Strain Fitness in Shewanella amazonensis SB2B around Sama_2010

Experiment: Benzalkonium Chloride 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Benzalkonium Chloride 0.004 mg/ml
2,440,860	+				-0.7
2,440,861	-				-1.0
2,440,861	-				+0.9
2,441,022	+				-0.5
2,441,022	+				-1.9
2,441,022	+				-0.4
2,441,022	+				-2.0
2,441,022	+				-0.3
2,441,022	+				+1.9
2,441,022	+				+0.5
2,441,022	+				+0.3
2,441,022	+				-0.9
2,441,022	+				+0.5
2,441,022	+				+0.0
2,441,023	-				+1.0
2,441,023	-				+0.4
2,441,023	-				+0.1
2,441,023	-				-2.8
2,441,027	-				-0.9
2,441,027	-				+0.6
2,441,052	+				-0.1
2,441,053	-				+0.4
2,441,053	-				+0.7
2,441,053	-				+0.3
2,441,067	+				-0.2
2,441,068	-				+1.0
2,441,143	-				+0.9
2,441,196	+		Sama_2009	0.11	+2.8
2,441,197	-		Sama_2009	0.11	-0.3
2,441,198	+		Sama_2009	0.12	+1.3
2,441,198	+		Sama_2009	0.12	-0.5
2,441,262	+		Sama_2009	0.24	-0.1
2,441,262	+		Sama_2009	0.24	+1.7
2,441,262	+		Sama_2009	0.24	+1.3
2,441,263	-		Sama_2009	0.25	+0.7
2,441,263	-		Sama_2009	0.25	-0.7
2,441,289	+		Sama_2009	0.30	+0.6
2,441,290	-		Sama_2009	0.30	-1.9
2,441,290	-		Sama_2009	0.30	-0.8
2,441,293	+		Sama_2009	0.31	+0.0
2,441,315	-		Sama_2009	0.35	-2.0
2,441,315	-		Sama_2009	0.35	+0.3
2,441,447	+		Sama_2009	0.62	+0.6
2,441,448	-		Sama_2009	0.62	+0.6
2,441,534	-		Sama_2009	0.79	+1.2
2,441,582	+		Sama_2009	0.89	+0.2
2,441,583	-		Sama_2009	0.89	+0.5
2,441,583	-		Sama_2009	0.89	-0.7
2,441,603	+				+0.1
2,441,635	+				+0.9
2,441,635	+				-0.1
2,441,635	+				+1.3
2,441,636	-				-1.3
2,441,636	-				+0.2
2,441,636	-				+0.6
2,441,637	+				-0.7
2,441,637	+				-0.7
2,441,638	-				+0.2
2,441,638	-				-0.4
2,441,638	-				-0.7
2,441,638	-				+0.1
2,441,654	-				+0.2
2,441,654	-				+1.5
2,441,741	+				+0.6
2,441,741	+				+1.3
2,441,798	+		Sama_2010	0.10	-0.5
2,441,799	-		Sama_2010	0.11	+0.4
2,441,799	-		Sama_2010	0.11	+0.6
2,441,799	-		Sama_2010	0.11	-0.1
2,441,854	-		Sama_2010	0.15	-0.9
2,442,012	+		Sama_2010	0.26	+0.3
2,442,012	+		Sama_2010	0.26	-1.3
2,442,012	+		Sama_2010	0.26	-1.0
2,442,013	-		Sama_2010	0.26	-1.3
2,442,084	-		Sama_2010	0.32	-1.7
2,442,084	-		Sama_2010	0.32	-0.5
2,442,084	-		Sama_2010	0.32	-0.4
2,442,171	+		Sama_2010	0.38	+0.1
2,442,180	+		Sama_2010	0.39	+0.7
2,442,194	+		Sama_2010	0.40	-1.5
2,442,195	-		Sama_2010	0.40	-2.6
2,442,249	+		Sama_2010	0.44	+0.1
2,442,249	+		Sama_2010	0.44	-0.1
2,442,250	-		Sama_2010	0.44	+1.3
2,442,304	-		Sama_2010	0.48	-3.9
2,442,340	-		Sama_2010	0.51	+0.3
2,442,350	-		Sama_2010	0.51	+0.5
2,442,350	-		Sama_2010	0.51	-0.2
2,442,474	+		Sama_2010	0.60	+0.9
2,442,474	+		Sama_2010	0.60	-0.2
2,442,475	-		Sama_2010	0.61	+0.8
2,442,475	-		Sama_2010	0.61	+0.5
2,442,489	+		Sama_2010	0.62	+2.1
2,442,606	+		Sama_2010	0.70	+0.4
2,442,610	+		Sama_2010	0.71	-1.1
2,442,610	+		Sama_2010	0.71	-2.5
2,442,610	+		Sama_2010	0.71	-0.8
2,442,610	+		Sama_2010	0.71	-0.9
2,442,611	-		Sama_2010	0.71	+0.3
2,442,611	-		Sama_2010	0.71	-0.9
2,442,611	-		Sama_2010	0.71	-1.4
2,442,611	-		Sama_2010	0.71	+0.7
2,442,611	-		Sama_2010	0.71	-0.5
2,442,611	-		Sama_2010	0.71	-0.2
2,442,611	-		Sama_2010	0.71	+1.5
2,442,611	-		Sama_2010	0.71	+0.9
2,442,711	-		Sama_2010	0.78	-0.3
2,442,760	+		Sama_2010	0.82	+0.5
2,442,890	+				-0.7
2,442,890	+				+1.6
2,442,891	-				+0.6
2,442,891	-				+0.3
2,442,891	-				+0.5
2,442,943	+				+0.5
2,442,944	-				+0.8
2,442,962	-				+0.1
2,442,990	-				+0.4
2,443,045	+				+0.6
2,443,085	-				+0.3
2,443,124	+				+1.0
2,443,160	+				+0.3
2,443,161	-				+0.5
2,443,209	+				+0.5
2,443,209	+				+0.3
2,443,209	+				-0.0
2,443,210	-				-0.9
2,443,320	+				-0.4
2,443,396	+				+0.7
2,443,525	+				-1.8
2,443,600	+		Sama_2011	0.11	-1.1
2,443,673	+		Sama_2011	0.15	+0.1
2,443,710	+		Sama_2011	0.16	-1.7
2,443,710	+		Sama_2011	0.16	+0.3
2,443,711	-		Sama_2011	0.16	-2.4
2,443,718	-		Sama_2011	0.17	-0.4
2,443,782	+		Sama_2011	0.20	-3.4
2,443,792	+		Sama_2011	0.20	-0.2
2,443,793	-		Sama_2011	0.20	-0.0
2,443,795	-		Sama_2011	0.20	-0.8
2,443,795	-		Sama_2011	0.20	+0.1
2,443,795	-		Sama_2011	0.20	-1.7
2,443,795	-		Sama_2011	0.20	-1.4
2,443,795	-		Sama_2011	0.20	+0.2
2,443,795	-		Sama_2011	0.20	-2.0
2,443,838	-		Sama_2011	0.22	-1.7
2,443,838	-		Sama_2011	0.22	-3.8
2,443,856	+		Sama_2011	0.23	-1.3
2,443,856	+		Sama_2011	0.23	-2.0
2,443,857	-		Sama_2011	0.23	+0.0
2,443,857	-		Sama_2011	0.23	-0.0
2,443,857	-		Sama_2011	0.23	+0.3
2,443,857	-		Sama_2011	0.23	-0.5
2,443,895	+		Sama_2011	0.25	-0.7
2,443,895	+		Sama_2011	0.25	-2.0
2,443,896	-		Sama_2011	0.25	-0.7
2,443,896	-		Sama_2011	0.25	-1.1
2,443,896	-		Sama_2011	0.25	-2.8
2,443,991	-		Sama_2011	0.29	-0.7
2,443,991	-		Sama_2011	0.29	-3.3
2,443,991	-		Sama_2011	0.29	+0.3