031	-				-0.3
3,596,031	-				+0.0
3,596,033	-				+0.9
3,596,073	+				+0.3
3,596,073	+				+1.3
3,596,073	+				-0.9
3,596,073	+				+0.5
3,596,073	+				+0.4
3,596,073	+				+0.4
3,596,073	+				+0.7
3,596,074	-				+0.9
3,596,074	-				+0.9
3,596,074	-				+0.3
3,596,074	-				+1.0
3,596,074	-				+0.1
3,596,074	-				+0.7
3,596,074	-				+0.1
3,596,086	+				+1.6
3,596,114	-				+0.1
3,596,123	+				-0.0
3,596,123	+				-3.5
3,596,124	-				-0.2
3,596,124	-				+0.8
3,596,148	-				-0.9
3,596,149	+				+1.0
3,596,149	+				+0.4
3,596,178	+				-0.9
3,596,178	+				-1.9
3,596,179	-				-2.1
3,596,222	+				+0.0
3,596,222	+				-0.5
3,596,242	-				-1.9
3,596,258	-				+0.1
3,596,279	+				-0.6
3,596,280	-				-0.3
3,596,280	-				+0.3
3,596,348	-				-1.5
3,596,348	-				-2.6
3,596,348	-				-1.9
3,596,348	-				-1.6
3,596,355	+		Sama_3022	0.11	-3.3
3,596,396	-		Sama_3022	0.15	-2.3
3,596,407	+		Sama_3022	0.16	-0.0
3,596,422	-		Sama_3022	0.18	-0.3
3,596,422	-		Sama_3022	0.18	-1.2
3,596,577	-		Sama_3022	0.35	-1.7
3,596,577	-		Sama_3022	0.35	-3.4
3,596,577	-		Sama_3022	0.35	+0.2
3,596,616	-		Sama_3022	0.39	-0.9
3,596,632	-		Sama_3022	0.41	-0.9
3,596,632	-		Sama_3022	0.41	-2.1
3,596,864	-		Sama_3022	0.66	-2.6
3,596,867	-		Sama_3022	0.66	-3.5
3,596,900	-		Sama_3022	0.69	-2.4
3,596,900	-		Sama_3022	0.69	-1.9
3,596,994	-		Sama_3022	0.80	-1.6
3,597,070	-		Sama_3022	0.88	-2.3
3,597,118	-				-1.6
3,597,169	-				-2.9
3,597,169	-				-1.3
3,597,172	-				-0.5
3,597,183	-				+0.7
3,597,183	-				-1.1
3,597,183	-				-2.5
3,597,188	-				-0.1
3,597,188	-				-0.3
3,597,294	-				-3.1
3,597,356	-		Sama_3023	0.15	-2.5
3,597,387	-		Sama_3023	0.18	-2.7
3,597,401	+		Sama_3023	0.19	-2.9
3,597,434	-		Sama_3023	0.22	-1.6
3,597,434	-		Sama_3023	0.22	-1.4
3,597,558	-		Sama_3023	0.33	-2.7
3,597,558	-		Sama_3023	0.33	-0.0
3,597,734	-		Sama_3023	0.48	-1.1
3,597,734	-		Sama_3023	0.48	-2.1
3,597,744	-		Sama_3023	0.49	-0.5
3,597,896	-		Sama_3023	0.63	-2.1
3,597,896	-		Sama_3023	0.63	-0.9
3,597,920	-		Sama_3023	0.65	-0.3
3,597,920	-		Sama_3023	0.65	-1.9
3,597,920	-		Sama_3023	0.65	-2.3
3,598,093	-		Sama_3023	0.80	-1.7
3,598,121	-		Sama_3023	0.82	-1.3
3,598,141	-		Sama_3023	0.84	-1.3
3,598,165	-		Sama_3023	0.86	-0.3