Strain Fitness in Shewanella amazonensis SB2B around Sama_1539

Experiment: Benzalkonium Chloride 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Benzalkonium Chloride 0.004 mg/ml
1,874,825	+				-1.7
1,874,825	+				-0.5
1,874,852	+				+0.5
1,875,008	+		Sama_1538	0.58	+0.7
1,875,009	-		Sama_1538	0.58	-3.1
1,875,107	+				-0.3
1,875,107	+				-2.3
1,875,107	+				-0.4
1,875,113	-				-0.1
1,875,248	+				+0.8
1,875,248	+				-0.1
1,875,250	+				-0.4
1,875,251	-				-1.3
1,875,310	-				-0.6
1,875,314	-				-1.7
1,875,358	-				+0.7
1,875,358	-				+0.0
1,875,360	+				-0.5
1,875,360	+				-1.0
1,875,361	-				-1.0
1,875,361	-				-1.5
1,875,361	-				-2.5
1,875,366	+				+0.9
1,875,424	+		Sama_1539	0.13	+0.1
1,875,425	-		Sama_1539	0.13	-0.4
1,875,452	+		Sama_1539	0.15	-1.7
1,875,453	-		Sama_1539	0.16	-0.7
1,875,533	+		Sama_1539	0.22	+0.9
1,875,534	-		Sama_1539	0.22	+0.0
1,875,534	-		Sama_1539	0.22	+0.7
1,875,540	-		Sama_1539	0.22	+1.3
1,875,540	-		Sama_1539	0.22	+1.9
1,875,629	+		Sama_1539	0.30	+0.1
1,875,630	-		Sama_1539	0.30	+0.1
1,875,707	+		Sama_1539	0.36	+0.2
1,875,756	-		Sama_1539	0.40	-1.1
1,875,862	-		Sama_1539	0.48	+0.7
1,875,862	-		Sama_1539	0.48	+0.9
1,876,009	+		Sama_1539	0.60	+1.5
1,876,010	-		Sama_1539	0.60	-0.4
1,876,012	+		Sama_1539	0.60	+0.3
1,876,050	+		Sama_1539	0.63	-0.8
1,876,050	+		Sama_1539	0.63	-0.0
1,876,074	+		Sama_1539	0.65	+0.3
1,876,075	-		Sama_1539	0.65	-0.7
1,876,146	-		Sama_1539	0.71	+0.9
1,876,152	+		Sama_1539	0.71	-2.7
1,876,152	+		Sama_1539	0.71	-0.3
1,876,499	+				-1.0
1,876,509	-				+0.4
1,876,514	+				-0.1
1,876,515	-				-0.1
1,876,515	-				+2.9
1,876,548	+				+0.8
1,876,562	+				+1.3
1,876,568	-				-0.7
1,876,573	+				-1.3
1,876,574	-				-0.0
1,876,594	+				-2.4
1,876,612	+				+0.9
1,876,635	+				-0.3
1,876,794	+		Sama_1540	0.24	-0.5
1,876,817	+		Sama_1540	0.27	-0.4
1,876,817	+		Sama_1540	0.27	-1.5
1,876,846	+		Sama_1540	0.32	-0.2
1,876,855	-		Sama_1540	0.33	-0.9
1,876,858	+		Sama_1540	0.33	+1.9
1,876,858	+		Sama_1540	0.33	+0.2
1,876,939	+		Sama_1540	0.45	+0.7
1,876,939	+		Sama_1540	0.45	+0.8
1,876,939	+		Sama_1540	0.45	+0.1
1,876,981	+		Sama_1540	0.51	+0.8
1,876,982	-		Sama_1540	0.51	-0.7
1,877,079	+		Sama_1540	0.65	-1.4
1,877,079	+		Sama_1540	0.65	+0.7
1,877,080	-		Sama_1540	0.65	+0.2
1,877,107	+		Sama_1540	0.69	+0.1
1,877,107	+		Sama_1540	0.69	+0.9
1,877,107	+		Sama_1540	0.69	+0.4
1,877,107	+		Sama_1540	0.69	+1.4
1,877,107	+		Sama_1540	0.69	-0.8
1,877,107	+		Sama_1540	0.69	+2.0
1,877,108	-		Sama_1540	0.69	-0.2
1,877,257	-				+0.3
1,877,260	+				-2.9
1,877,261	-				-3.4
1,877,261	-				-1.1
1,877,261	-				-1.0
1,877,261	-				-1.3
1,877,262	+				+1.7
1,877,280	+				+0.8
1,877,280	+				+0.9
1,877,280	+				+0.9
1,877,281	-				-2.3
1,877,281	-				-1.4
1,877,281	-				+0.7
1,877,305	+				+0.6
1,877,305	+				-0.3
1,877,306	-				-1.3
1,877,357	+				-2.0
1,877,358	-				-2.3
1,877,416	+				-1.9
1,877,416	+				-2.3
1,877,416	+				-0.9
1,877,417	-				-0.7
1,877,417	-				-2.0
1,877,439	+				-2.2
1,877,440	-				-0.5
1,877,469	-				-2.3
1,877,485	-		Sama_1541	0.10	-2.7