Strain Fitness in Shewanella amazonensis SB2B around Sama_2165

Experiment: Benzalkonium Chloride 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Benzalkonium Chloride 0.004 mg/ml
2,618,725	+		Sama_2164	0.79	+1.2
2,618,727	+		Sama_2164	0.79	-0.8
2,618,727	+		Sama_2164	0.79	-1.1
2,618,727	+		Sama_2164	0.79	-1.0
2,618,728	-		Sama_2164	0.80	-0.3
2,618,728	-		Sama_2164	0.80	+1.0
2,618,735	+		Sama_2164	0.80	-0.6
2,618,735	+		Sama_2164	0.80	+0.4
2,618,735	+		Sama_2164	0.80	-0.9
2,618,735	+		Sama_2164	0.80	+1.1
2,618,865	-		Sama_2164	0.83	+0.8
2,618,865	-		Sama_2164	0.83	-0.8
2,618,886	+		Sama_2164	0.83	+0.7
2,618,887	-		Sama_2164	0.83	-0.6
2,618,887	-		Sama_2164	0.83	+1.7
2,618,949	+		Sama_2164	0.85	-0.1
2,619,025	+		Sama_2164	0.86	-0.6
2,619,026	-		Sama_2164	0.86	-0.0
2,619,133	+		Sama_2164	0.89	+0.6
2,619,133	+		Sama_2164	0.89	-0.5
2,619,204	+				+1.4
2,619,208	+				-0.3
2,619,209	-				-0.3
2,619,263	-				-1.6
2,619,308	+				+0.8
2,619,308	+				-0.6
2,619,331	+				+0.4
2,619,332	-				+1.1
2,619,366	+				+1.0
2,619,366	+				-0.9
2,619,367	-				+0.4
2,619,367	-				-0.5
2,619,367	-				+1.6
2,619,367	-				+1.0
2,619,370	+				+0.9
2,619,370	+				+0.4
2,619,371	-				+3.2
2,619,388	+				+1.0
2,619,388	+				+0.4
2,619,389	-				-0.1
2,619,396	+				-1.4
2,619,396	+				+1.2
2,619,423	-				+0.2
2,619,441	+				-1.4
2,619,453	+				+0.0
2,619,454	-				+0.4
2,619,481	-				+0.1
2,619,481	-				+0.1
2,619,512	+				-1.1
2,619,513	-				+0.2
2,619,518	+				-1.1
2,619,523	+				-1.9
2,619,593	+				+0.2
2,619,649	+				+1.3
2,619,667	+				+0.1
2,619,667	+				+0.4
2,619,691	+				-1.1
2,619,691	+				-2.0
2,619,692	-				+0.7
2,619,692	-				-1.9
2,619,692	-				+1.0
2,619,710	-				+0.4
2,619,719	+				+0.9
2,619,720	-				-0.7
2,619,746	+		Sama_2165	0.11	-1.4
2,619,765	-		Sama_2165	0.15	+0.4
2,619,765	-		Sama_2165	0.15	+1.4
2,619,765	-		Sama_2165	0.15	-0.8
2,619,801	-		Sama_2165	0.24	+0.2
2,619,803	+		Sama_2165	0.24	-1.1
2,619,870	-		Sama_2165	0.40	+0.4
2,619,908	+		Sama_2165	0.48	+1.4
2,619,908	+		Sama_2165	0.48	+0.0
2,619,908	+		Sama_2165	0.48	-0.1
2,619,948	-		Sama_2165	0.58	+0.6
2,619,948	-		Sama_2165	0.58	+0.6
2,619,948	-		Sama_2165	0.58	-1.4
2,619,948	-		Sama_2165	0.58	+1.1
2,619,948	-		Sama_2165	0.58	+1.0
2,619,948	-		Sama_2165	0.58	+1.3
2,619,948	-		Sama_2165	0.58	-0.1
2,619,948	-		Sama_2165	0.58	+1.1
2,619,948	-		Sama_2165	0.58	-0.6
2,619,948	-		Sama_2165	0.58	+0.1
2,619,948	-		Sama_2165	0.58	-1.9
2,620,103	+				-0.5
2,620,103	+				-0.1
2,620,103	+				-0.0
2,620,103	+				+1.4
2,620,103	+				-0.1
2,620,103	+				+1.7
2,620,128	+				+1.9
2,620,129	-				+1.7
2,620,155	-				+0.0
2,620,155	-				+0.2
2,620,155	-				-1.1
2,620,159	+				-1.1
2,620,159	+				+0.7
2,620,159	+				+0.4
2,620,248	+				+0.3
2,620,248	+				-0.2
2,620,249	-				-0.0
2,620,251	+				-0.9
2,620,251	+				-1.3
2,620,251	+				-0.7
2,620,252	-				-0.8
2,620,252	-				+0.9
2,620,252	-				-0.6
2,620,252	-				-2.9
2,620,327	+				+0.9
2,620,328	-				-2.7
2,620,412	-		Sama_2166	0.27	+0.3
2,620,427	+		Sama_2166	0.33	+0.1
2,620,503	+		Sama_2166	0.64	+0.2
2,620,550	-		Sama_2166	0.83	-1.1
2,620,550	-		Sama_2166	0.83	+1.7
2,620,550	-		Sama_2166	0.83	+2.8
2,620,588	-				+0.2
2,620,724	-				+0.1
2,620,727	-				+0.1
2,620,757	+				+0.0
2,620,758	-				+0.0
2,620,789	+				+0.7
2,620,789	+				+0.6
2,620,790	-				-1.4
2,620,790	-				-0.5
2,620,819	-				-0.4
2,620,819	-				+0.4
2,620,827	-				+0.9
2,620,842	-				-0.6
2,620,847	+				+2.0
2,620,847	+				-0.2
2,620,848	-				-2.7
2,620,848	-				+0.9
2,620,904	+				-0.6
2,620,930	-				+0.9
2,620,930	-				-0.6
2,621,007	-	fadJ	Sama_2167	0.13	+2.6
2,621,022	+	fadJ	Sama_2167	0.14	-1.3
2,621,023	-	fadJ	Sama_2167	0.14	+1.4
2,621,039	-	fadJ	Sama_2167	0.15	-0.4
2,621,100	-	fadJ	Sama_2167	0.18	+1.2