Strain Fitness in Shewanella amazonensis SB2B around Sama_2011

Experiment: Benzalkonium Chloride 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Benzalkonium Chloride 0.004 mg/ml
2,442,474	+		Sama_2010	0.60	+0.9
2,442,474	+		Sama_2010	0.60	-0.2
2,442,475	-		Sama_2010	0.61	+0.8
2,442,475	-		Sama_2010	0.61	+0.5
2,442,489	+		Sama_2010	0.62	+2.1
2,442,606	+		Sama_2010	0.70	+0.4
2,442,610	+		Sama_2010	0.71	-1.1
2,442,610	+		Sama_2010	0.71	-2.5
2,442,610	+		Sama_2010	0.71	-0.8
2,442,610	+		Sama_2010	0.71	-0.9
2,442,611	-		Sama_2010	0.71	+0.3
2,442,611	-		Sama_2010	0.71	-0.9
2,442,611	-		Sama_2010	0.71	-1.4
2,442,611	-		Sama_2010	0.71	+0.7
2,442,611	-		Sama_2010	0.71	-0.5
2,442,611	-		Sama_2010	0.71	-0.2
2,442,611	-		Sama_2010	0.71	+1.5
2,442,611	-		Sama_2010	0.71	+0.9
2,442,711	-		Sama_2010	0.78	-0.3
2,442,760	+		Sama_2010	0.82	+0.5
2,442,890	+				-0.7
2,442,890	+				+1.6
2,442,891	-				+0.6
2,442,891	-				+0.3
2,442,891	-				+0.5
2,442,943	+				+0.5
2,442,944	-				+0.8
2,442,962	-				+0.1
2,442,990	-				+0.4
2,443,045	+				+0.6
2,443,085	-				+0.3
2,443,124	+				+1.0
2,443,160	+				+0.3
2,443,161	-				+0.5
2,443,209	+				+0.5
2,443,209	+				+0.3
2,443,209	+				-0.0
2,443,210	-				-0.9
2,443,320	+				-0.4
2,443,396	+				+0.7
2,443,525	+				-1.8
2,443,600	+		Sama_2011	0.11	-1.1
2,443,673	+		Sama_2011	0.15	+0.1
2,443,710	+		Sama_2011	0.16	-1.7
2,443,710	+		Sama_2011	0.16	+0.3
2,443,711	-		Sama_2011	0.16	-2.4
2,443,718	-		Sama_2011	0.17	-0.4
2,443,782	+		Sama_2011	0.20	-3.4
2,443,792	+		Sama_2011	0.20	-0.2
2,443,793	-		Sama_2011	0.20	-0.0
2,443,795	-		Sama_2011	0.20	-0.8
2,443,795	-		Sama_2011	0.20	+0.1
2,443,795	-		Sama_2011	0.20	-1.7
2,443,795	-		Sama_2011	0.20	-1.4
2,443,795	-		Sama_2011	0.20	+0.2
2,443,795	-		Sama_2011	0.20	-2.0
2,443,838	-		Sama_2011	0.22	-1.7
2,443,838	-		Sama_2011	0.22	-3.8
2,443,856	+		Sama_2011	0.23	-1.3
2,443,856	+		Sama_2011	0.23	-2.0
2,443,857	-		Sama_2011	0.23	+0.0
2,443,857	-		Sama_2011	0.23	-0.0
2,443,857	-		Sama_2011	0.23	+0.3
2,443,857	-		Sama_2011	0.23	-0.5
2,443,895	+		Sama_2011	0.25	-0.7
2,443,895	+		Sama_2011	0.25	-2.0
2,443,896	-		Sama_2011	0.25	-0.7
2,443,896	-		Sama_2011	0.25	-1.1
2,443,896	-		Sama_2011	0.25	-2.8
2,443,991	-		Sama_2011	0.29	-0.7
2,443,991	-		Sama_2011	0.29	-3.3
2,443,991	-		Sama_2011	0.29	+0.3
2,444,049	+		Sama_2011	0.32	-0.9
2,444,049	+		Sama_2011	0.32	-1.1
2,444,049	+		Sama_2011	0.32	-0.7
2,444,049	+		Sama_2011	0.32	+0.3
2,444,049	+		Sama_2011	0.32	+0.1
2,444,049	+		Sama_2011	0.32	-0.4
2,444,049	+		Sama_2011	0.32	-0.3
2,444,049	+		Sama_2011	0.32	-0.1
2,444,049	+		Sama_2011	0.32	-0.7
2,444,050	-		Sama_2011	0.32	-0.7
2,444,050	-		Sama_2011	0.32	-0.5
2,444,057	+		Sama_2011	0.32	+0.3
2,444,058	-		Sama_2011	0.32	-2.2
2,444,178	+		Sama_2011	0.38	-0.4
2,444,178	+		Sama_2011	0.38	-1.4
2,444,178	+		Sama_2011	0.38	-1.1
2,444,179	-		Sama_2011	0.38	+0.7
2,444,180	+		Sama_2011	0.38	-1.3
2,444,181	-		Sama_2011	0.38	-0.3
2,444,270	+		Sama_2011	0.42	-1.8
2,444,282	-		Sama_2011	0.42	-0.8
2,444,318	+		Sama_2011	0.44	+1.2
2,444,319	-		Sama_2011	0.44	-0.9
2,444,319	-		Sama_2011	0.44	+0.8
2,444,408	-		Sama_2011	0.48	-1.3
2,444,408	-		Sama_2011	0.48	-1.3
2,444,418	-		Sama_2011	0.49	-1.0
2,444,590	-		Sama_2011	0.56	-0.0
2,444,634	+		Sama_2011	0.58	-1.1
2,444,659	-		Sama_2011	0.60	-1.1
2,444,686	-		Sama_2011	0.61	-0.0
2,444,686	-		Sama_2011	0.61	-1.7
2,444,686	-		Sama_2011	0.61	-0.9
2,444,686	-		Sama_2011	0.61	+0.5
2,444,784	+		Sama_2011	0.65	+0.6
2,444,784	+		Sama_2011	0.65	-3.5
2,444,784	+		Sama_2011	0.65	-0.7
2,444,784	+		Sama_2011	0.65	-1.3
2,444,784	+		Sama_2011	0.65	+0.6
2,444,785	-		Sama_2011	0.65	-2.0
2,444,785	-		Sama_2011	0.65	-0.4
2,444,785	-		Sama_2011	0.65	-1.0
2,444,785	-		Sama_2011	0.65	+0.5
2,444,785	-		Sama_2011	0.65	+0.3
2,444,785	-		Sama_2011	0.65	-2.3
2,444,785	-		Sama_2011	0.65	-0.9
2,444,785	-		Sama_2011	0.65	-1.5
2,444,786	+		Sama_2011	0.65	-1.7
2,444,786	+		Sama_2011	0.65	-0.7
2,444,787	-		Sama_2011	0.65	-1.7
2,444,787	-		Sama_2011	0.65	-0.4
2,444,787	-		Sama_2011	0.65	-1.1
2,444,787	-		Sama_2011	0.65	-1.6
2,444,788	+		Sama_2011	0.65	-2.3
2,444,788	+		Sama_2011	0.65	+0.3
2,444,789	-		Sama_2011	0.66	-3.3
2,444,797	-		Sama_2011	0.66	-0.5
2,444,845	-		Sama_2011	0.68	+0.3
2,445,032	+		Sama_2011	0.77	+0.4
2,445,032	+		Sama_2011	0.77	-0.5
2,445,080	-		Sama_2011	0.79	-1.3
2,445,136	+		Sama_2011	0.81	-1.3
2,445,235	+		Sama_2011	0.86	-0.7
2,445,236	-		Sama_2011	0.86	+0.2
2,445,236	-		Sama_2011	0.86	-2.0
2,445,236	-		Sama_2011	0.86	+0.1
2,445,303	+		Sama_2011	0.89	-1.5
2,445,303	+		Sama_2011	0.89	-0.3
2,445,303	+		Sama_2011	0.89	-1.7
2,445,303	+		Sama_2011	0.89	+0.3
2,445,304	-		Sama_2011	0.89	+0.6
2,445,304	-		Sama_2011	0.89	-2.0
2,445,304	-		Sama_2011	0.89	-0.5
2,445,304	-		Sama_2011	0.89	-1.0
2,445,328	+				-1.8
2,445,328	+				-3.4
2,445,328	+				-0.8
2,445,385	+				-1.1
2,445,392	-				-0.3
2,445,396	+				+0.5
2,445,397	-				-1.6
2,445,397	-				-2.1
2,445,415	-				+0.9
2,445,416	+				-1.3
2,445,416	+				-0.9
2,445,416	+				+0.1
2,445,416	+				+0.1
2,445,416	+				-2.3
2,445,417	-				-0.7
2,445,417	-				-0.8
2,445,422	+				-1.1
2,445,481	-				-1.5
2,445,518	-				-0.1
2,445,518	-				-0.3
2,445,685	+				-0.7
2,445,717	+		Sama_2012	0.10	+1.1
2,445,717	+		Sama_2012	0.10	+0.3
2,445,811	+		Sama_2012	0.16	+0.3
2,445,811	+		Sama_2012	0.16	+1.4
2,445,812	-		Sama_2012	0.16	+1.9
2,445,923	+		Sama_2012	0.24	+0.6
2,445,924	-		Sama_2012	0.24	+2.3
2,445,924	-		Sama_2012	0.24	+1.5
2,445,927	+		Sama_2012	0.24	+1.7
2,445,928	-		Sama_2012	0.24	+2.1
2,445,965	+		Sama_2012	0.27	-0.1
2,445,966	-		Sama_2012	0.27	+1.2
2,445,974	+		Sama_2012	0.27	+1.1
2,445,975	-		Sama_2012	0.27	-0.7
2,446,030	+		Sama_2012	0.31	-1.3
2,446,030	+		Sama_2012	0.31	+0.2
2,446,031	-		Sama_2012	0.31	+1.0
2,446,065	+		Sama_2012	0.33	+1.9
2,446,065	+		Sama_2012	0.33	+1.4
2,446,102	+		Sama_2012	0.36	-0.3
2,446,102	+		Sama_2012	0.36	+0.6
2,446,102	+		Sama_2012	0.36	+1.5
2,446,102	+		Sama_2012	0.36	+0.9
2,446,102	+		Sama_2012	0.36	-0.3
2,446,102	+		Sama_2012	0.36	+1.4
2,446,102	+		Sama_2012	0.36	+1.0
2,446,103	-		Sama_2012	0.36	+0.6
2,446,103	-		Sama_2012	0.36	+0.3
2,446,103	-		Sama_2012	0.36	+0.2
2,446,103	-		Sama_2012	0.36	-0.4
2,446,273	+		Sama_2012	0.47	+0.9
2,446,274	-		Sama_2012	0.47	+1.6
2,446,382	+		Sama_2012	0.54	+1.5
2,446,455	+		Sama_2012	0.59	+1.5
2,446,504	+		Sama_2012	0.62	+1.3
2,446,524	+		Sama_2012	0.64	-0.5
2,446,524	+		Sama_2012	0.64	-0.7
2,446,525	-		Sama_2012	0.64	-0.7
2,446,525	-		Sama_2012	0.64	+0.5
2,446,536	-		Sama_2012	0.64	+1.0